pycom01g16700

Belongs to the MIP aquaporin (TC 1.A.8) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
16213140 .. 16214391
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g16700.2

Sequence Viewer

Length: 843 bp
ATGGAGGGCAAGGAAGAGGATGTTAAGCTGGGAGCGAACAAGTACTCGGAGAGGCAGCCGATCGGGACCTCGGCTCAGAGCCAGGACGAAGGGAAGGACTACAAGGAACCGCCGCCTGCTCCACTATTCGAGCCCGGCGAGCTGACGTCATGGTCGTTCTACAGGGCCGGGATCGCCGAGTTCATCGCCACTTTCCTATTCCTCTACATCACAATCTTGACGGTGATGGGCGTTGTCAAGTCGAAGTCGAAGTGCACGACGGTCGGGATTCAAGGAATCGCTTGGGCTTTTGGCGGGACCATCTTCGCCCTCGTCTACAGCACCGCCGGCATCTCCGGTGGTCACATAAACCCGGCGGTGACTTTCGGGCTGTTTTTGGCCAGGAAGCTGTCGCTGACCAGGGCGGTGTTCTACATGGTTATGCAGACCCTCGGAGCTATCGCCGGTGCCGCCGTCGTGAAGGGCTTCGAGAAGAGCTCCACCTTCGAGATGCTGGGCGGTGGTGCCAACTCTGTTGCCCATGGTTACACCAAGGGTCAAGGACTTGGTGCTGATCGATCATCGGCACCTTTGTCCTCGTCTACACCGTTTTCTCCGCCACTGACGCTAAGCGTAGCGCCAGAGACTCCCACGTTCCGATTTTGGCTCCGTTGCCAATTGGGTTCGCCGTGTTCTTGGTGCACTTGGCTACCATCCCCGTCACCGGAACTGGCATCAACCCAGCAAGGAGCCTTGGCGCTGCCATCATCTACAACAAGCAGCATGCTTGGGATGACCACTGGATATTCTGGGTTGGACCGTTCATTGGGGCAGCACTTGCAGCTTTGTACCACGTGGTTGTGA

Protein Analysis

281

Amino Acids

29.72

Weight (kDa)

8.24

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029199)

Species Orthologous Gene IDs
pyrus_communis pycom01g16700 pycom07g19770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 151
AatII GACGTC 1 cut(s) 149
AccB1I GGYRCC 3 cut(s) 446, 503, 565
AccI GTMKAC 2 cut(s) 315, 581
AciI CCGC 9 cut(s) 110, 113, 294, 324, 356, 404, 450, 498, 596
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 378
AcvI CACGTG 1 cut(s) 834
AcyI GRCGYC 1 cut(s) 146
AfaI GTAC 2 cut(s) 44, 829
AfiI CCNNNNNNNGG 2 cut(s) 703, 805
AgsI TTSAA 1 cut(s) 272
AjnI CCWGG 3 cut(s) 81, 380, 398
AluBI AGCT 6 cut(s) 28, 142, 388, 437, 477, 823
AluI AGCT 6 cut(s) 28, 142, 388, 437, 477, 823
Alw21I GWGCWC 3 cut(s) 257, 479, 683
Alw26I GTCTC 1 cut(s) 617
Alw44I GTGCAC 2 cut(s) 253, 679
AlwI GGATC 1 cut(s) 179
AoxI GGCC 2 cut(s) 165, 378
ApaLI GTGCAC 2 cut(s) 253, 679
ApeKI GCWGC 5 cut(s) 55, 739, 759, 811, 820
Asp700I GAANNNNTTC 1 cut(s) 464
AspLEI GCGC 2 cut(s) 619, 739
AspS9I GGNCC 4 cut(s) 66, 165, 297, 796
AsuC2I CCSGG 3 cut(s) 135, 169, 353
AsuHPI GGTGA 3 cut(s) 235, 370, 693
AvaII GGWCC 3 cut(s) 66, 297, 796
BaeGI GKGCMC 2 cut(s) 257, 683
BalI TGGCCA 1 cut(s) 380
BanI GGYRCC 3 cut(s) 446, 503, 565
BanII GRGCYC 2 cut(s) 135, 479
BbrPI CACGTG 1 cut(s) 834
Bbv12I GWGCWC 3 cut(s) 257, 479, 683
BbvI GCAGC 5 cut(s) 67, 726, 771, 823, 832
BccI CCATC 4 cut(s) 220, 308, 700, 751
BceAI ACGGC 2 cut(s) 437, 652
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 3 cut(s) 83, 382, 400
BcnI CCSGG 3 cut(s) 135, 169, 353
BcoDI GTCTC 1 cut(s) 617
BfmI CTRYAG 2 cut(s) 160, 316
BfoI RGCGCY 2 cut(s) 620, 740
BisI GCNGC 7 cut(s) 56, 113, 450, 740, 760, 812, 821
BlpI GCTNAGC 1 cut(s) 608
BlsI GCNGC 7 cut(s) 57, 114, 451, 741, 761, 813, 822
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 6 cut(s) 83, 135, 169, 353, 382, 400
Bme18I GGWCC 3 cut(s) 66, 297, 796
BmgT120I GGNCC 4 cut(s) 66, 165, 297, 796
BmiI GGNNCC 8 cut(s) 67, 108, 298, 448, 505, 567, 647, 730
BmrFI CCNGG 6 cut(s) 83, 135, 169, 353, 382, 400
BmsI GCATC 3 cut(s) 339, 480, 722
BplI GAGNNNNNCTC 2 cut(s) 461, 493
Bpu1102I GCTNAGC 1 cut(s) 608
BpuMI CCSGG 3 cut(s) 135, 169, 353
Bsa29I ATCGAT 1 cut(s) 556
BsaAI YACGTR 1 cut(s) 834
BsaHI GRCGYC 1 cut(s) 146
BsaJI CCNNGG 6 cut(s) 69, 399, 430, 520, 531, 732
BsaWI WCCGGW 2 cut(s) 335, 703
Bsc4I CCNNNNNNNGG 2 cut(s) 703, 805
Bse118I RCCGGY 2 cut(s) 326, 443
Bse1I ACTGG 2 cut(s) 714, 784
BseBI CCWGG 3 cut(s) 83, 382, 400
BseCI ATCGAT 1 cut(s) 556
BseDI CCNNGG 6 cut(s) 69, 399, 430, 520, 531, 732
BseGI GGATG 3 cut(s) 25, 692, 777
BseLI CCNNNNNNNGG 2 cut(s) 703, 805
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 714, 784
BseSI GKGCMC 2 cut(s) 257, 683
BseXI GCAGC 5 cut(s) 67, 726, 771, 823, 832
BseYI CCCAGC 3 cut(s) 28, 493, 720
Bsh1285I CGRYCG 2 cut(s) 63, 264
BshFI GGCC 2 cut(s) 167, 380
BshNI GGYRCC 3 cut(s) 446, 503, 565
BshVI ATCGAT 1 cut(s) 556
BsiEI CGRYCG 2 cut(s) 63, 264
BsiHKAI GWGCWC 3 cut(s) 257, 479, 683
BsiSI CCGG 7 cut(s) 135, 168, 327, 336, 353, 444, 704
BslFI GGGAC 2 cut(s) 79, 310
BslI CCNNNNNNNGG 2 cut(s) 703, 805
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 2 cut(s) 79, 310
BsnI GGCC 2 cut(s) 167, 380
Bsp1286I GDGCHC 4 cut(s) 135, 257, 479, 683
Bsp143I GATC 4 cut(s) 60, 171, 553, 557
Bsp1720I GCTNAGC 1 cut(s) 608
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 9 cut(s) 110, 113, 294, 324, 356, 404, 450, 498, 596
BspANI GGCC 2 cut(s) 167, 380
BspCNI CTCAG 1 cut(s) 88
BspDI ATCGAT 1 cut(s) 556
BspLI GGNNCC 8 cut(s) 67, 108, 298, 448, 505, 567, 647, 730
BspPI GGATC 1 cut(s) 179
BspQI GCTCTTC 1 cut(s) 467
BspT107I GGYRCC 3 cut(s) 446, 503, 565
BsrFI RCCGGY 2 cut(s) 326, 443
BsrI ACTGG 2 cut(s) 714, 784
BssAI RCCGGY 2 cut(s) 326, 443
BssECI CCNNGG 6 cut(s) 69, 399, 430, 520, 531, 732
BssMI GATC 4 cut(s) 60, 171, 553, 557
BssNI GRCGYC 1 cut(s) 146
BssT1I CCWWGG 3 cut(s) 520, 531, 732
Bst2UI CCWGG 3 cut(s) 83, 382, 400
Bst4CI ACNGT 4 cut(s) 223, 262, 588, 800
Bst6I CTCTTC 2 cut(s) 9, 467
BstACI GRCGYC 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 817
BstBAI YACGTR 1 cut(s) 834
BstC8I GCNNGC 4 cut(s) 117, 140, 328, 764
BstDEI CTNAG 2 cut(s) 75, 608
BstDSI CCRYGG 1 cut(s) 520
BstF5I GGATG 3 cut(s) 25, 692, 777
BstH2I RGCGCY 2 cut(s) 620, 740
BstHHI GCGC 2 cut(s) 619, 739
BstKTI GATC 4 cut(s) 63, 174, 556, 560
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 4 cut(s) 60, 171, 553, 557
BstMCI CGRYCG 2 cut(s) 63, 264
BstMWI GCNNNNNNNGC 7 cut(s) 139, 173, 327, 449, 604, 817, 820
BstNI CCWGG 3 cut(s) 83, 382, 400
BstNSI RCATGY 1 cut(s) 766
BstSCI CCNGG 6 cut(s) 81, 133, 167, 351, 380, 398
BstSFI CTRYAG 2 cut(s) 160, 316
BstSLI GKGCMC 2 cut(s) 257, 683
BstV1I GCAGC 5 cut(s) 67, 726, 771, 823, 832
Bsu15I ATCGAT 1 cut(s) 556
BsuRI GGCC 2 cut(s) 167, 380
BsuTUI ATCGAT 1 cut(s) 556
BtgI CCRYGG 1 cut(s) 520
BtgZI GCGATG 1 cut(s) 169
BtsCI GGATG 3 cut(s) 25, 692, 777
BtsIMutI CAGTG 2 cut(s) 599, 777
Cac8I GCNNGC 4 cut(s) 117, 140, 328, 764
CfoI GCGC 2 cut(s) 619, 739
Cfr10I RCCGGY 2 cut(s) 326, 443
Cfr13I GGNCC 4 cut(s) 66, 165, 297, 796
ClaI ATCGAT 1 cut(s) 556
CseI GACGC 1 cut(s) 613
Csp6I GTAC 2 cut(s) 43, 828
CviAII CATG 4 cut(s) 150, 415, 521, 763
CviQI GTAC 2 cut(s) 43, 828
DdeI CTNAG 2 cut(s) 75, 608
DpnI GATC 4 cut(s) 62, 173, 555, 559
DpnII GATC 4 cut(s) 60, 171, 553, 557
DrdI GACNNNNNNGTC 1 cut(s) 151
DseDI GACNNNNNNGTC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 2 cut(s) 9, 467
EarI CTCTTC 2 cut(s) 9, 467
EciI GGCGGA 1 cut(s) 585
Ecl136II GAGCTC 1 cut(s) 477
Eco130I CCWWGG 3 cut(s) 520, 531, 732
Eco24I GRGCYC 2 cut(s) 135, 479
Eco47I GGWCC 3 cut(s) 66, 297, 796
Eco53kI GAGCTC 1 cut(s) 477
Eco72I CACGTG 1 cut(s) 834
EcoICRI GAGCTC 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 66
EcoRII CCWGG 3 cut(s) 81, 380, 398
EcoT14I CCWWGG 3 cut(s) 520, 531, 732
EcoT38I GRGCYC 2 cut(s) 135, 479
ErhI CCWWGG 3 cut(s) 520, 531, 732
FaeI CATG 4 cut(s) 153, 418, 524, 766
FaiI YATR 6 cut(s) 151, 347, 416, 422, 522, 764
FaqI GGGAC 2 cut(s) 79, 310
FatI CATG 4 cut(s) 149, 414, 520, 762
FauI CCCGC 1 cut(s) 287
FblI GTMKAC 2 cut(s) 315, 581
Fnu4HI GCNGC 7 cut(s) 56, 113, 450, 740, 760, 812, 821
FokI GGATG 3 cut(s) 32, 679, 784
FriOI GRGCYC 2 cut(s) 135, 479
Fsp4HI GCNGC 7 cut(s) 56, 113, 450, 740, 760, 812, 821
GlaI GCGC 2 cut(s) 618, 738
GluI GCNGC 7 cut(s) 56, 113, 450, 740, 760, 812, 821
GsaI CCCAGC 3 cut(s) 32, 497, 724
HaeII RGCGCY 2 cut(s) 620, 740
HaeIII GGCC 2 cut(s) 167, 380
HapII CCGG 7 cut(s) 135, 168, 327, 336, 353, 444, 704
HgaI GACGC 1 cut(s) 613
HhaI GCGC 2 cut(s) 619, 739
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 4 cut(s) 153, 418, 524, 766
Hin6I GCGC 2 cut(s) 617, 737
HinP1I GCGC 2 cut(s) 617, 737
HinfI GANTC 3 cut(s) 268, 276, 625
HpaII CCGG 7 cut(s) 135, 168, 327, 336, 353, 444, 704
HphI GGTGA 3 cut(s) 235, 370, 693
Hpy166II GTNNAC 4 cut(s) 255, 316, 582, 681
Hpy188I TCNGA 4 cut(s) 49, 78, 434, 638
Hpy188III TCNNGA 6 cut(s) 64, 217, 265, 457, 469, 487
Hpy8I GTNNAC 4 cut(s) 255, 316, 582, 681
Hpy99I CGWCG 2 cut(s) 262, 458
HpyAV CCTTC 4 cut(s) 83, 88, 454, 493
HpyCH4III ACNGT 4 cut(s) 223, 262, 588, 800
HpyCH4IV ACGT 3 cut(s) 146, 632, 833
HpyCH4V TGCA 4 cut(s) 255, 424, 681, 820
HpyF10VI GCNNNNNNNGC 7 cut(s) 139, 173, 327, 449, 604, 817, 820
HpyF3I CTNAG 2 cut(s) 75, 608
HpySE526I ACGT 3 cut(s) 146, 632, 833
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 4 cut(s) 153, 418, 524, 766
HspAI GCGC 2 cut(s) 617, 737
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Kzo9I GATC 4 cut(s) 60, 171, 553, 557
LguI GCTCTTC 1 cut(s) 467
LmnI GCTCC 6 cut(s) 32, 124, 434, 482, 651, 728
Lsp1109I GCAGC 5 cut(s) 67, 726, 771, 823, 832
LweI GCATC 3 cut(s) 339, 480, 722
MaeII ACGT 3 cut(s) 146, 632, 833
MaeIII GTNAC 4 cut(s) 341, 358, 524, 699
MalI GATC 4 cut(s) 62, 173, 555, 559
MboI GATC 4 cut(s) 60, 171, 553, 557
MboII GAAGA 3 cut(s) 26, 295, 484
MfeI CAATTG 1 cut(s) 656
MhlI GDGCHC 4 cut(s) 135, 257, 479, 683
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 1 cut(s) 656
MluNI TGGCCA 1 cut(s) 380
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 1 cut(s) 774
MnlI CCTC 7 cut(s) 10, 45, 79, 212, 320, 440, 586
Mox20I TGGCCA 1 cut(s) 380
MroNI GCCGGC 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 464
MscI TGGCCA 1 cut(s) 380
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 419
Msp20I TGGCCA 1 cut(s) 380
MspI CCGG 7 cut(s) 135, 168, 327, 336, 353, 444, 704
MspR9I CCNGG 6 cut(s) 83, 135, 169, 353, 382, 400
MunI CAATTG 1 cut(s) 656
MvaI CCWGG 3 cut(s) 83, 382, 400
MwoI GCNNNNNNNGC 7 cut(s) 139, 173, 327, 449, 604, 817, 820
NaeI GCCGGC 1 cut(s) 328
NciI CCSGG 3 cut(s) 135, 169, 353
NcoI CCATGG 1 cut(s) 520
NdeII GATC 4 cut(s) 60, 171, 553, 557
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 4 cut(s) 153, 418, 524, 766
NlaIV GGNNCC 8 cut(s) 67, 108, 298, 448, 505, 567, 647, 730
NmeAIII GCCGAG 2 cut(s) 50, 202
NmuCI GTSAC 3 cut(s) 341, 358, 699
NspI RCATGY 1 cut(s) 766
PaeI GCATGC 1 cut(s) 766
PciSI GCTCTTC 1 cut(s) 467
PcsI WCGNNNNNNNCGW 4 cut(s) 135, 152, 254, 584
PdiI GCCGGC 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 2 cut(s) 268, 276
PkrI GCNGC 7 cut(s) 57, 114, 451, 741, 761, 813, 822
Ple19I CGATCG 1 cut(s) 63
PleI GAGTC 1 cut(s) 619
PmaCI CACGTG 1 cut(s) 834
PmlI CACGTG 1 cut(s) 834
PpsI GAGTC 1 cut(s) 619
Ppu21I YACGTR 1 cut(s) 834
PpuMI RGGWCCY 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 479
Psp5II RGGWCCY 1 cut(s) 66
Psp6I CCWGG 3 cut(s) 81, 380, 398
PspCI CACGTG 1 cut(s) 834
PspFI CCCAGC 3 cut(s) 28, 493, 720
PspGI CCWGG 3 cut(s) 81, 380, 398
PspN4I GGNNCC 8 cut(s) 67, 108, 298, 448, 505, 567, 647, 730
PspPI GGNCC 4 cut(s) 66, 165, 297, 796
PspPPI RGGWCCY 1 cut(s) 66
PvuI CGATCG 1 cut(s) 63
RsaI GTAC 2 cut(s) 44, 829
RsaNI GTAC 2 cut(s) 43, 828
RseI CAYNNNNRTG 1 cut(s) 419
SacI GAGCTC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 467
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 7 cut(s) 56, 113, 450, 740, 760, 812, 821
Sau3AI GATC 4 cut(s) 60, 171, 553, 557
Sau96I GGNCC 4 cut(s) 66, 165, 297, 796
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 6 cut(s) 83, 135, 169, 353, 382, 400
SduI GDGCHC 4 cut(s) 135, 257, 479, 683
SfaNI GCATC 3 cut(s) 339, 480, 722
SfcI CTRYAG 2 cut(s) 160, 316
SgrAI CRCCGGYG 1 cut(s) 443
SinI GGWCC 3 cut(s) 66, 297, 796
SmiMI CAYNNNNRTG 1 cut(s) 419
SphI GCATGC 1 cut(s) 766
Sse9I AATT 1 cut(s) 656
SsiI CCGC 9 cut(s) 110, 113, 294, 324, 356, 404, 450, 498, 596
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 6 cut(s) 81, 133, 167, 351, 380, 398
StyI CCWWGG 3 cut(s) 520, 531, 732
TaaI ACNGT 4 cut(s) 223, 262, 588, 800
TaiI ACGT 3 cut(s) 149, 635, 836
TaqI TCGA 6 cut(s) 129, 242, 248, 468, 486, 556
TasI AATT 1 cut(s) 656
TatI WGTACW 1 cut(s) 42
TauI GCSGC 2 cut(s) 115, 452
TfiI GAWTC 2 cut(s) 268, 276
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 2 cut(s) 606, 784
TseFI GTSAC 3 cut(s) 341, 358, 699
TseI GCWGC 5 cut(s) 55, 739, 759, 811, 820
Tsp45I GTSAC 3 cut(s) 341, 358, 699
TspDTI ATGAA 2 cut(s) 172, 792
TspGWI ACGGA 1 cut(s) 638
TspRI CASTG 2 cut(s) 606, 784
VneI GTGCAC 2 cut(s) 253, 679
VpaK11BI GGWCC 3 cut(s) 66, 297, 796
XceI RCATGY 1 cut(s) 766
XmiI GTMKAC 2 cut(s) 315, 581
XmnI GAANNNNTTC 1 cut(s) 464
ZraI GACGTC 1 cut(s) 147
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.