Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0029202

Physical Location & Seq

Genomic Coordinates Forward (+)

18529756 .. 18530398

Gene Structure 643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAAATACGACGTCTTCCTGAATTTCAGAGGCGAAGACACTCGCAAGATCTTCGTCGGCCATCTCTACAGTGCTCTGCGACGGAAAGCAATCAACACCTTCATCGACGCCGAAGAGCTCAGAAAAGGCAACGACCTTTCGGAACTCCTTGCGGCTATCGAGTCGTCGAGGCTTTCGATCGTGGTTTTCTCCCAGGACTACGCTTCTTCGACGTGGTGCTTGAAAGAACTGGTCAAAATCCTGGAGTGCATGGATGCAAAGAAGCAGATAGTGGTGCCGATTTTCTACAAAGTTCATTGATCGATCCATCTGAAGTTCGTAAGCTCAAGAGAAGTTTTGCAGAAGTTTTTCCTCAAAACGAAGGTGAATCGAGCGTTGAAATGAAAGAGGTGGAGAGCTGGAGGTCCGCGCTAACCAGAGCTGCCAATTTATCCGGCTGGGATTCGCGAAAATACGAAGGGATGATGCCAAGCTTATTGAGGAAATTGTGGATGATATATTTGAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009626 GO:0009628 GO:0009639 GO:0009870 GO:0009987 GO:0010114 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

171

Amino Acids

19.87

Weight (kDa)

10.01

Isoelectric Point (pI)

80.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029202)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g20110 pycom01g20140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	2 cut(s)	410, 448
AciI	CCGC	2 cut(s)	153, 408
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	2 cut(s)	13, 109
AgsI	TTSAA	2 cut(s)	224, 380
AjiI	CACGTC	1 cut(s)	214
AjnI	CCWGG	2 cut(s)	193, 241
AluBI	AGCT	5 cut(s)	119, 325, 399, 422, 474
AluI	AGCT	5 cut(s)	119, 325, 399, 422, 474
Alw21I	GWGCWC	2 cut(s)	77, 121
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	1 cut(s)	23
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	405
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	405
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	121
BbsI	GAAGAC	2 cut(s)	8, 43
Bbv12I	GWGCWC	2 cut(s)	77, 121
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	2 cut(s)	70, 316
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	2 cut(s)	195, 243
BfmI	CTRYAG	1 cut(s)	68
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	2 cut(s)	154, 423
BlsI	GCNGC	2 cut(s)	155, 424
Bme1390I	CCNGG	2 cut(s)	195, 243
Bme18I	GGWCC	1 cut(s)	405
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	195, 243
BmsI	GCATC	2 cut(s)	245, 456
BpiI	GAAGAC	2 cut(s)	8, 43
BpmI	CTGGAG	2 cut(s)	264, 421
BpuEI	CTTGAG	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	303
BsaHI	GRCGYC	2 cut(s)	13, 109
BsaJI	CCNNGG	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	195, 243
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	3 cut(s)	260, 468, 498
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	409
BseYI	CCCAGC	1 cut(s)	438
Bsh1236I	CGCG	2 cut(s)	410, 448
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	275
BshVI	ATCGAT	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	2 cut(s)	77, 121
BsiSI	CCGG	1 cut(s)	435
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	77, 121
Bsp143I	GATC	4 cut(s)	49, 178, 300, 304
Bsp68I	TCGCGA	1 cut(s)	448
BspACI	CCGC	2 cut(s)	153, 408
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	133
BspDI	ATCGAT	1 cut(s)	303
BspFNI	CGCG	2 cut(s)	410, 448
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	4 cut(s)	49, 178, 300, 304
BssNI	GRCGYC	2 cut(s)	13, 109
Bst2UI	CCWGG	2 cut(s)	195, 243
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	109
BstACI	GRCGYC	2 cut(s)	13, 109
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	3 cut(s)	260, 468, 498
BstFNI	CGCG	2 cut(s)	410, 448
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	4 cut(s)	52, 181, 303, 307
BstMBI	GATC	4 cut(s)	49, 178, 300, 304
BstMCI	CGRYCG	1 cut(s)	181
BstNI	CCWGG	2 cut(s)	195, 243
BstSCI	CCNGG	2 cut(s)	193, 241
BstSFI	CTRYAG	1 cut(s)	68
BstUI	CGCG	2 cut(s)	410, 448
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	2 cut(s)	8, 43
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	61
BsuTUI	ATCGAT	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	3 cut(s)	260, 468, 498
BtsIMutI	CAGTG	1 cut(s)	77
BtuMI	TCGCGA	1 cut(s)	448
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	405
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	1 cut(s)	117
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	9 cut(s)	61, 119, 156, 173, 325, 399, 422, 438, 474
CviKI_1	RGCY	9 cut(s)	61, 119, 156, 173, 325, 399, 422, 438, 474
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	4 cut(s)	51, 180, 302, 306
DpnII	GATC	4 cut(s)	49, 178, 300, 304
EaeI	YGGCCR	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	193, 241
EcoT38I	GRGCYC	1 cut(s)	121
FaeI	CATG	1 cut(s)	254
FaiI	YATR	2 cut(s)	252, 499
FatI	CATG	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	154, 423
FokI	GGATG	3 cut(s)	267, 475, 505
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	154, 423
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	2 cut(s)	154, 423
GsaI	CCCAGC	1 cut(s)	442
GsuI	CTGGAG	2 cut(s)	264, 421
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	412
Hin1I	GRCGYC	2 cut(s)	13, 109
Hin1II	CATG	1 cut(s)	254
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HindIII	AAGCTT	1 cut(s)	472
HinfI	GANTC	3 cut(s)	162, 368, 443
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	4 cut(s)	30, 123, 143, 313
Hpy188III	TCNNGA	3 cut(s)	20, 328, 447
Hpy99I	CGWCG	6 cut(s)	15, 60, 85, 111, 170, 215
HpyAV	CCTTC	3 cut(s)	110, 356, 452
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	2 cut(s)	13, 213
HpyCH4V	TGCA	3 cut(s)	250, 258, 341
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	13, 213
Hsp92I	GRCGYC	2 cut(s)	13, 109
Hsp92II	CATG	1 cut(s)	254
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	4 cut(s)	49, 178, 300, 304
LguI	GCTCTTC	1 cut(s)	109
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	2 cut(s)	245, 456
MaeII	ACGT	2 cut(s)	13, 213
MalI	GATC	4 cut(s)	51, 180, 302, 306
MboI	GATC	4 cut(s)	49, 178, 300, 304
MboII	GAAGA	5 cut(s)	8, 44, 48, 126, 199
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	77, 121
MluCI	AATT	3 cut(s)	23, 427, 485
MlyI	GAGTC	1 cut(s)	171
MnlI	CCTC	6 cut(s)	24, 163, 363, 382, 396, 474
MroXI	GAANNNNTTC	1 cut(s)	348
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	195, 243
MvaI	CCWGG	2 cut(s)	195, 243
MvnI	CGCG	2 cut(s)	410, 448
NdeII	GATC	4 cut(s)	49, 178, 300, 304
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	277
NruI	TCGCGA	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	368, 443
PfoI	TCCNGGA	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	155, 424
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	193, 241
PspFI	CCCAGC	1 cut(s)	438
PspGI	CCWGG	2 cut(s)	193, 241
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	49
PvuI	CGATCG	1 cut(s)	181
RruI	TCGCGA	1 cut(s)	448
SacI	GAGCTC	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	109
SatI	GCNGC	2 cut(s)	154, 423
Sau3AI	GATC	4 cut(s)	49, 178, 300, 304
Sau96I	GGNCC	1 cut(s)	405
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	195, 243
SduI	GDGCHC	2 cut(s)	77, 121
SfaNI	GCATC	2 cut(s)	245, 456
SfcI	CTRYAG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	23, 427, 485
SsiI	CCGC	2 cut(s)	153, 408
SstI	GAGCTC	1 cut(s)	121
StyD4I	CCNGG	2 cut(s)	193, 241
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	2 cut(s)	16, 216
TaqI	TCGA	7 cut(s)	106, 160, 168, 177, 210, 303, 371
TasI	AATT	3 cut(s)	23, 427, 485
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	368, 443
TscAI	CASTG	1 cut(s)	77
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	3 cut(s)	92, 285, 398
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	405
XapI	RAATTY	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	348
ZraI	GACGTC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.