pycom01g20140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0029202
Physical Location & Seq
Forward (+)
18547752 .. 18548048
297 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g20140.1

Sequence Viewer

Length: 297 bp
ATGAAAATACGACGTCTTCCTGAATTTCAGAGGCGAAGACACTCGCAAGATCTTTGTCGGCCATCTCTACGGAGCTCTGGGTCTGAAGGCAATCAACACCTTCATCGACGCCGAAAAGCTCAGAAAAGGCGACGACCTTTCGGAACTACTTTCAGCTATCGAAGAGTCGAGGCTTTCGATTGTGGTTTTCTCCCAGAACTACGCTTCTTCGACTTGGTGCTTGAAAGAACTGGTCAAAATCCTGGCGTGCATGGATGCAAAGAATCAGATAGTGGTGCCGATTTTCTACGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.56

Weight (kDa)

11.17

Isoelectric Point (pI)

97.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029202)

Species Orthologous Gene IDs
pyrus_communis pycom01g20110 pycom01g20140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 59
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 105
AcyI GRCGYC 2 cut(s) 13, 109
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 3 cut(s) 75, 119, 156
AluI AGCT 3 cut(s) 75, 119, 156
Alw21I GWGCWC 1 cut(s) 77
AoxI GGCC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 23
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 77
BbsI GAAGAC 2 cut(s) 8, 43
Bbv12I GWGCWC 1 cut(s) 77
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 243
BglII AGATCT 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 245
BpiI GAAGAC 2 cut(s) 8, 43
BsaHI GRCGYC 2 cut(s) 13, 109
Bse1I ACTGG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 235
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 77
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 49
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 275
BsrI ACTGG 1 cut(s) 235
BssMI GATC 1 cut(s) 49
BssNI GRCGYC 2 cut(s) 13, 109
Bst2UI CCWGG 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 157
BstACI GRCGYC 2 cut(s) 13, 109
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 260
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstV2I GAAGAC 2 cut(s) 8, 43
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 248
CseI GACGC 1 cut(s) 117
CviAII CATG 1 cut(s) 251
CviJI RGCY 5 cut(s) 61, 75, 119, 156, 173
CviKI_1 RGCY 5 cut(s) 61, 75, 119, 156, 173
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 1 cut(s) 254
FaiI YATR 1 cut(s) 252
FatI CATG 1 cut(s) 250
FokI GGATG 1 cut(s) 267
FriOI GRGCYC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 61
HgaI GACGC 1 cut(s) 117
Hin1I GRCGYC 2 cut(s) 13, 109
Hin1II CATG 1 cut(s) 254
HinfI GANTC 2 cut(s) 165, 263
Hpy188I TCNGA 5 cut(s) 30, 85, 123, 143, 268
Hpy188III TCNNGA 1 cut(s) 20
Hpy99I CGWCG 3 cut(s) 15, 111, 135
HpyAV CCTTC 2 cut(s) 80, 110
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 2 cut(s) 250, 258
HpyF3I CTNAG 1 cut(s) 120
HpySE526I ACGT 1 cut(s) 13
Hsp92I GRCGYC 2 cut(s) 13, 109
Hsp92II CATG 1 cut(s) 254
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 6 cut(s) 33, 63, 207, 216, 228, 255
LweI GCATC 1 cut(s) 245
MaeII ACGT 1 cut(s) 13
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 4 cut(s) 8, 48, 174, 199
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 1 cut(s) 23
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 2 cut(s) 24, 163
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 1 cut(s) 263
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 277
PsuI RGATCY 1 cut(s) 49
SacI GAGCTC 1 cut(s) 77
Sau3AI GATC 1 cut(s) 49
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 77
SetI ASST 6 cut(s) 16, 77, 102, 121, 139, 158
SfaNI GCATC 1 cut(s) 245
Sse9I AATT 1 cut(s) 23
SstI GAGCTC 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 241
TaiI ACGT 1 cut(s) 16
TaqI TCGA 5 cut(s) 106, 160, 168, 177, 210
TasI AATT 1 cut(s) 23
TfiI GAWTC 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 17, 92
TspGWI ACGGA 1 cut(s) 85
XapI RAATTY 1 cut(s) 23
ZraI GACGTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.