Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0029204

Physical Location & Seq

Genomic Coordinates Reverse (-)

19359052 .. 19360207

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAAACAGACCTTCTCTTCTTTAGTAGTGATAAGCCGGCAGAGGCTGAAGGTGCAGAACGGGGAGAGAAGATTGAAGATCTTTCCAAACCAGGCTCAGATTTGTTTGAAAGCAACTTTAAAGAACTTCAAAAATGGGTTGAAGTGAAGTCCTCCAAAAACGGAACTCTCTCAGTACTACGTGAGAAACGTTCTGGAAGGCTTGGAACAGAACTGAAGTTTCTGAATGACGTAATTCAAAATGATGGGGAGCCTCCCAAGAAGAAGTTCTACGACCTGAAGATTTCCTTGCTCGATGAGATTGGCTGGCAACATTTGGCGGCACACGAGAGGCAATGGATGCATGTCCGCTTTCCACCAAGTTTACCTCTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

126

Amino Acids

14.4

Weight (kDa)

5.66

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029204)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g21220
rosa_multiflora	Rmu_co7972698.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	320, 349
AclI	AACGTT	1 cut(s)	190
AcuI	CTGAAG	3 cut(s)	69, 236, 299
AfaI	GTAC	1 cut(s)	177
AgsI	TTSAA	5 cut(s)	77, 110, 131, 143, 239
AjnI	CCWGG	1 cut(s)	91
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AlwNI	CAGNNNCTG	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	266
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BauI	CACGAG	1 cut(s)	326
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	93
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
BmcAI	AGTACT	1 cut(s)	177
Bme1390I	CCNGG	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	330
BsaAI	YACGTR	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	345
BseMI	GCAATG	1 cut(s)	341
BseMII	CTCAG	2 cut(s)	111, 186
BsgI	GTGCAG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	2 cut(s)	320, 349
BspCNI	CTCAG	2 cut(s)	110, 185
BspLI	GGNNCC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssMI	GATC	1 cut(s)	79
BssSI	CACGAG	1 cut(s)	326
Bst2BI	CACGAG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	39, 308
BstDEI	CTNAG	2 cut(s)	97, 172
BstF5I	GGATG	1 cut(s)	345
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 340
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	39, 308
CaiI	CAGNNNCTG	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	6 cut(s)	37, 47, 96, 202, 253, 306
CviKI_1	RGCY	6 cut(s)	37, 47, 96, 202, 253, 306
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	2 cut(s)	97, 172
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
DraI	TTTAAA	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco57I	CTGAAG	3 cut(s)	69, 236, 299
EcoRII	CCWGG	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	345
FaeI	CATG	1 cut(s)	347
FaiI	YATR	1 cut(s)	345
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	321
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	1 cut(s)	347
HpaII	CCGG	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	2 cut(s)	100, 225
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	1 cut(s)	365
HpyAV	CCTTC	3 cut(s)	23, 44, 192
HpyCH4IV	ACGT	3 cut(s)	181, 190, 231
HpyCH4V	TGCA	2 cut(s)	56, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 340
HpyF3I	CTNAG	2 cut(s)	97, 172
HpySE526I	ACGT	3 cut(s)	181, 190, 231
Hsp92II	CATG	1 cut(s)	347
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	6 cut(s)	51, 78, 105, 180, 290, 292
LweI	GCATC	1 cut(s)	330
MaeII	ACGT	3 cut(s)	181, 190, 231
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	5 cut(s)	10, 82, 89, 274, 292
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	1 cut(s)	234
MnlI	CCTC	5 cut(s)	37, 163, 264, 324, 378
Mph1103I	ATGCAT	1 cut(s)	345
MroNI	GCCGGC	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	120
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	53, 340
NaeI	GCCGGC	1 cut(s)	39
NdeII	GATC	1 cut(s)	79
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	345
NspI	RCATGY	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PdiI	GCCGGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	182
Psp1406I	AACGTT	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	252
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	79
ScaI	AGTACT	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	7 cut(s)	15, 55, 184, 193, 234, 279, 370
SfaNI	GCATC	1 cut(s)	330
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	2 cut(s)	320, 349
StyD4I	CCNGG	1 cut(s)	91
TaiI	ACGT	3 cut(s)	184, 193, 234
TaqI	TCGA	1 cut(s)	294
TasI	AATT	1 cut(s)	234
TatI	WGTACW	1 cut(s)	175
TauI	GCSGC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TspGWI	ACGGA	1 cut(s)	177
XceI	RCATGY	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.