Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7972698.1

Orthogroup ID

OG0029204

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 485

Gene Structure 485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7972698.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ctgcagggggataagccttcggcgtcggaagtaactgaaggttcaaaagaggcagacaagactgctgactctggaccaggctctggtggcctgcttgatcgctttgaagacacttttaaagaacttcaaaaatgggtcgaagtgaaatcctctaaatacggaatcctttcagtaacacgtgagaaacatcatggaaggcttggaacagcactcaaggtcttgaatgacataattcaagagaatacggagcctccgaagaagaagctttacgaagaaaagctgtctctgcttgaagagatcgggtggcagcacttggtgacatatgagagacaatggatgcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

114

Amino Acids

12.95

Weight (kDa)

5.83

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029204)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g21220
rosa_multiflora	Rmu_co7972698.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	57
AcvI	CACGTG	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	23
AdeI	CACNNNGTG	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	6 cut(s)	45, 107, 128, 223, 236, 293
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	2 cut(s)	265, 280
AluI	AGCT	2 cut(s)	265, 280
Alw26I	GTCTC	2 cut(s)	288, 322
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	307
Asp700I	GAANNNNTTC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	74
BarI	GAAGNNNNNNTAC	2 cut(s)	251, 283
BbrPI	CACGTG	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	288, 322
BfmI	CTRYAG	1 cut(s)	2
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	288, 322
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	97, 297
BspANI	GGCC	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	6
BssMI	GATC	2 cut(s)	97, 297
BssNI	GRCGYC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	342
BstKTI	GATC	2 cut(s)	100, 300
BstMAI	GTCTC	2 cut(s)	288, 322
BstMBI	GATC	2 cut(s)	97, 297
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 286
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstSFI	CTRYAG	1 cut(s)	2
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	74
CseI	GACGC	1 cut(s)	12
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	7 cut(s)	16, 81, 90, 199, 250, 265, 280
CviKI_1	RGCY	7 cut(s)	16, 81, 90, 199, 250, 265, 280
DpnI	GATC	2 cut(s)	99, 299
DpnII	GATC	2 cut(s)	97, 297
DraI	TTTAAA	1 cut(s)	118
DraIII	CACNNNGTG	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	57
Eco72I	CACGTG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	342
FaeI	CATG	1 cut(s)	194
FaiI	YATR	4 cut(s)	192, 230, 322, 324
FatI	CATG	1 cut(s)	190
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	308
GluI	GCNGC	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	90
HgaI	GACGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	194
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	68, 162
HphI	GGTGA	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	28, 255
Hpy188III	TCNNGA	3 cut(s)	72, 220, 236
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	27, 32, 189
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	4, 340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 286
HpySE526I	ACGT	1 cut(s)	178
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	97, 297
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	5 cut(s)	57, 63, 69, 90, 104
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	327
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	3 cut(s)	31, 172, 316
MalI	GATC	2 cut(s)	99, 299
MboI	GATC	2 cut(s)	97, 297
MboII	GAAGA	5 cut(s)	119, 268, 271, 284, 305
MluCI	AATT	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	3 cut(s)	43, 160, 261
Mph1103I	ATGCAT	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	166
MseI	TTAA	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	87, 286
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	97, 297
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	1 cut(s)	62
PmaCI	CACGTG	1 cut(s)	179
PmlI	CACGTG	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	62
Ppu21I	YACGTR	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	76
PspCI	CACGTG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	2 cut(s)	97, 297
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	5 cut(s)	43, 181, 219, 267, 282
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	2
SinI	GGWCC	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	76
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	316
TspGWI	ACGGA	2 cut(s)	174, 260
Van91I	CCANNNNNTGG	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	166
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.