Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0029205

Physical Location & Seq

Genomic Coordinates Forward (+)

19436319 .. 19437051

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGATGGGACGTGTATTCGGTGCCATTGTCAGATCTTAAAACTTCCATCACTTCACTCTTAGACTTTAAAAGGTACAACCAAGTGAACCATCAAAAGATTCAAACGTTGGTCCCCATACATCTGAGTGAACTAACAAATGACAGGTTTCACACGAAATTAAATCATTCCCTAAATTTGGAAACAAAGATGACAAAACAGGTTGAGAAGGATGAGCTAGACGTTGATGCCACAATTGACTATCTTGGGATGGATTGGACTTGGCTTGAAATCCCCTGGGACTGCTCTTTGATATGTAATAGAGACCATCTAGATAAAACCCTTCACCAATCGAGAGAAGAAGAAGTTGAAATGGAAAAGAAAGAACATATAAGGCTACTGACTCAATTTTGTCCGACATTAAGTGGATATTTCCCTTGCCTAAAACCTTGGAACTCTCACTATTGGCAGTTGAGACTTGAGAAGGTTGCGAAAAATTTTCAAACTTTTGAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

166

Amino Acids

19.83

Weight (kDa)

5.88

Isoelectric Point (pI)

27.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029205)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g21340 pycom03g20110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AclI	AACGTT	1 cut(s)	107
AcsI	RAATTY	2 cut(s)	175, 475
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	5 cut(s)	104, 269, 350, 482, 491
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	2 cut(s)	297, 448
ApoI	RAATTY	2 cut(s)	175, 475
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	22
BccI	CCATC	4 cut(s)	56, 99, 244, 315
BciT130I	CCWGG	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	297, 448
BfaI	CTAG	2 cut(s)	218, 311
BglII	AGATCT	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	112
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	24, 114
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	3 cut(s)	275, 276, 428
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	3 cut(s)	275, 276, 428
BseGI	GGATG	2 cut(s)	217, 255
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	22
BslFI	GGGAC	3 cut(s)	23, 98, 293
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	297, 448
BsmFI	GGGAC	3 cut(s)	23, 98, 293
Bso31I	GGTCTC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	24, 114
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	297
BssECI	CCNNGG	3 cut(s)	275, 276, 428
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	61, 125, 495
BstF5I	GGATG	2 cut(s)	217, 255
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	2 cut(s)	297, 448
BstMBI	GATC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	217, 255
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	76
CviJI	RGCY	3 cut(s)	217, 265, 376
CviKI_1	RGCY	3 cut(s)	217, 265, 376
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	3 cut(s)	61, 125, 495
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
DraI	TTTAAA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	428
FaiI	YATR	4 cut(s)	119, 295, 369, 371
FaqI	GGGAC	3 cut(s)	23, 98, 293
FokI	GGATG	2 cut(s)	224, 262
FspBI	CTAG	2 cut(s)	218, 311
HinfI	GANTC	2 cut(s)	100, 382
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	2 cut(s)	88, 131
Hpy188I	TCNGA	3 cut(s)	34, 126, 396
Hpy188III	TCNNGA	2 cut(s)	311, 333
Hpy8I	GTNNAC	2 cut(s)	88, 131
HpyAV	CCTTC	3 cut(s)	202, 332, 457
HpyCH4IV	ACGT	3 cut(s)	12, 107, 222
HpyF3I	CTNAG	3 cut(s)	61, 125, 495
HpySE526I	ACGT	3 cut(s)	12, 107, 222
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	4 cut(s)	130, 185, 262, 289
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	218, 311
MaeII	ACGT	3 cut(s)	12, 107, 222
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	2 cut(s)	350, 353
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	5 cut(s)	158, 175, 234, 386, 475
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	1 cut(s)	419
MseI	TTAA	4 cut(s)	39, 69, 161, 401
MslI	CAYNNNNRTG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	277
MunI	CAATTG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	24, 114
PasI	CCCWGGG	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp1406I	AACGTT	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	24, 114
PspPI	GGNCC	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	4 cut(s)	39, 69, 161, 401
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	277
SetI	ASST	9 cut(s)	15, 77, 110, 149, 204, 219, 225, 430, 468
SfaNI	GCATC	1 cut(s)	217
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	5 cut(s)	158, 175, 234, 386, 475
SspMI	CTAG	2 cut(s)	218, 311
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	428
TaiI	ACGT	3 cut(s)	15, 110, 225
TaqI	TCGA	1 cut(s)	332
TasI	AATT	5 cut(s)	158, 175, 234, 386, 475
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	4 cut(s)	39, 69, 161, 401
Tru9I	TTAA	4 cut(s)	39, 69, 161, 401
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	2 cut(s)	175, 475
XbaI	TCTAGA	1 cut(s)	310
XspI	CTAG	2 cut(s)	218, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.