Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0024612

Physical Location & Seq

Genomic Coordinates Forward (+)

21299237 .. 21299537

Gene Structure 301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCATGAAATCGGTGTGAATAAAGAACTACATGGAGCTGGTTTGAACCCTGACGTGGCATGTTATCAGACTATGCTGAGAGGTTACATGGACTATGGACATTTAGAAGAAGGCATCAAGCTTTTTGAGCAGATCAATAAGTCTGGAGAGGCAGACAGGTTTATTTTGAGCTCAGCAGTGCATTGTTATAAATCTGTGGGAAAGGAACTTGAAGCTGAAAATGTTTTGCATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

79

Amino Acids

8.72

Weight (kDa)

5.4

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	17 - 49	1e-05	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024612)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g24340
rosa_multiflora	Rmu_co8286693.1_g000001
rosa_samantha	Rh1BG428900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	46, 212
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	4 cut(s)	38, 121, 171, 215
AluI	AGCT	4 cut(s)	38, 121, 171, 215
Alw21I	GWGCWC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	173
BlpI	GCTNAGC	1 cut(s)	172
BmgBI	CACGTC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	68, 186
BsiHKAI	GWGCWC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	132
Bsp1720I	GCTNAGC	1 cut(s)	172
BspCNI	CTCAG	2 cut(s)	69, 185
BspHI	TCATGA	1 cut(s)	233
BssMI	GATC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	77, 172
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
CciI	TCATGA	1 cut(s)	233
CviAII	CATG	5 cut(s)	5, 32, 60, 88, 234
CviJI	RGCY	4 cut(s)	38, 121, 171, 215
CviKI_1	RGCY	4 cut(s)	38, 121, 171, 215
DdeI	CTNAG	2 cut(s)	77, 172
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	5 cut(s)	8, 35, 63, 91, 237
FaiI	YATR	8 cut(s)	6, 33, 61, 74, 89, 96, 189, 235
FatI	CATG	5 cut(s)	4, 31, 59, 87, 233
FriOI	GRGCYC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	165
Hin1II	CATG	5 cut(s)	8, 35, 63, 91, 237
HindIII	AAGCTT	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	2 cut(s)	144, 234
HpyAV	CCTTC	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	3 cut(s)	4, 181, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	2 cut(s)	77, 172
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	5 cut(s)	8, 35, 63, 91, 237
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	4 cut(s)	24, 63, 129, 142
LweI	GCATC	1 cut(s)	123
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	173
MnlI	CCTC	2 cut(s)	74, 142
Mph1103I	ATGCAT	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	5 cut(s)	8, 35, 63, 91, 237
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	63
PagI	TCATGA	1 cut(s)	233
PctI	GAATGC	1 cut(s)	229
PsiI	TTATAA	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	173
SacI	GAGCTC	1 cut(s)	173
Sau3AI	GATC	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	7 cut(s)	40, 57, 85, 123, 161, 173, 217
SfaNI	GCATC	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	173
TaiI	ACGT	1 cut(s)	57
TscAI	CASTG	1 cut(s)	183
TspDTI	ATGAA	2 cut(s)	21, 222
TspRI	CASTG	1 cut(s)	183
XceI	RCATGY	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.