Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8286693.1

Orthogroup ID

OG0024612

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 829

Gene Structure 829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8286693.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 635 bp

gaaaaaggcatgaagcttccatgctattcaccaaaatgcgtgaaagcataaaacctggaatggtaagttacaatataatgatgaatgtatatgctactggaggactttatcaagaagctgagaaattattcaaagccatgaagcaagatggttggttacctgactcattcacttacctctccctagttcgagcttacacagagaatttgaaatattcagaagcagaggaaaccattaattctatgcaagaagacggtgtctatccttcatgttcacattttaacctcattctctctgcttttgccaaaatgggattgataggggaagcagaaagagtttatgaggaactacttgcagcaggtttaagcccagatgcagcttgttatgggactatgctgcgaggttacatggactacggacacgtggaagaaggcatcaagttctatgaacaaataagtgagtctataaaggcagacaggtttattttgagtgcagctgtgcatttttacagatctgtaggaaaggaagtagaagctcagagtgttttgcattccatgagtagcatgggaatttcatttctggagaacctagaagttggatccaagctaaaatctccgccaatgttgcagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

210

Amino Acids

23.63

Weight (kDa)

5.31

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024612)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g24340
rosa_multiflora	Rmu_co8286693.1_g000001
rosa_samantha	Rh1BG428900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	349
AciI	CCGC	1 cut(s)	616
AclWI	GGATC	2 cut(s)	593, 606
AcsI	RAATTY	2 cut(s)	204, 569
AcvI	CACGTG	1 cut(s)	423
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	132, 210
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	7 cut(s)	16, 118, 193, 379, 496, 535, 606
AluI	AGCT	7 cut(s)	16, 118, 193, 379, 496, 535, 606
AlwI	GGATC	2 cut(s)	593, 606
ApeKI	GCWGC	4 cut(s)	355, 376, 396, 493
ApoI	RAATTY	2 cut(s)	204, 569
AseI	ATTAAT	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	21
BamHI	GGATCC	1 cut(s)	598
BbrPI	CACGTG	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	4 cut(s)	367, 383, 388, 505
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	56
BfaI	CTAG	2 cut(s)	184, 589
BfmI	CTRYAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	4 cut(s)	356, 377, 397, 494
BlsI	GCNGC	4 cut(s)	357, 378, 398, 495
Bme1390I	CCNGG	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	363, 443
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	2 cut(s)	119, 601
BsaAI	YACGTR	1 cut(s)	423
Bse1I	ACTGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	110, 550
BseNI	ACTGG	1 cut(s)	102
BseXI	GCAGC	4 cut(s)	367, 383, 388, 505
BsgI	GTGCAG	1 cut(s)	512
BslFI	GGGAC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	549
Bsp143I	GATC	2 cut(s)	511, 598
BspACI	CCGC	1 cut(s)	616
BspCNI	CTCAG	2 cut(s)	111, 549
BspLI	GGNNCC	1 cut(s)	600
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	593, 606
BsrI	ACTGG	1 cut(s)	102
BssMI	GATC	2 cut(s)	511, 598
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	119, 536
BstEII	GGTNACC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	514, 601
BstMBI	GATC	2 cut(s)	511, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	624
BstNI	CCWGG	1 cut(s)	56
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	515
BstV1I	GCAGC	4 cut(s)	367, 383, 388, 505
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	2 cut(s)	511, 598
BstYI	RGATCY	2 cut(s)	511, 598
BveI	ACCTGC	1 cut(s)	349
CviAII	CATG	7 cut(s)	10, 21, 138, 269, 408, 555, 564
CviJI	RGCY	9 cut(s)	16, 118, 136, 193, 368, 379, 496, 535, 606
CviKI_1	RGCY	9 cut(s)	16, 118, 136, 193, 368, 379, 496, 535, 606
DdeI	CTNAG	2 cut(s)	119, 536
DpnI	GATC	2 cut(s)	513, 600
DpnII	GATC	2 cut(s)	511, 598
EciI	GGCGGA	1 cut(s)	605
Eco72I	CACGTG	1 cut(s)	423
Eco91I	GGTNACC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	54
FaeI	CATG	7 cut(s)	13, 24, 141, 272, 411, 558, 567
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	7 cut(s)	9, 20, 137, 268, 407, 554, 563
Fnu4HI	GCNGC	4 cut(s)	356, 377, 397, 494
Fsp4HI	GCNGC	4 cut(s)	356, 377, 397, 494
FspBI	CTAG	2 cut(s)	184, 589
GluI	GCNGC	4 cut(s)	356, 377, 397, 494
GsuI	CTGGAG	2 cut(s)	119, 601
Hin1II	CATG	7 cut(s)	13, 24, 141, 272, 411, 558, 567
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	2 cut(s)	163, 460
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	219, 539
Hpy188III	TCNNGA	2 cut(s)	112, 580
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	275, 424
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	422
HpyCH4V	TGCA	7 cut(s)	246, 355, 376, 493, 501, 549, 627
HpyF10VI	GCNNNNNNNGC	1 cut(s)	624
HpyF3I	CTNAG	2 cut(s)	119, 536
HpySE526I	ACGT	1 cut(s)	422
Hsp92II	CATG	7 cut(s)	13, 24, 141, 272, 411, 558, 567
Kzo9I	GATC	2 cut(s)	511, 598
LpnPI	CCDG	8 cut(s)	41, 68, 83, 173, 344, 383, 462, 565
Lsp1109I	GCAGC	4 cut(s)	367, 383, 388, 505
LweI	GCATC	2 cut(s)	363, 443
MaeI	CTAG	2 cut(s)	184, 589
MaeII	ACGT	1 cut(s)	422
MaeIII	GTNAC	3 cut(s)	67, 155, 403
MalI	GATC	2 cut(s)	513, 600
MboI	GATC	2 cut(s)	511, 598
MboII	GAAGA	2 cut(s)	262, 439
MflI	RGATCY	2 cut(s)	511, 598
MluCI	AATT	4 cut(s)	124, 204, 237, 569
MlyI	GAGTC	2 cut(s)	157, 469
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	6 cut(s)	94, 187, 219, 295, 336, 394
MroXI	GAANNNNTTC	1 cut(s)	127
MseI	TTAA	3 cut(s)	236, 281, 364
MslI	CAYNNNNRTG	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	496
MspR9I	CCNGG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	624
NdeII	GATC	2 cut(s)	511, 598
NlaIII	CATG	7 cut(s)	13, 24, 141, 272, 411, 558, 567
NlaIV	GGNNCC	1 cut(s)	600
PctI	GAATGC	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	127
PflFI	GACNNNGTC	1 cut(s)	256
PkrI	GCNGC	4 cut(s)	357, 378, 398, 495
PleI	GAGTC	2 cut(s)	157, 468
PmaCI	CACGTG	1 cut(s)	423
PmlI	CACGTG	1 cut(s)	423
PpsI	GAGTC	2 cut(s)	157, 468
Ppu21I	YACGTR	1 cut(s)	423
PshBI	ATTAAT	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	54
PspCI	CACGTG	1 cut(s)	423
PspEI	GGTNACC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	600
PsuI	RGATCY	2 cut(s)	511, 598
PsyI	GACNNNGTC	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	34
SaqAI	TTAA	3 cut(s)	236, 281, 364
SatI	GCNGC	4 cut(s)	356, 377, 397, 494
Sau3AI	GATC	2 cut(s)	511, 598
SchI	GAGTC	2 cut(s)	157, 469
ScrFI	CCNGG	1 cut(s)	56
SfaNI	GCATC	2 cut(s)	363, 443
SfcI	CTRYAG	1 cut(s)	515
SmiMI	CAYNNNNRTG	1 cut(s)	34
Sse9I	AATT	4 cut(s)	124, 204, 237, 569
SsiI	CCGC	1 cut(s)	616
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	2 cut(s)	184, 589
StyD4I	CCNGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	425
TaqI	TCGA	1 cut(s)	189
TasI	AATT	4 cut(s)	124, 204, 237, 569
Tru1I	TTAA	3 cut(s)	236, 281, 364
Tru9I	TTAA	3 cut(s)	236, 281, 364
TseI	GCWGC	4 cut(s)	355, 376, 396, 493
TspDTI	ATGAA	6 cut(s)	26, 97, 154, 257, 461, 563
TspGWI	ACGGA	1 cut(s)	431
Tth111I	GACNNNGTC	1 cut(s)	256
VspI	ATTAAT	1 cut(s)	236
XapI	RAATTY	2 cut(s)	204, 569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	2 cut(s)	184, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.