pycom02g02750

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
1737556 .. 1738953
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02750.1

Sequence Viewer

Length: 1398 bp
ATGTCTGTGTCTGCGTGGGCTATCTTAAGAGAATGCTTTCCACTGAGTGTCTTAAGACACATTGATTGGATCTATCCAGTGGTAGTCGGTTCCATTTACTATCCTTACATCAAAATCAAATTCAGTGACTGTTCTGGAGAGCAGAGTCTAACGCACAGTGAAGCCTTCTTCGCCATTCACAACTACCTGAGGTCCAAAGCTTCCAAAGAAGCAAAGCGGCTGCGTGGTTACGTGAAGAAAAACCAGTCCCTTGTGCTTAGCATGGATCTTAAGGAAGAGGTTGCTGACGAGTTTCAAGGAGCCAAAGTATGGTGGGCTTTAGAGAAAACCATTGCTATGCAACATTTGACGCACCCTCCGGTTCCTTGTGAGAGATGGCACTACAAGCTCACTTTCCATAAGACGCACAGGGCTCTCATTGTTGGGCCTTATATCAAACATGTCATGAAAGAGGGCAATGCAACTAAGATGGGAAATCGGGAAAGGAAGCTTTATACCAACAACGGGGCACGTTGGAGCCATGTTATGTTTGAGCACCCTGCAACATTTAAGACACTAGCCATGGATCCGGTGATGAAGCAGGAGATTATGGATGATTTAATGGCATTCAGCAAAGCGGAAGAGTTTTATAAAAGCACTGGGAGGGCGTGGAAGCGAGGGTACCTCCTTTATGGCCCCCCGGGAATTGGGAAGTCCACCATGATTGCCGCCATGGCAAATCTTTTGGGCTACAATCTTTACGATCTTGAATTGACTTCAGTTAAGAACAACATCGAGCTGAGGAAGCTACTGCTTGAAACATCGAACAAGTCTGTTATTATGATTGAAGACATTGATTGTTCGCTTGATCTCACGGGGCAAAGGAGTAAGAAGAATGATAAAGTGATAGAGAAGGAAGATACAGGTGATGGAAAGGAAAAGGAAGCAAATATACTGAGCCATGTTACTCTTTCAGGGCTTCTGAATTTCATTGACGGGCTCTGGTCAGCCTATAAAGGAGAGAGGCTGATAGTATTCACCACCAACTATGTGGAGAAACTCGATGCTGCACTTACTCGAAAAGGAAGGTTGGACAAGCACATAGAACTATCATACTGCACCTTTGAAGCATACAAGGTGCTGGCTAGAAACTACCTTAAACTTGAATCACACCATCTATTCCCCGCGATTTGTGAGTTGCTGGGGGAAACTAATGTGGTTCCAGCAGATGTTGCGGAGCATTTGATGCCCAAGACACTTTCTCGGAACGTTGACCTCTGCCTGCAGAACCTGATCCAAGCTCTCAAGAAGGAGAAAGAGAACGGAAAGTTAATAGCCGAGGAAGAAAGGAAAGACGGAAACAATCAGCTGAAGAGGAAGTGCTTGACAAGCACACAAGATCGATTTGATAGAAGATAA

Protein Analysis

466

Amino Acids

53.45

Weight (kDa)

9.01

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 14 - 107 6.9e-18 Domain associated at C-terminal with AAA
AAA PF00004 221 - 364 5.6e-16 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 366 - 434 5.6e-28 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022356)

Species Orthologous Gene IDs
malus_domestica MD02G1033500.v1.1 MD09G1044000.v1.1
pyrus_communis pycom02g02750 pycom111g03420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 630
Acc65I GGTACC 1 cut(s) 660
AccB1I GGYRCC 1 cut(s) 660
AccB7I CCANNNNNTGG 1 cut(s) 309
AccII CGCG 1 cut(s) 1166
AciI CCGC 5 cut(s) 217, 617, 708, 1164, 1214
AclI AACGTT 1 cut(s) 1248
AclWI GGATC 5 cut(s) 77, 273, 560, 573, 1267
AcsI RAATTY 2 cut(s) 119, 964
AcuI CTGAAG 2 cut(s) 741, 1370
AdeI CACNNNGTG 1 cut(s) 47
AfaI GTAC 1 cut(s) 662
AfiI CCNNNNNNNGG 3 cut(s) 309, 504, 686
AflII CTTAAG 3 cut(s) 25, 52, 269
AflIII ACRYGT 1 cut(s) 439
AgsI TTSAA 6 cut(s) 296, 749, 797, 827, 1106, 1145
AluBI AGCT 7 cut(s) 200, 388, 490, 778, 787, 1280, 1348
AluI AGCT 7 cut(s) 200, 388, 490, 778, 787, 1280, 1348
Alw21I GWGCWC 1 cut(s) 537
AlwI GGATC 5 cut(s) 77, 273, 560, 573, 1267
AlwNI CAGNNNCTG 2 cut(s) 129, 1270
Ama87I CYCGRG 1 cut(s) 679
AoxI GGCC 2 cut(s) 425, 673
ApeKI GCWGC 2 cut(s) 220, 1046
ApoI RAATTY 2 cut(s) 119, 964
Asp700I GAANNNNTTC 1 cut(s) 36
Asp718I GGTACC 1 cut(s) 660
AspS9I GGNCC 3 cut(s) 192, 425, 674
AsuC2I CCSGG 2 cut(s) 680, 681
AsuHPI GGTGA 3 cut(s) 583, 917, 1009
AvaI CYCGRG 1 cut(s) 679
AvaII GGWCC 1 cut(s) 192
AxyI CCTNAGG 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 511
BamHI GGATCC 1 cut(s) 565
BanI GGYRCC 1 cut(s) 660
BanII GRGCYC 2 cut(s) 415, 981
BarI GAAGNNNNNNTAC 4 cut(s) 644, 676, 915, 947
BbsI GAAGAC 1 cut(s) 834
Bbv12I GWGCWC 1 cut(s) 537
BbvCI CCTCAGC 1 cut(s) 779
BbvI GCAGC 2 cut(s) 207, 1033
BccI CCATC 4 cut(s) 369, 463, 902, 1161
BcnI CCSGG 2 cut(s) 680, 681
BfaI CTAG 2 cut(s) 557, 1125
BfmI CTRYAG 1 cut(s) 1262
BfrI CTTAAG 3 cut(s) 25, 52, 269
BglI GCCNNNNNGGC 1 cut(s) 713
BisI GCNGC 4 cut(s) 218, 221, 708, 1047
BlpI GCTNAGC 1 cut(s) 257
BlsI GCNGC 4 cut(s) 219, 222, 709, 1048
Bme1390I CCNGG 2 cut(s) 680, 681
Bme18I GGWCC 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 679
BmgT120I GGNCC 3 cut(s) 192, 425, 674
BmiI GGNNCC 8 cut(s) 91, 301, 363, 518, 567, 662, 676, 1200
BmrFI CCNGG 2 cut(s) 680, 681
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 2 cut(s) 1033, 1215
BmuI ACTGGG 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 834
BplI GAGNNNNNCTC 2 cut(s) 648, 680
BpmI CTGGAG 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 779
Bpu1102I GCTNAGC 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 1268
BpuMI CCSGG 2 cut(s) 680, 681
Bsa29I ATCGAT 1 cut(s) 1381
BsaAI YACGTR 1 cut(s) 232
BsaJI CCNNGG 5 cut(s) 561, 678, 679, 711, 1317
BsaWI WCCGGW 2 cut(s) 358, 568
BsaXI ACNNNNNCTCC 4 cut(s) 291, 321, 340, 370
Bsc4I CCNNNNNNNGG 3 cut(s) 309, 504, 686
Bse1I ACTGG 3 cut(s) 77, 244, 643
Bse21I CCTNAGG 1 cut(s) 188
Bse3DI GCAATG 2 cut(s) 330, 463
BseCI ATCGAT 1 cut(s) 1381
BseDI CCNNGG 5 cut(s) 561, 678, 679, 711, 1317
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 3 cut(s) 309, 504, 686
BseMI GCAATG 2 cut(s) 330, 463
BseMII CTCAG 4 cut(s) 35, 179, 770, 926
BseNI ACTGG 3 cut(s) 77, 244, 643
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 2 cut(s) 207, 1033
BseYI CCCAGC 1 cut(s) 1180
BsgI GTGCAG 2 cut(s) 1032, 1081
Bsh1236I CGCG 1 cut(s) 1166
BshFI GGCC 2 cut(s) 427, 675
BshNI GGYRCC 1 cut(s) 660
BshVI ATCGAT 1 cut(s) 1381
BsiHKAI GWGCWC 1 cut(s) 537
BsiHKCI CYCGRG 1 cut(s) 679
BsiSI CCGG 3 cut(s) 359, 569, 680
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 3 cut(s) 309, 504, 686
BsmFI GGGAC 1 cut(s) 232
BsmI GAATGC 2 cut(s) 38, 605
BsnI GGCC 2 cut(s) 427, 675
BsoBI CYCGRG 1 cut(s) 679
Bsp1286I GDGCHC 4 cut(s) 415, 511, 537, 981
Bsp143I GATC 7 cut(s) 69, 265, 565, 742, 847, 1272, 1378
Bsp1720I GCTNAGC 1 cut(s) 257
Bsp19I CCATGG 2 cut(s) 561, 711
BspACI CCGC 5 cut(s) 217, 617, 708, 1164, 1214
BspANI GGCC 2 cut(s) 427, 675
BspCNI CTCAG 4 cut(s) 36, 180, 771, 927
BspDI ATCGAT 1 cut(s) 1381
BspFNI CGCG 1 cut(s) 1166
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 8 cut(s) 91, 301, 363, 518, 567, 662, 676, 1200
BspMAI CTGCAG 1 cut(s) 1266
BspPI GGATC 5 cut(s) 77, 273, 560, 573, 1267
BspT107I GGYRCC 1 cut(s) 660
BspTI CTTAAG 3 cut(s) 25, 52, 269
BsrDI GCAATG 2 cut(s) 330, 463
BsrI ACTGG 3 cut(s) 77, 244, 643
BssECI CCNNGG 5 cut(s) 561, 678, 679, 711, 1317
BssMI GATC 7 cut(s) 69, 265, 565, 742, 847, 1272, 1378
BssT1I CCWWGG 2 cut(s) 561, 711
Bst4CI ACNGT 2 cut(s) 131, 158
Bst6I CTCTTC 3 cut(s) 270, 615, 1346
BstAFI CTTAAG 3 cut(s) 25, 52, 269
BstAPI GCANNNNNTGC 2 cut(s) 1211, 1225
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 1122, 1262
BstDEI CTNAG 6 cut(s) 44, 188, 257, 465, 779, 935
BstDSI CCRYGG 2 cut(s) 561, 711
BstF5I GGATG 1 cut(s) 598
BstFNI CGCG 1 cut(s) 1166
BstKTI GATC 7 cut(s) 72, 268, 568, 745, 850, 1275, 1381
BstMBI GATC 7 cut(s) 69, 265, 565, 742, 847, 1272, 1378
BstMWI GCNNNNNNNGC 7 cut(s) 170, 385, 713, 784, 1211, 1225, 1368
BstNSI RCATGY 1 cut(s) 443
BstSCI CCNGG 2 cut(s) 678, 679
BstSFI CTRYAG 1 cut(s) 1262
BstSLI GKGCMC 1 cut(s) 511
BstUI CGCG 1 cut(s) 1166
BstV1I GCAGC 2 cut(s) 207, 1033
BstV2I GAAGAC 1 cut(s) 834
BstX2I RGATCY 3 cut(s) 69, 265, 565
BstXI CCANNNNNNTGG 1 cut(s) 1030
BstYI RGATCY 3 cut(s) 69, 265, 565
Bsu15I ATCGAT 1 cut(s) 1381
Bsu36I CCTNAGG 1 cut(s) 188
BsuRI GGCC 2 cut(s) 427, 675
BsuTUI ATCGAT 1 cut(s) 1381
BtgI CCRYGG 2 cut(s) 561, 711
BtsCI GGATG 1 cut(s) 598
BtsIMutI CAGTG 5 cut(s) 41, 84, 130, 163, 636
Cac8I GCNNGC 2 cut(s) 1122, 1262
CaiI CAGNNNCTG 2 cut(s) 129, 1270
CciI TCATGA 1 cut(s) 444
Cfr13I GGNCC 3 cut(s) 192, 425, 674
Cfr9I CCCGGG 1 cut(s) 679
ClaI ATCGAT 1 cut(s) 1381
CseI GACGC 2 cut(s) 358, 412
Csp6I GTAC 1 cut(s) 661
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
CviAII CATG 8 cut(s) 262, 440, 445, 521, 562, 700, 712, 941
CviQI GTAC 1 cut(s) 661
DdeI CTNAG 6 cut(s) 44, 188, 257, 465, 779, 935
DpnI GATC 7 cut(s) 71, 267, 567, 744, 849, 1274, 1380
DpnII GATC 7 cut(s) 69, 265, 565, 742, 847, 1272, 1378
DraIII CACNNNGTG 1 cut(s) 47
Eam1104I CTCTTC 3 cut(s) 270, 615, 1346
EarI CTCTTC 3 cut(s) 270, 615, 1346
Eco130I CCWWGG 2 cut(s) 561, 711
Eco24I GRGCYC 2 cut(s) 415, 981
Eco47I GGWCC 1 cut(s) 192
Eco57I CTGAAG 2 cut(s) 741, 1370
Eco81I CCTNAGG 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 679
EcoT14I CCWWGG 2 cut(s) 561, 711
EcoT38I GRGCYC 2 cut(s) 415, 981
ErhI CCWWGG 2 cut(s) 561, 711
FaeI CATG 8 cut(s) 265, 443, 448, 524, 565, 703, 715, 944
FaqI GGGAC 1 cut(s) 232
FatI CATG 8 cut(s) 261, 439, 444, 520, 561, 699, 711, 940
FauI CCCGC 1 cut(s) 1171
Fnu4HI GCNGC 4 cut(s) 218, 221, 708, 1047
FokI GGATG 1 cut(s) 605
FriOI GRGCYC 2 cut(s) 415, 981
Fsp4HI GCNGC 4 cut(s) 218, 221, 708, 1047
FspBI CTAG 2 cut(s) 557, 1125
GluI GCNGC 4 cut(s) 218, 221, 708, 1047
GsaI CCCAGC 1 cut(s) 1184
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 2 cut(s) 427, 675
HapII CCGG 3 cut(s) 359, 569, 680
HgaI GACGC 2 cut(s) 358, 412
Hin1II CATG 8 cut(s) 265, 443, 448, 524, 565, 703, 715, 944
HincII GTYRAC 1 cut(s) 1252
HindII GTYRAC 1 cut(s) 1252
HindIII AAGCTT 2 cut(s) 198, 488
HinfI GANTC 2 cut(s) 145, 1145
HpaII CCGG 3 cut(s) 359, 569, 680
HphI GGTGA 3 cut(s) 583, 917, 1009
Hpy166II GTNNAC 2 cut(s) 696, 1252
Hpy188I TCNGA 2 cut(s) 963, 1245
Hpy188III TCNNGA 5 cut(s) 135, 445, 479, 746, 1285
Hpy8I GTNNAC 2 cut(s) 696, 1252
HpyAV CCTTC 4 cut(s) 175, 886, 1059, 1282
HpyCH4III ACNGT 2 cut(s) 131, 158
HpyCH4IV ACGT 3 cut(s) 231, 511, 1248
HpyCH4V TGCA 6 cut(s) 340, 461, 542, 1049, 1098, 1264
HpyF10VI GCNNNNNNNGC 7 cut(s) 170, 385, 713, 784, 1211, 1225, 1368
HpyF3I CTNAG 6 cut(s) 44, 188, 257, 465, 779, 935
HpySE526I ACGT 3 cut(s) 231, 511, 1248
Hsp92II CATG 8 cut(s) 265, 443, 448, 524, 565, 703, 715, 944
KpnI GGTACC 1 cut(s) 664
Kzo9I GATC 7 cut(s) 69, 265, 565, 742, 847, 1272, 1378
LmnI GCTCC 3 cut(s) 299, 516, 1216
Lsp1109I GCAGC 2 cut(s) 207, 1033
LweI GCATC 2 cut(s) 1033, 1215
MaeI CTAG 2 cut(s) 557, 1125
MaeII ACGT 3 cut(s) 231, 511, 1248
MaeIII GTNAC 3 cut(s) 125, 227, 943
MalI GATC 7 cut(s) 71, 267, 567, 744, 849, 1274, 1380
MboI GATC 7 cut(s) 69, 265, 565, 742, 847, 1272, 1378
MboII GAAGA 9 cut(s) 160, 247, 287, 632, 839, 883, 908, 1334, 1363
MflI RGATCY 3 cut(s) 69, 265, 565
MhlI GDGCHC 4 cut(s) 415, 511, 537, 981
MluCI AATT 4 cut(s) 119, 684, 749, 964
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 2 cut(s) 494, 1050
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 8 cut(s) 26, 53, 270, 549, 599, 762, 1137, 1310
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 1348
MspCI CTTAAG 3 cut(s) 25, 52, 269
MspI CCGG 3 cut(s) 359, 569, 680
MspR9I CCNGG 2 cut(s) 680, 681
Mva1269I GAATGC 2 cut(s) 38, 605
MvnI CGCG 1 cut(s) 1166
MwoI GCNNNNNNNGC 7 cut(s) 170, 385, 713, 784, 1211, 1225, 1368
NciI CCSGG 2 cut(s) 680, 681
NcoI CCATGG 2 cut(s) 561, 711
NdeII GATC 7 cut(s) 69, 265, 565, 742, 847, 1272, 1378
NlaIII CATG 8 cut(s) 265, 443, 448, 524, 565, 703, 715, 944
NlaIV GGNNCC 8 cut(s) 91, 301, 363, 518, 567, 662, 676, 1200
NmeAIII GCCGAG 1 cut(s) 1342
NmuCI GTSAC 1 cut(s) 125
NspI RCATGY 1 cut(s) 443
PagI TCATGA 1 cut(s) 444
PciI ACATGT 1 cut(s) 439
PctI GAATGC 2 cut(s) 38, 605
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 1145
PflMI CCANNNNNTGG 1 cut(s) 309
PkrI GCNGC 4 cut(s) 219, 222, 709, 1048
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
Ppu21I YACGTR 1 cut(s) 232
PscI ACATGT 1 cut(s) 439
PsiI TTATAA 1 cut(s) 630
Psp1406I AACGTT 1 cut(s) 1248
PspFI CCCAGC 1 cut(s) 1180
PspN4I GGNNCC 8 cut(s) 91, 301, 363, 518, 567, 662, 676, 1200
PspPI GGNCC 3 cut(s) 192, 425, 674
PstI CTGCAG 1 cut(s) 1266
PstNI CAGNNNCTG 2 cut(s) 129, 1270
PsuI RGATCY 3 cut(s) 69, 265, 565
PvuII CAGCTG 1 cut(s) 1348
RsaI GTAC 1 cut(s) 662
RsaNI GTAC 1 cut(s) 661
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 8 cut(s) 26, 53, 270, 549, 599, 762, 1137, 1310
SatI GCNGC 4 cut(s) 218, 221, 708, 1047
Sau3AI GATC 7 cut(s) 69, 265, 565, 742, 847, 1272, 1378
Sau96I GGNCC 3 cut(s) 192, 425, 674
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 2 cut(s) 680, 681
SduI GDGCHC 4 cut(s) 415, 511, 537, 981
SfaNI GCATC 2 cut(s) 1033, 1215
SfcI CTRYAG 1 cut(s) 1262
SinI GGWCC 1 cut(s) 192
SmaI CCCGGG 1 cut(s) 681
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 4 cut(s) 25, 52, 269, 1283
SmoI CTYRAG 4 cut(s) 25, 52, 269, 1283
Sse9I AATT 4 cut(s) 119, 684, 749, 964
SsiI CCGC 5 cut(s) 217, 617, 708, 1164, 1214
SspMI CTAG 2 cut(s) 557, 1125
StyD4I CCNGG 2 cut(s) 678, 679
StyI CCWWGG 2 cut(s) 561, 711
TaaI ACNGT 2 cut(s) 131, 158
TaiI ACGT 3 cut(s) 234, 514, 1251
TaqI TCGA 5 cut(s) 774, 803, 1041, 1057, 1381
TasI AATT 4 cut(s) 119, 684, 749, 964
TauI GCSGC 2 cut(s) 220, 710
TfiI GAWTC 1 cut(s) 1145
Tru1I TTAA 8 cut(s) 26, 53, 270, 549, 599, 762, 1137, 1310
Tru9I TTAA 8 cut(s) 26, 53, 270, 549, 599, 762, 1137, 1310
TscAI CASTG 5 cut(s) 48, 84, 130, 163, 643
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 2 cut(s) 220, 1046
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 461, 590, 958
TspGWI ACGGA 2 cut(s) 1317, 1350
TspMI CCCGGG 1 cut(s) 679
TspRI CASTG 5 cut(s) 48, 84, 130, 163, 643
Van91I CCANNNNNTGG 1 cut(s) 309
Vha464I CTTAAG 3 cut(s) 25, 52, 269
VpaK11BI GGWCC 1 cut(s) 192
XapI RAATTY 2 cut(s) 119, 964
XceI RCATGY 1 cut(s) 443
XcmI CCANNNNNNNNNTGG 1 cut(s) 1027
XmaI CCCGGG 1 cut(s) 679
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 2 cut(s) 557, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.