Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0029216

Physical Location & Seq

Genomic Coordinates Forward (+)

5905328 .. 5906041

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGTTTCGGTGGGAATATATATATATATATATATTTGTCTACACAGTTTAATTTGGCACGGCGGAGGGCCACGGTCTCATCGCGGACCACCATGGAGGAGGAAGCGTTGGGGCCGATTGGAAAGGGAGGATGAAGTTGTCCTATGGGGAAGACAGTGGAGAAGCCATGGTTGGGTTGCTGGATTTATGGTGGAGGAGGAAGAGAAGAAAGGGAGAGAGAGGCTACGAGAGAGGGTAGACAATGGAATCAATGAAAAAGTTAAGGATTATTGTTGTCCAAAAATTTATAATTTTGTGTTCCATGGGCTGGACCTGCCCATGGAGATCAAGAAGCTGAACAAGGATGTGATAGCTGGAAGTGGATACATGGCTCCCGGCAGCTTCAACCCTCTCTATGAAGATTTGGAGCTCTACGACATGGGATCGCGTCAGGCTGTCGAAAGCTTTTGCTCTCAGTTGGATGCTTCTTCCTACCACATAACAACATGGGTTAAAATTTTTCCAAGTGACGGGAACACCATGACACGTGGTGTTCCCTCACACATTAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

185

Amino Acids

21.44

Weight (kDa)

8.65

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029216)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g08480 pycom02g08510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
Acc36I	ACCTGC	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccI	GTMKAC	2 cut(s)	40, 237
AccII	CGCG	2 cut(s)	84, 427
AciI	CCGC	2 cut(s)	63, 84
AclWI	GGATC	1 cut(s)	430
AcsI	RAATTY	2 cut(s)	282, 495
AcvI	CACGTG	1 cut(s)	527
AdeI	CACNNNGTG	1 cut(s)	530
AfiI	CCNNNNNNNGG	4 cut(s)	172, 307, 319, 509
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	1 cut(s)	385
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
AluBI	AGCT	5 cut(s)	334, 353, 381, 409, 444
AluI	AGCT	5 cut(s)	334, 353, 381, 409, 444
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	430
AoxI	GGCC	2 cut(s)	68, 112
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	2 cut(s)	282, 495
AspS9I	GGNCC	4 cut(s)	68, 86, 112, 310
AsuC2I	CCSGG	1 cut(s)	375
AvaII	GGWCC	2 cut(s)	86, 310
BanII	GRGCYC	1 cut(s)	411
BbrPI	CACGTG	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	390
BceAI	ACGGC	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	321
BfuI	GTATCC	1 cut(s)	356
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	2 cut(s)	86, 310
BmgT120I	GGNCC	4 cut(s)	68, 86, 112, 310
BmiI	GGNNCC	2 cut(s)	113, 372
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	5 cut(s)	71, 92, 166, 301, 318
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	4 cut(s)	172, 307, 319, 509
BseDI	CCNNGG	5 cut(s)	71, 92, 166, 301, 318
BseGI	GGATG	3 cut(s)	136, 349, 466
BseLI	CCNNNNNNNGG	4 cut(s)	172, 307, 319, 509
BseMII	CTCAG	1 cut(s)	467
BseRI	GAGGAG	2 cut(s)	112, 209
BseXI	GCAGC	1 cut(s)	390
Bsh1236I	CGCG	2 cut(s)	84, 427
BshFI	GGCC	2 cut(s)	70, 114
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	4 cut(s)	172, 307, 319, 509
BsmAI	GTCTC	1 cut(s)	81
BsnI	GGCC	2 cut(s)	70, 114
Bso31I	GGTCTC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	324, 422
Bsp19I	CCATGG	4 cut(s)	92, 166, 301, 318
BspACI	CCGC	2 cut(s)	63, 84
BspANI	GGCC	2 cut(s)	70, 114
BspCNI	CTCAG	1 cut(s)	466
BspFNI	CGCG	2 cut(s)	84, 427
BspLI	GGNNCC	2 cut(s)	113, 372
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	430
BspTNI	GGTCTC	1 cut(s)	81
BssECI	CCNNGG	5 cut(s)	71, 92, 166, 301, 318
BssMI	GATC	2 cut(s)	324, 422
BssT1I	CCWWGG	4 cut(s)	92, 166, 301, 318
Bst4CI	ACNGT	3 cut(s)	47, 75, 156
Bst6I	CTCTTC	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	527
BstDEI	CTNAG	1 cut(s)	453
BstDSI	CCRYGG	5 cut(s)	71, 92, 166, 301, 318
BstF5I	GGATG	3 cut(s)	136, 349, 466
BstFNI	CGCG	2 cut(s)	84, 427
BstKTI	GATC	2 cut(s)	327, 425
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	2 cut(s)	324, 422
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	373
BstUI	CGCG	2 cut(s)	84, 427
BstV1I	GCAGC	1 cut(s)	390
BstV2I	GAAGAC	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	70, 114
BtgI	CCRYGG	5 cut(s)	71, 92, 166, 301, 318
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	136, 349, 466
BtsIMutI	CAGTG	1 cut(s)	161
BveI	ACCTGC	1 cut(s)	321
Cfr13I	GGNCC	4 cut(s)	68, 86, 112, 310
CseI	GACGC	1 cut(s)	416
CviAII	CATG	8 cut(s)	93, 167, 302, 319, 367, 418, 486, 520
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	2 cut(s)	326, 424
DpnII	GATC	2 cut(s)	324, 422
DraIII	CACNNNGTG	1 cut(s)	530
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	4 cut(s)	92, 166, 301, 318
Eco24I	GRGCYC	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	86, 310
Eco53kI	GAGCTC	1 cut(s)	409
Eco72I	CACGTG	1 cut(s)	527
EcoICRI	GAGCTC	1 cut(s)	409
EcoT14I	CCWWGG	4 cut(s)	92, 166, 301, 318
EcoT38I	GRGCYC	1 cut(s)	411
ErhI	CCWWGG	4 cut(s)	92, 166, 301, 318
FaeI	CATG	8 cut(s)	96, 170, 305, 322, 370, 421, 489, 523
FatI	CATG	8 cut(s)	92, 166, 301, 318, 366, 417, 485, 519
FblI	GTMKAC	2 cut(s)	40, 237
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	3 cut(s)	143, 356, 473
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	379
GluI	GCNGC	1 cut(s)	379
HaeIII	GGCC	2 cut(s)	70, 114
HapII	CCGG	1 cut(s)	375
HgaI	GACGC	1 cut(s)	416
Hin1II	CATG	8 cut(s)	96, 170, 305, 322, 370, 421, 489, 523
HindIII	AAGCTT	1 cut(s)	442
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	1 cut(s)	375
Hpy166II	GTNNAC	2 cut(s)	41, 238
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	2 cut(s)	41, 238
HpyCH4III	ACNGT	3 cut(s)	47, 75, 156
HpyCH4IV	ACGT	1 cut(s)	526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	1 cut(s)	526
Hsp92II	CATG	8 cut(s)	96, 170, 305, 322, 370, 421, 489, 523
Kzo9I	GATC	2 cut(s)	324, 422
LmnI	GCTCC	2 cut(s)	376, 406
LpnPI	CCDG	6 cut(s)	165, 293, 326, 339, 388, 416
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	1 cut(s)	451
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	2 cut(s)	326, 424
MboI	GATC	2 cut(s)	324, 422
MboII	GAAGA	5 cut(s)	162, 212, 217, 410, 459
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	4 cut(s)	51, 282, 289, 495
MmeI	TCCRAC	1 cut(s)	438
MseI	TTAA	3 cut(s)	50, 261, 492
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	375
MvnI	CGCG	2 cut(s)	84, 427
MwoI	GCNNNNNNNGC	1 cut(s)	313
NciI	CCSGG	1 cut(s)	375
NcoI	CCATGG	4 cut(s)	92, 166, 301, 318
NdeII	GATC	2 cut(s)	324, 422
NlaIII	CATG	8 cut(s)	96, 170, 305, 322, 370, 421, 489, 523
NlaIV	GGNNCC	2 cut(s)	113, 372
NmuCI	GTSAC	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	246
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	380
PmaCI	CACGTG	1 cut(s)	527
PmlI	CACGTG	1 cut(s)	527
Ppu21I	YACGTR	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	411
PspCI	CACGTG	1 cut(s)	527
PspN4I	GGNNCC	2 cut(s)	113, 372
PspPI	GGNCC	4 cut(s)	68, 86, 112, 310
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	50, 261, 492
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	2 cut(s)	324, 422
Sau96I	GGNCC	4 cut(s)	68, 86, 112, 310
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	7 cut(s)	315, 336, 355, 383, 411, 446, 529
SfaNI	GCATC	1 cut(s)	451
SinI	GGWCC	2 cut(s)	86, 310
Sse9I	AATT	4 cut(s)	51, 282, 289, 495
SsiI	CCGC	2 cut(s)	63, 84
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	4 cut(s)	92, 166, 301, 318
TaaI	ACNGT	3 cut(s)	47, 75, 156
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	1 cut(s)	438
TasI	AATT	4 cut(s)	51, 282, 289, 495
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	3 cut(s)	50, 261, 492
Tru9I	TTAA	3 cut(s)	50, 261, 492
TscAI	CASTG	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	3 cut(s)	147, 267, 411
TspRI	CASTG	1 cut(s)	161
Van91I	CCANNNNNTGG	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	86, 310
XapI	RAATTY	2 cut(s)	282, 495
XmiI	GTMKAC	2 cut(s)	40, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.