Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0029216

Physical Location & Seq

Genomic Coordinates Forward (+)

5911136 .. 5911945

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAGATCAAGAAGCAGAACAAGGATGTGATAGCTGGAAGTGGATACATGGCTCCCGGCAGCTTCAACCCTCTCTATGAAGCTTTGGGGCTCTACGACATGGGATCGCGTCAGGCTGTCGACAGCTTTTGCTCTCAGTTGGATGCTTCTTCCTACCACAGCTTTGCTTCTGATCGTCTGATAATTTTACTACTTGTTCTCTACTTGAGTAAAATCTCATTTGGTTTCAATTTGCTTGATTTCAATATGGAGATCCGGGAAGAAAGAAAACGAGTTTGTGGGGTGAACACGCAATTGAAGCAAACATACATAGAGTTTGATGTGGGGTGGAAAGTTGTCACATCCCGGACCAATGGGAGGTTGTGCAATGTGAAGCACAGAGTACAATCCACGGAGGCAACCATTCGAATTTCGATTGCTACATTCCTTTTGGGACCTAAGGAGGAAGCGCTAGTGAAAGCTCCGCTGGAATTTGTGGATTCCGAGCACCCTCGAATTTACGTTCCTTTTACTTACGAAGATTACAGAAAGCTCATACTCTCCACAAAACTGCACGCTGGTGAAGTCCTTGCACTCATGCGCACCCCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

198

Amino Acids

22.35

Weight (kDa)

8.37

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029216)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g08480 pycom02g08510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	109
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	2 cut(s)	112, 247
AcsI	RAATTY	3 cut(s)	408, 470, 495
AfaI	GTAC	1 cut(s)	384
AfeI	AGCGCT	1 cut(s)	450
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	4 cut(s)	67, 229, 244, 298
AleI	CACNNNNGTG	1 cut(s)	558
AluBI	AGCT	7 cut(s)	35, 63, 83, 126, 162, 461, 532
AluI	AGCT	7 cut(s)	35, 63, 83, 126, 162, 461, 532
Alw21I	GWGCWC	1 cut(s)	489
AlwI	GGATC	2 cut(s)	112, 247
Aor51HI	AGCGCT	1 cut(s)	450
ApeKI	GCWGC	1 cut(s)	60
ApoI	RAATTY	3 cut(s)	408, 470, 495
AspLEI	GCGC	2 cut(s)	451, 582
AspS9I	GGNCC	2 cut(s)	348, 434
AsuC2I	CCSGG	3 cut(s)	57, 257, 346
AsuHPI	GGTGA	2 cut(s)	295, 572
AsuII	TTCGAA	1 cut(s)	406
AvaII	GGWCC	2 cut(s)	348, 434
AxyI	CCTNAGG	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	93
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	72
BciVI	GTATCC	1 cut(s)	38
BcnI	CCSGG	3 cut(s)	57, 257, 346
BfaI	CTAG	1 cut(s)	452
BfoI	RGCGCY	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	38
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	3 cut(s)	57, 257, 346
Bme18I	GGWCC	2 cut(s)	348, 434
BmgT120I	GGNCC	2 cut(s)	348, 434
BmiI	GGNNCC	2 cut(s)	54, 435
BmrFI	CCNGG	3 cut(s)	57, 257, 346
BmsI	GCATC	1 cut(s)	133
Bpu14I	TTCGAA	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	226
BpuMI	CCSGG	3 cut(s)	57, 257, 346
BsaJI	CCNNGG	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse21I	CCTNAGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	3 cut(s)	31, 148, 341
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	72
BsgI	GTGCAG	1 cut(s)	536
Bsh1236I	CGCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	489
BsiSI	CCGG	3 cut(s)	57, 256, 346
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	447
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	93, 489
Bsp143I	GATC	4 cut(s)	6, 104, 172, 252
BspACI	CCGC	1 cut(s)	464
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	54, 435
BspPI	GGATC	2 cut(s)	112, 247
BspT104I	TTCGAA	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	4 cut(s)	6, 104, 172, 252
BstBI	TTCGAA	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	2 cut(s)	135, 438
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	3 cut(s)	31, 148, 341
BstFNI	CGCG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	2 cut(s)	451, 582
BstKTI	GATC	4 cut(s)	9, 107, 175, 255
BstMBI	GATC	4 cut(s)	6, 104, 172, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstSCI	CCNGG	3 cut(s)	55, 255, 344
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
Bsu36I	CCTNAGG	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	31, 148, 341
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	2 cut(s)	451, 582
Cfr13I	GGNCC	2 cut(s)	348, 434
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	3 cut(s)	49, 100, 577
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	2 cut(s)	135, 438
DpnI	GATC	4 cut(s)	8, 106, 174, 254
DpnII	GATC	4 cut(s)	6, 104, 172, 252
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	2 cut(s)	348, 434
Eco47III	AGCGCT	1 cut(s)	450
Eco81I	CCTNAGG	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	3 cut(s)	52, 103, 580
FaiI	YATR	8 cut(s)	50, 78, 101, 248, 307, 311, 536, 578
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	3 cut(s)	48, 99, 576
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	3 cut(s)	38, 155, 328
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	61
FspAI	RTGCGCAY	1 cut(s)	581
FspBI	CTAG	1 cut(s)	452
FspI	TGCGCA	1 cut(s)	581
GlaI	GCGC	2 cut(s)	450, 581
GluI	GCNGC	1 cut(s)	61
HaeII	RGCGCY	1 cut(s)	452
HapII	CCGG	3 cut(s)	57, 256, 346
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	2 cut(s)	451, 582
Hin1II	CATG	3 cut(s)	52, 103, 580
Hin6I	GCGC	2 cut(s)	449, 580
HinP1I	GCGC	2 cut(s)	449, 580
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	81
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	3 cut(s)	57, 256, 346
HphI	GGTGA	2 cut(s)	295, 572
Hpy166II	GTNNAC	2 cut(s)	121, 286
Hpy188I	TCNGA	3 cut(s)	172, 180, 484
Hpy188III	TCNNGA	1 cut(s)	10
Hpy8I	GTNNAC	2 cut(s)	121, 286
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	3 cut(s)	366, 553, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	2 cut(s)	135, 438
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	3 cut(s)	52, 103, 580
HspAI	GCGC	2 cut(s)	449, 580
Kzo9I	GATC	4 cut(s)	6, 104, 172, 252
LmnI	GCTCC	2 cut(s)	58, 466
LpnPI	CCDG	7 cut(s)	21, 70, 98, 269, 359, 452, 543
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	4 cut(s)	8, 106, 174, 254
MboI	GATC	4 cut(s)	6, 104, 172, 252
MboII	GAAGA	3 cut(s)	141, 272, 530
MfeI	CAATTG	1 cut(s)	293
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	2 cut(s)	93, 489
MluCI	AATT	6 cut(s)	183, 229, 293, 408, 470, 495
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	5 cut(s)	81, 351, 388, 436, 501
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	3 cut(s)	57, 256, 346
MspR9I	CCNGG	3 cut(s)	57, 257, 346
MunI	CAATTG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	298
NciI	CCSGG	3 cut(s)	57, 257, 346
NdeII	GATC	4 cut(s)	6, 104, 172, 252
NlaIII	CATG	3 cut(s)	52, 103, 580
NlaIV	GGNNCC	2 cut(s)	54, 435
NmuCI	GTSAC	1 cut(s)	337
NsbI	TGCGCA	1 cut(s)	581
NspV	TTCGAA	1 cut(s)	406
OliI	CACNNNNGTG	1 cut(s)	558
PfeI	GAWTC	1 cut(s)	479
PfoI	TCCNGGA	2 cut(s)	255, 344
PkrI	GCNGC	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	434
Psp5II	RGGWCCY	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	54, 435
PspPI	GGNCC	2 cut(s)	348, 434
PspPPI	RGGWCCY	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	252
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
RseI	CAYNNNNRTG	1 cut(s)	558
SalI	GTCGAC	1 cut(s)	119
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	4 cut(s)	6, 104, 172, 252
Sau96I	GGNCC	2 cut(s)	348, 434
ScrFI	CCNGG	3 cut(s)	57, 257, 346
SduI	GDGCHC	2 cut(s)	93, 489
SfaNI	GCATC	1 cut(s)	133
SfuI	TTCGAA	1 cut(s)	406
SinI	GGWCC	2 cut(s)	348, 434
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	6 cut(s)	183, 229, 293, 408, 470, 495
SsiI	CCGC	1 cut(s)	464
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	3 cut(s)	55, 255, 344
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	4 cut(s)	120, 406, 413, 493
TasI	AATT	6 cut(s)	183, 229, 293, 408, 470, 495
TatI	WGTACW	1 cut(s)	382
TfiI	GAWTC	1 cut(s)	479
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	1 cut(s)	93
TspGWI	ACGGA	1 cut(s)	407
VpaK11BI	GGWCC	2 cut(s)	348, 434
XapI	RAATTY	3 cut(s)	408, 470, 495
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.