Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0029217

Physical Location & Seq

Genomic Coordinates Reverse (-)

10169305 .. 10169796

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGGCAAACAACGGCGGGAAAAGGAGCAGAGAGGAAGAGCACGAGAGCAAATCTGGGAGTGACAACATGGATGGTGCTTCTGGGGATCGATCAAGATGCCGCTGACAACCACCATCCTTGTAAGAAGAAGCGTTACCACCGACACACCCCTCAGCAAATCCAAGAACTTGAAGCGTATGATTATAAAACCCCCATCGTCACCGCCATCGCCATCGTCGCCTTACCGACCTCGCCAAGAAATTCGGTGACTGCTTCCTCCTTCACATGGGGACAGCGCAACCTCGTCGTCATCTCCTTACCTGAGCTCGCAAAGAGATGCTCCACACACAGGGAGTCGAATTCGGGACGAAGGAGGCGTGGCGGTATCTCTTGGAGTCATGTAGGCCGGGCAAGAGCTCAACACATTCTAAGCCGGCCTAAAGACCAGCTTGCGCTGGGTGCCAGCCTATCTGCTCAGCTGGAATGGATTGGCTGGGTGTCGGGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048519 GO:0048571 GO:0048573 GO:0048574 GO:0048579 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000242 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

164

Amino Acids

18.14

Weight (kDa)

10.72

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029217)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g13600 pycom05g31140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	440
AciI	CCGC	4 cut(s)	17, 102, 204, 363
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	241, 340
AfiI	CCNNNNNNNGG	2 cut(s)	267, 330
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	4 cut(s)	307, 398, 430, 460
AluI	AGCT	4 cut(s)	307, 398, 430, 460
Alw21I	GWGCWC	3 cut(s)	44, 309, 400
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	3 cut(s)	385, 416, 484
ApoI	RAATTY	2 cut(s)	241, 340
AspLEI	GCGC	2 cut(s)	279, 436
AspS9I	GGNCC	1 cut(s)	484
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	2 cut(s)	193, 259
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	2 cut(s)	309, 400
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BauI	CACGAG	1 cut(s)	43
Bbv12I	GWGCWC	3 cut(s)	44, 309, 400
BbvCI	CCTCAGC	1 cut(s)	153
BccI	CCATC	5 cut(s)	67, 123, 203, 215, 221
BceAI	ACGGC	1 cut(s)	30
BcgI	CGANNNNNNTGC	4 cut(s)	80, 114, 268, 302
BcnI	CCSGG	1 cut(s)	389
BisI	GCNGC	1 cut(s)	102
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	484
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	389
BmsI	GCATC	2 cut(s)	88, 308
Bpu10I	CCTNAGC	2 cut(s)	153, 303
Bpu1102I	GCTNAGC	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 330
Bse118I	RCCGGY	1 cut(s)	414
BseCI	ATCGAT	1 cut(s)	90
BseGI	GGATG	2 cut(s)	78, 115
BseLI	CCNNNNNNNGG	2 cut(s)	267, 330
BseMII	CTCAG	3 cut(s)	167, 294, 470
BseYI	CCCAGC	2 cut(s)	436, 474
BshFI	GGCC	3 cut(s)	387, 418, 486
BshNI	GGYRCC	1 cut(s)	440
BshVI	ATCGAT	1 cut(s)	90
BsiHKAI	GWGCWC	3 cut(s)	44, 309, 400
BsiSI	CCGG	2 cut(s)	388, 415
BslFI	GGGAC	2 cut(s)	285, 360
BslI	CCNNNNNNNGG	2 cut(s)	267, 330
BsmFI	GGGAC	2 cut(s)	285, 360
BsnI	GGCC	3 cut(s)	387, 418, 486
Bsp1286I	GDGCHC	3 cut(s)	44, 309, 400
Bsp143I	GATC	2 cut(s)	87, 91
Bsp1720I	GCTNAGC	1 cut(s)	456
BspACI	CCGC	4 cut(s)	17, 102, 204, 363
BspANI	GGCC	3 cut(s)	387, 418, 486
BspCNI	CTCAG	3 cut(s)	166, 295, 469
BspDI	ATCGAT	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	95
BspQI	GCTCTTC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	414
BssAI	RCCGGY	1 cut(s)	414
BssMI	GATC	2 cut(s)	87, 91
BssSI	CACGAG	1 cut(s)	43
Bst2BI	CACGAG	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	4 cut(s)	309, 416, 432, 445
BstDEI	CTNAG	4 cut(s)	153, 303, 410, 456
BstF5I	GGATG	2 cut(s)	78, 115
BstHHI	GCGC	2 cut(s)	279, 436
BstKTI	GATC	2 cut(s)	90, 94
BstMBI	GATC	2 cut(s)	87, 91
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 440
BstSCI	CCNGG	1 cut(s)	387
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	387, 418, 486
BsuTUI	ATCGAT	1 cut(s)	90
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	78, 115
Cac8I	GCNNGC	4 cut(s)	309, 416, 432, 445
CfoI	GCGC	2 cut(s)	279, 436
Cfr10I	RCCGGY	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	484
ClaI	ATCGAT	1 cut(s)	90
CspCI	CAANNNNNGTGG	2 cut(s)	101, 136
CviAII	CATG	3 cut(s)	69, 267, 380
DdeI	CTNAG	4 cut(s)	153, 303, 410, 456
DpnI	GATC	2 cut(s)	89, 93
DpnII	GATC	2 cut(s)	87, 91
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	2 cut(s)	307, 398
Eco24I	GRGCYC	2 cut(s)	309, 400
Eco53kI	GAGCTC	2 cut(s)	307, 398
EcoICRI	GAGCTC	2 cut(s)	307, 398
EcoRI	GAATTC	1 cut(s)	340
EcoT38I	GRGCYC	2 cut(s)	309, 400
FaeI	CATG	3 cut(s)	72, 270, 383
FaiI	YATR	5 cut(s)	70, 180, 186, 268, 381
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FaqI	GGGAC	2 cut(s)	285, 360
FatI	CATG	3 cut(s)	68, 266, 379
FauI	CCCGC	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	2 cut(s)	85, 102
FriOI	GRGCYC	2 cut(s)	309, 400
Fsp4HI	GCNGC	1 cut(s)	102
GlaI	GCGC	2 cut(s)	278, 435
GluI	GCNGC	1 cut(s)	102
GsaI	CCCAGC	2 cut(s)	440, 478
HaeIII	GGCC	3 cut(s)	387, 418, 486
HapII	CCGG	2 cut(s)	388, 415
HhaI	GCGC	2 cut(s)	279, 436
Hin1II	CATG	3 cut(s)	72, 270, 383
Hin6I	GCGC	2 cut(s)	277, 434
HinP1I	GCGC	2 cut(s)	277, 434
HinfI	GANTC	2 cut(s)	335, 376
HpaII	CCGG	2 cut(s)	388, 415
HphI	GGTGA	2 cut(s)	193, 259
Hpy188III	TCNNGA	2 cut(s)	95, 345
Hpy99I	CGWCG	2 cut(s)	221, 290
HpyAV	CCTTC	2 cut(s)	271, 345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 440
HpyF3I	CTNAG	4 cut(s)	153, 303, 410, 456
Hsp92II	CATG	3 cut(s)	72, 270, 383
HspAI	GCGC	2 cut(s)	277, 434
KroI	GCCGGC	1 cut(s)	414
KroNI	GCCGGC	1 cut(s)	416
Kzo9I	GATC	2 cut(s)	87, 91
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	26, 326
LweI	GCATC	2 cut(s)	88, 308
MaeIII	GTNAC	4 cut(s)	61, 134, 199, 247
MalI	GATC	2 cut(s)	89, 93
MboI	GATC	2 cut(s)	87, 91
MboII	GAAGA	2 cut(s)	49, 139
MhlI	GDGCHC	3 cut(s)	44, 309, 400
MluCI	AATT	2 cut(s)	241, 340
MlyI	GAGTC	2 cut(s)	344, 385
MnlI	CCTC	6 cut(s)	27, 162, 241, 268, 293, 348
MroNI	GCCGGC	1 cut(s)	414
MspA1I	CMGCKG	2 cut(s)	104, 460
MspI	CCGG	2 cut(s)	388, 415
MspR9I	CCNGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	218, 440
NaeI	GCCGGC	1 cut(s)	416
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	2 cut(s)	87, 91
NgoMIV	GCCGGC	1 cut(s)	414
NlaIII	CATG	3 cut(s)	72, 270, 383
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	3 cut(s)	61, 199, 247
PciSI	GCTCTTC	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PdiI	GCCGGC	1 cut(s)	416
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	2 cut(s)	343, 384
PpsI	GAGTC	2 cut(s)	343, 384
PsiI	TTATAA	1 cut(s)	186
Psp124BI	GAGCTC	2 cut(s)	309, 400
PspFI	CCCAGC	2 cut(s)	436, 474
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	460
SacI	GAGCTC	2 cut(s)	309, 400
SapI	GCTCTTC	1 cut(s)	32
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	87, 91
Sau96I	GGNCC	1 cut(s)	484
SchI	GAGTC	2 cut(s)	344, 385
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	3 cut(s)	44, 309, 400
SetI	ASST	7 cut(s)	233, 285, 304, 309, 400, 432, 462
SfaNI	GCATC	2 cut(s)	88, 308
Sse9I	AATT	2 cut(s)	241, 340
SsiI	CCGC	4 cut(s)	17, 102, 204, 363
SstI	GAGCTC	2 cut(s)	309, 400
StyD4I	CCNGG	1 cut(s)	387
TaqI	TCGA	2 cut(s)	90, 338
TasI	AATT	2 cut(s)	241, 340
TauI	GCSGC	1 cut(s)	104
TseFI	GTSAC	3 cut(s)	61, 199, 247
Tsp45I	GTSAC	3 cut(s)	61, 199, 247
XapI	RAATTY	2 cut(s)	241, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.