pycom02g18000

Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
16277221 .. 16280314
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
ATGCACAGTAAAATTTCGAAATTTCCCTTCTTTTTTTTTTTTCATCGAAACGAAATTTCCCATGTTAGCATGTGTATCTCGGTGGTTTTTGGAATTCGACATCGACTGTTTTCACACCGTCGAACGAATCCACCTCTTCCTTCCTGCTCCGGTCCTCCATTTTCGATAGCCTTCCTCATCTTTCAACGAGATTCTTCAATCAAACAAAACCACAGCCAACTCAGTAAATTGCTTTTCCACCTGTTCACACGCGAGAACCGCGACGCACCACCACTCCATCCTCAGATTGATTTTAAGTATGAAGAAGTACCTATTGGTGGAGCTGGCTTAGATTTGACTGGAGTGCCATTACCTGATGAGACCCTTTTGTCAGCTAAGACAATCGACGCAATTATTCTTCTCGAAGCAGTTGGGGGTAAATTTGGAATTTGTTGA

Protein Analysis

145

Amino Acids

16.23

Weight (kDa)

8.93

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0028872)

Species Orthologous Gene IDs
malus_domestica MD07G1089600.v1.1
pyrus_communis pycom02g18000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 367
AccII CGCG 2 cut(s) 252, 261
AciI CCGC 1 cut(s) 259
AcsI RAATTY 6 cut(s) 12, 20, 54, 93, 419, 426
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 185, 198
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 2 cut(s) 323, 374
AluI AGCT 2 cut(s) 323, 374
Alw26I GTCTC 1 cut(s) 353
ApoI RAATTY 6 cut(s) 12, 20, 54, 93, 419, 426
AspS9I GGNCC 1 cut(s) 152
AsuII TTCGAA 1 cut(s) 17
AvaII GGWCC 1 cut(s) 152
BccI CCATC 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 353
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 2 cut(s) 235, 296
BseNI ACTGG 1 cut(s) 343
Bsh1236I CGCG 2 cut(s) 252, 261
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 353
Bso31I GGTCTC 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 17
BspACI CCGC 1 cut(s) 259
BspCNI CTCAG 2 cut(s) 234, 295
BspFNI CGCG 2 cut(s) 252, 261
BspT104I TTCGAA 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 353
BsrI ACTGG 1 cut(s) 343
Bst4CI ACNGT 3 cut(s) 8, 108, 119
Bst6I CTCTTC 1 cut(s) 141
BstBI TTCGAA 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 4 cut(s) 221, 282, 328, 375
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 2 cut(s) 252, 261
BstMAI GTCTC 1 cut(s) 353
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNSI RCATGY 1 cut(s) 73
BstUI CGCG 2 cut(s) 252, 261
BtsCI GGATG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 2 cut(s) 272, 395
Csp6I GTAC 1 cut(s) 308
CviAII CATG 2 cut(s) 62, 70
CviJI RGCY 5 cut(s) 170, 216, 323, 327, 374
CviKI_1 RGCY 5 cut(s) 170, 216, 323, 327, 374
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 4 cut(s) 221, 282, 328, 375
DrdI GACNNNNNNGTC 1 cut(s) 367
DseDI GACNNNNNNGTC 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 93
FaeI CATG 2 cut(s) 65, 73
FaiI YATR 3 cut(s) 63, 71, 300
FatI CATG 2 cut(s) 61, 69
FokI GGATG 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 360
HapII CCGG 1 cut(s) 150
HgaI GACGC 2 cut(s) 272, 395
Hin1II CATG 2 cut(s) 65, 73
HinfI GANTC 2 cut(s) 127, 191
HpaII CCGG 1 cut(s) 150
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 1 cut(s) 401
Hpy8I GTNNAC 1 cut(s) 246
Hpy99I CGWCG 3 cut(s) 123, 266, 389
HpyAV CCTTC 3 cut(s) 37, 150, 181
HpyCH4III ACNGT 3 cut(s) 8, 108, 119
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 4 cut(s) 221, 282, 328, 375
Hsp92II CATG 2 cut(s) 65, 73
LmnI GCTCC 2 cut(s) 152, 320
LpnPI CCDG 6 cut(s) 157, 163, 254, 309, 324, 366
MboII GAAGA 4 cut(s) 128, 186, 314, 389
MluCI AATT 8 cut(s) 12, 20, 54, 93, 227, 390, 419, 426
MnlI CCTC 4 cut(s) 144, 165, 185, 291
MseI TTAA 1 cut(s) 294
MspI CCGG 1 cut(s) 150
MvnI CGCG 2 cut(s) 252, 261
MwoI GCNNNNNNNGC 1 cut(s) 258
NlaIII CATG 2 cut(s) 65, 73
NspI RCATGY 1 cut(s) 73
NspV TTCGAA 1 cut(s) 17
PfeI GAWTC 2 cut(s) 127, 191
PspPI GGNCC 1 cut(s) 152
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 294
Sau96I GGNCC 1 cut(s) 152
SetI ASST 6 cut(s) 136, 243, 313, 325, 355, 376
SfuI TTCGAA 1 cut(s) 17
SinI GGWCC 1 cut(s) 152
Sse9I AATT 8 cut(s) 12, 20, 54, 93, 227, 390, 419, 426
SsiI CCGC 1 cut(s) 259
TaaI ACNGT 3 cut(s) 8, 108, 119
TaqI TCGA 8 cut(s) 17, 46, 97, 103, 121, 164, 384, 402
TasI AATT 8 cut(s) 12, 20, 54, 93, 227, 390, 419, 426
TfiI GAWTC 2 cut(s) 127, 191
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TspDTI ATGAA 2 cut(s) 32, 315
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 6 cut(s) 12, 20, 54, 93, 419, 426
XceI RCATGY 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.