pycom02g20140

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0029222
Physical Location & Seq
Forward (+)
18299768 .. 18301589
1822 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGGTTGGGCAATCAGGAAAATGGATGATACTTGTGGCGGCGATGTGGATACAGGCGTTCACGGGGACAAACTTTGATTTCGCATCGTATTCTTCTGAACTGAAATCTGTGCTGGGGATTTCTCAGGTGCAGCTCAACTATCTATCGGTGGCCTCGGATATGGGGAAGGCATTGGGTTGGTGTTCTGGGGTTTCTCTCATGTATTTTCCCTTGTGGGTTGTTATGTTCATGGCTGTCTTCATGGGTTTGGTTGGTTATGGCCTCCAATGGTTTGTCATTCGTGGAATCATCTCCGTGCCCTATGTCCTGGTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nodulin-like

Protein Analysis

106

Amino Acids

11.62

Weight (kDa)

7.85

Isoelectric Point (pI)

23.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 7 - 104 4.1e-38 Nodulin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029222)

Species Orthologous Gene IDs
pyrus_communis pycom02g20140
rosa_multiflora Rmu_co8419493.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 38
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AoxI GGCC 2 cut(s) 150, 259
ApeKI GCWGC 1 cut(s) 130
BaeGI GKGCMC 1 cut(s) 300
BaeI ACNNNNGTAYC 2 cut(s) 41, 74
BbsI GAAGAC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 308
BciVI GTATCC 1 cut(s) 42
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 2 cut(s) 39, 131
BlsI GCNGC 2 cut(s) 40, 132
Bme1390I CCNGG 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 149
BshFI GGCC 2 cut(s) 152, 261
BslFI GGGAC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 2 cut(s) 152, 261
Bsp1286I GDGCHC 1 cut(s) 300
BspACI CCGC 1 cut(s) 38
BspANI GGCC 2 cut(s) 152, 261
BspCNI CTCAG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 308
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 30
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 229
BsuI GTATCC 1 cut(s) 42
BsuRI GGCC 2 cut(s) 152, 261
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 30
CviAII CATG 3 cut(s) 199, 229, 241
CviJI RGCY 4 cut(s) 133, 152, 233, 261
CviKI_1 RGCY 4 cut(s) 133, 152, 233, 261
DdeI CTNAG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 202, 232, 244
FaiI YATR 7 cut(s) 161, 200, 224, 230, 242, 258, 303
FaqI GGGAC 1 cut(s) 79
FatI CATG 3 cut(s) 198, 228, 240
Fnu4HI GCNGC 2 cut(s) 39, 131
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 39, 131
GluI GCNGC 2 cut(s) 39, 131
GsaI CCCAGC 1 cut(s) 116
HaeIII GGCC 2 cut(s) 152, 261
Hin1II CATG 3 cut(s) 202, 232, 244
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 1 cut(s) 285
HpaI GTTAAC 1 cut(s) 313
Hpy166II GTNNAC 2 cut(s) 60, 313
Hpy188I TCNGA 2 cut(s) 97, 157
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 2 cut(s) 60, 313
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 3 cut(s) 202, 232, 244
KspAI GTTAAC 1 cut(s) 313
LpnPI CCDG 5 cut(s) 38, 98, 110, 171, 293
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 92
MboII GAAGA 2 cut(s) 84, 229
MhlI GDGCHC 1 cut(s) 300
MnlI CCTC 2 cut(s) 163, 272
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
NlaIII CATG 3 cut(s) 202, 232, 244
PfeI GAWTC 1 cut(s) 285
PkrI GCNGC 2 cut(s) 40, 132
Psp6I CCWGG 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 112
PspGI CCWGG 1 cut(s) 306
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 2 cut(s) 39, 131
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 1 cut(s) 300
SetI ASST 2 cut(s) 129, 135
SfaNI GCATC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 293
SsiI CCGC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 306
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 217, 229
TspGWI ACGGA 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.