Rmu_co8419493.1_g000001

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8419493.1
Physical Location & Seq
Forward (+)
522 .. 893
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8419493.1_g000001.1.cds

Sequence Viewer

Length: 372 bp
atggttggacaatcaaggaaatggatgatactcgtggcaacaacatggattcaggcatttacgggcacgaacttcgacttctcctcctactcctccgaattgaaaacggttcttgggatatctcaggtgcaactcaactacctttctgtggcctcagacatgggcaaggcattggggtggtgttcaggtctgtccctcatgtattttccgttgtgggctgtcatgttcatggctgccttcatgggtttgtttggttatggtctccaatggtttgtcattcaaagaatgatcaccctgccctatgttctggttagttccatcattccttctcttatttcttctcctacattttctgggtttttgcatacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

13.73

Weight (kDa)

8.89

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0029222)

Species Orthologous Gene IDs
pyrus_communis pycom02g20140
rosa_multiflora Rmu_co8419493.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 2 cut(s) 103, 281
Alw26I GTCTC 1 cut(s) 266
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 283
BaeGI GKGCMC 1 cut(s) 68
BauI CACGAG 1 cut(s) 32
BbvI GCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 326
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BclI TGATCA 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 266
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 137, 168
BseRI GAGGAG 2 cut(s) 73, 82
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 152
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 1 cut(s) 152
Bso31I GGTCTC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 288
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 136, 167
BspTNI GGTCTC 1 cut(s) 266
BssMI GATC 1 cut(s) 288
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 109
BstDEI CTNAG 2 cut(s) 123, 154
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 1 cut(s) 291
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 1 cut(s) 288
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 30
CviAII CATG 7 cut(s) 45, 160, 199, 223, 229, 241, 369
CviJI RGCY 3 cut(s) 152, 218, 233
CviKI_1 RGCY 3 cut(s) 152, 218, 233
DdeI CTNAG 2 cut(s) 123, 154
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 266
Eco32I GATATC 1 cut(s) 120
EcoRV GATATC 1 cut(s) 120
FaeI CATG 7 cut(s) 48, 163, 202, 226, 232, 244, 372
FaqI GGGAC 1 cut(s) 178
FatI CATG 7 cut(s) 44, 159, 198, 222, 228, 240, 368
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 1 cut(s) 152
Hin1II CATG 7 cut(s) 48, 163, 202, 226, 232, 244, 372
HinfI GANTC 1 cut(s) 49
HphI GGTGA 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 97, 157
HpyAV CCTTC 2 cut(s) 247, 336
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 2 cut(s) 130, 364
HpyF3I CTNAG 2 cut(s) 123, 154
Hsp92II CATG 7 cut(s) 48, 163, 202, 226, 232, 244, 372
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 1 cut(s) 288
LpnPI CCDG 6 cut(s) 38, 110, 171, 293, 308, 339
Lsp1109I GCAGC 1 cut(s) 220
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 1 cut(s) 330
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 1 cut(s) 98
MnlI CCTC 4 cut(s) 94, 103, 163, 206
MslI CAYNNNNRTG 2 cut(s) 175, 227
NdeII GATC 1 cut(s) 288
NlaIII CATG 7 cut(s) 48, 163, 202, 226, 232, 244, 372
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 235
RseI CAYNNNNRTG 2 cut(s) 175, 227
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 1 cut(s) 288
SduI GDGCHC 1 cut(s) 68
SetI ASST 3 cut(s) 129, 144, 190
SmiMI CAYNNNNRTG 2 cut(s) 175, 227
Sse9I AATT 1 cut(s) 98
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 75
TasI AATT 1 cut(s) 98
TfiI GAWTC 1 cut(s) 49
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 217, 229
TspGWI ACGGA 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.