pycom02g22600

Apoptosis antagonizing transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0029220
Physical Location & Seq
Forward (+)
20713811 .. 20715041
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGGAAGAACTTGAGAAAGAATACATGAATCTTCATCATGAGGAGCAAGATATTTTAAAGAATCTAAAGTGCCATAAGGACGAAGATCTTCTTAAAGGTCAAGCAGTGAAGAACCAAAAGGCTCTCTGGGACAAAGCTTTTGAGTTCAGATTCTTGCTTCAGAAAGCATTCTCAAATTCAAATAGATTACCGCAGGAGCCAGTTAGGTCTTTATTTTGTGATTCACATCAGGTTGTCAGTACAGCATATTCTGATCTAGTTGACTCATCAAAGCGAACTTTAGATTCTCTAGTGGAACTACAAGAGGCTTTACTTGAGAAGAATCCATCCATCGTTCAAGAAACAGATAGTATGTGCAAAGTACATTTATCATACTATTATATTTATTTTGTAATACAATTGGCTCTCTATTATTGTTGTGCATTTGCTATTGGCGTGATAAGAATTGCCAGTATGTGTAAGGTTTGCTATGCTGGTACTGAGTTATTATTAAGAGAGTAA

Protein Analysis

167

Amino Acids

19.32

Weight (kDa)

5.57

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AATF-Che1 PF13339 29 - 115 1.7e-23 Apoptosis antagonizing transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029220)

Species Orthologous Gene IDs
pyrus_communis pycom02g19510 pycom02g22600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 3 cut(s) 241, 363, 478
AgsI TTSAA 2 cut(s) 180, 338
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
ApoI RAATTY 1 cut(s) 175
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
Asp700I GAANNNNTTC 2 cut(s) 87, 167
BccI CCATC 2 cut(s) 334, 338
BfaI CTAG 2 cut(s) 257, 290
BglII AGATCT 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 198
BpuEI CTTGAG 2 cut(s) 32, 335
BsaBI GATNNNNATC 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 200, 450
Bse8I GATNNNNATC 1 cut(s) 225
BseGI GGATG 1 cut(s) 326
BseJI GATNNNNATC 1 cut(s) 225
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 2 cut(s) 200, 450
BseRI GAGGAG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 167
Bsp143I GATC 2 cut(s) 85, 253
BspACI CCGC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 472
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 198
BsrI ACTGG 2 cut(s) 200, 450
BssMI GATC 2 cut(s) 85, 253
BstDEI CTNAG 1 cut(s) 480
BstF5I GGATG 1 cut(s) 326
BstKTI GATC 2 cut(s) 88, 256
BstMBI GATC 2 cut(s) 85, 253
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BtsCI GGATG 1 cut(s) 326
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
CciI TCATGA 1 cut(s) 37
Csp6I GTAC 3 cut(s) 240, 362, 477
CviAII CATG 2 cut(s) 25, 38
CviJI RGCY 5 cut(s) 122, 137, 199, 308, 404
CviKI_1 RGCY 5 cut(s) 122, 137, 199, 308, 404
CviQI GTAC 3 cut(s) 240, 362, 477
DdeI CTNAG 1 cut(s) 480
DpnI GATC 2 cut(s) 87, 255
DpnII GATC 2 cut(s) 85, 253
DraI TTTAAA 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 143
FaeI CATG 2 cut(s) 28, 41
FaiI YATR 9 cut(s) 26, 39, 75, 247, 353, 373, 381, 455, 471
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 1 cut(s) 143
FatI CATG 2 cut(s) 24, 37
FokI GGATG 1 cut(s) 313
FspBI CTAG 2 cut(s) 257, 290
Hin1II CATG 2 cut(s) 28, 41
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 7 cut(s) 28, 61, 150, 221, 263, 284, 322
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 3 cut(s) 149, 162, 253
Hpy188III TCNNGA 2 cut(s) 38, 338
Hpy8I GTNNAC 1 cut(s) 262
HpyCH4V TGCA 2 cut(s) 357, 422
HpyF3I CTNAG 1 cut(s) 480
Hsp92II CATG 2 cut(s) 28, 41
Kzo9I GATC 2 cut(s) 85, 253
LmnI GCTCC 2 cut(s) 43, 196
LpnPI CCDG 6 cut(s) 112, 179, 213, 215, 459, 463
MaeI CTAG 2 cut(s) 257, 290
MalI GATC 2 cut(s) 87, 255
MboI GATC 2 cut(s) 85, 253
MboII GAAGA 6 cut(s) 17, 23, 80, 95, 121, 331
MfeI CAATTG 1 cut(s) 398
MflI RGATCY 1 cut(s) 85
MluCI AATT 3 cut(s) 175, 398, 444
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 2 cut(s) 34, 298
MroXI GAANNNNTTC 2 cut(s) 87, 167
MseI TTAA 3 cut(s) 56, 93, 491
MunI CAATTG 1 cut(s) 398
Mva1269I GAATGC 1 cut(s) 167
NdeII GATC 2 cut(s) 85, 253
NlaIII CATG 2 cut(s) 28, 41
NlaIV GGNNCC 1 cut(s) 198
PagI TCATGA 1 cut(s) 37
PctI GAATGC 1 cut(s) 167
PdmI GAANNNNTTC 2 cut(s) 87, 167
PfeI GAWTC 6 cut(s) 28, 61, 150, 221, 284, 322
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 3 cut(s) 241, 363, 478
RsaNI GTAC 3 cut(s) 240, 362, 477
SaqAI TTAA 3 cut(s) 56, 93, 491
Sau3AI GATC 2 cut(s) 85, 253
SchI GAGTC 1 cut(s) 257
SetI ASST 5 cut(s) 100, 139, 209, 234, 465
SmlI CTYRAG 2 cut(s) 11, 314
SmoI CTYRAG 2 cut(s) 11, 314
Sse9I AATT 3 cut(s) 175, 398, 444
SsiI CCGC 1 cut(s) 191
SspMI CTAG 2 cut(s) 257, 290
TasI AATT 3 cut(s) 175, 398, 444
TatI WGTACW 2 cut(s) 239, 361
TfiI GAWTC 6 cut(s) 28, 61, 150, 221, 284, 322
Tru1I TTAA 3 cut(s) 56, 93, 491
Tru9I TTAA 3 cut(s) 56, 93, 491
TscAI CASTG 1 cut(s) 111
TspDTI ATGAA 2 cut(s) 23, 41
TspRI CASTG 1 cut(s) 111
XapI RAATTY 1 cut(s) 175
XmnI GAANNNNTTC 2 cut(s) 87, 167
XspI CTAG 2 cut(s) 257, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.