Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0029224

Physical Location & Seq

Genomic Coordinates Forward (+)

21976459 .. 21980803

Gene Structure 4345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAGGCCTACAGAATTGAGTGGTTTGTTTCGTGGAGTTGACAATGCGTTTCAAGTGTTTGCTAATCTCGTCATTGACAAATTGGCTACTAAGGAGGATTTAATTCCACCAGTGCCCATTCTTACAAGATACAGGAAGGAAGCTGGAATAAAGGCTTTTGTAAAGAAGGAACTATTTGATCCTAGGCTGCCTGATGAGAGAAGGTCTACTGAAATTAGTTTTAGAACAACTCCAACCCTTTGTGTGCAGTTAAATACACTTTATTATGCAATCAGTCAGTTGAATAAGTTGGAAGATAGCATTTGGGAGCGATGGACGAAGAAGAAGCCCCGCCAAAAACTTATCAAGAAATCCATAGACGAAAAGTCAAAAAGTTTCACCCAAAAGGACACGTTTGATGGCAGTAGAAAAGATATAAATGCCGCTATAGATCGAATATGCGAGTTCACTGGAACTAAAATTATCTTCTGGGATTTGAGGGAACCGTTTATTGACAATTTATATAAACCAAGTGTTTCTCTTTCGAGGTTCGAAGCAGTGTACGAACCACTTGATACGTCAACTATGTGCTATAATTGTGGAACCACTCAGGGATCGATCATTGTGACAAGTCTCCTTCAGGCAACACTGGATGGTTTACTCCGCGTTCTATTAGATGGCGGCCCATCACGAATTTTCTTGGTGGGAGATGCAAAGCTATTAGAAGAAGATTTGGAGGTCCTCAAGGAGTTTTTCATCTCGGGAGGAGATGGCCTTCCACGAGGAGTTGTTGAGAATCAGGTGTCACGTGTTCGGGATGTAGTAAAGTTGCACAGCTATGAGACTCGAGAACTGATCGACGACTTGAGGTCTTCCAGTGGCCCGGAAGCGCGGGGTGGTAGAAGCAAACTAGGGGCTGATTCTAAGACACTATTGAGAATATTATGTCATAGAGGTGATTCGGAGGCCTCTCAATTCCTCAAGAAACAGTACAAGATACCGAAGTCCGCGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009987 GO:0010118 GO:0016020 GO:0030054 GO:0044424 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF810

Protein Analysis

332

Amino Acids

37.48

Weight (kDa)

9.02

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029224)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g23880 pycom07g03360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	206
AccII	CGCG	3 cut(s)	645, 871, 989
AciI	CCGC	7 cut(s)	331, 423, 643, 660, 871, 987, 989
AclWI	GGATC	2 cut(s)	173, 601
AcsI	RAATTY	1 cut(s)	672
AcuI	CTGAAG	1 cut(s)	602
AcvI	CACGTG	1 cut(s)	788
AfaI	GTAC	2 cut(s)	542, 971
AflIII	ACRYGT	2 cut(s)	390, 787
AgsI	TTSAA	2 cut(s)	53, 283
AhdI	GACNNNNNGTC	2 cut(s)	364, 847
AluBI	AGCT	3 cut(s)	143, 697, 816
AluI	AGCT	3 cut(s)	143, 697, 816
Alw26I	GTCTC	2 cut(s)	617, 815
AlwI	GGATC	2 cut(s)	173, 601
Ama87I	CYCGRG	2 cut(s)	739, 825
AoxI	GGCC	5 cut(s)	5, 661, 751, 859, 945
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	672
AspA2I	CCTAGG	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	871
AspS9I	GGNCC	3 cut(s)	662, 718, 860
AsuC2I	CCSGG	1 cut(s)	863
AsuHPI	GGTGA	2 cut(s)	370, 947
AsuII	TTCGAA	1 cut(s)	531
AvaI	CYCGRG	2 cut(s)	739, 825
AvaII	GGWCC	1 cut(s)	718
AvrII	CCTAGG	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	117
BaeI	ACNNNNGTAYC	1 cut(s)	968
BauI	CACGAG	1 cut(s)	759
BbrPI	CACGTG	1 cut(s)	788
BbsI	GAAGAC	1 cut(s)	843
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	6 cut(s)	306, 392, 626, 650, 673, 743
BcnI	CCSGG	1 cut(s)	863
BcoDI	GTCTC	2 cut(s)	617, 815
BfaI	CTAG	2 cut(s)	183, 890
BfmI	CTRYAG	2 cut(s)	9, 426
BisI	GCNGC	4 cut(s)	188, 423, 661, 990
BlnI	CCTAGG	1 cut(s)	182
BlsI	GCNGC	4 cut(s)	189, 424, 662, 991
Bme1390I	CCNGG	1 cut(s)	863
Bme18I	GGWCC	1 cut(s)	718
BmeRI	GACNNNNNGTC	2 cut(s)	364, 847
BmeT110I	CYCGRG	2 cut(s)	739, 825
BmgT120I	GGNCC	3 cut(s)	662, 718, 860
BmiI	GGNNCC	2 cut(s)	483, 583
BmrFI	CCNGG	1 cut(s)	863
BmsI	GCATC	1 cut(s)	679
BpiI	GAAGAC	1 cut(s)	843
Bpu14I	TTCGAA	1 cut(s)	531
BpuEI	CTTGAG	3 cut(s)	707, 865, 944
BpuMI	CCSGG	1 cut(s)	863
Bsa29I	ATCGAT	1 cut(s)	596
BsaAI	YACGTR	1 cut(s)	788
BsaJI	CCNNGG	2 cut(s)	182, 987
Bse1I	ACTGG	4 cut(s)	110, 454, 633, 855
BseCI	ATCGAT	1 cut(s)	596
BseDI	CCNNGG	2 cut(s)	182, 987
BseGI	GGATG	2 cut(s)	637, 802
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	4 cut(s)	110, 454, 633, 855
BseRI	GAGGAG	2 cut(s)	759, 777
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	3 cut(s)	645, 871, 989
BshFI	GGCC	5 cut(s)	7, 663, 753, 861, 947
BshVI	ATCGAT	1 cut(s)	596
BsiHKCI	CYCGRG	2 cut(s)	739, 825
BsiSI	CCGG	1 cut(s)	863
BsmAI	GTCTC	2 cut(s)	617, 815
BsnI	GGCC	5 cut(s)	7, 663, 753, 861, 947
BsoBI	CYCGRG	2 cut(s)	739, 825
Bsp119I	TTCGAA	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	5 cut(s)	178, 430, 593, 597, 834
BspACI	CCGC	7 cut(s)	331, 423, 643, 660, 871, 987, 989
BspANI	GGCC	5 cut(s)	7, 663, 753, 861, 947
BspCNI	CTCAG	1 cut(s)	601
BspDI	ATCGAT	1 cut(s)	596
BspFNI	CGCG	3 cut(s)	645, 871, 989
BspLI	GGNNCC	2 cut(s)	483, 583
BspPI	GGATC	2 cut(s)	173, 601
BspT104I	TTCGAA	1 cut(s)	531
BsrI	ACTGG	4 cut(s)	110, 454, 633, 855
BssECI	CCNNGG	2 cut(s)	182, 987
BssMI	GATC	5 cut(s)	178, 430, 593, 597, 834
BssSI	CACGAG	1 cut(s)	759
BssT1I	CCWWGG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	759
Bst4CI	ACNGT	2 cut(s)	486, 969
BstBAI	YACGTR	1 cut(s)	788
BstBI	TTCGAA	1 cut(s)	531
BstDEI	CTNAG	3 cut(s)	90, 588, 903
BstDSI	CCRYGG	1 cut(s)	987
BstF5I	GGATG	2 cut(s)	637, 802
BstFNI	CGCG	3 cut(s)	645, 871, 989
BstHHI	GCGC	1 cut(s)	871
BstKTI	GATC	5 cut(s)	181, 433, 596, 600, 837
BstMAI	GTCTC	2 cut(s)	617, 815
BstMBI	GATC	5 cut(s)	178, 430, 593, 597, 834
BstSCI	CCNGG	1 cut(s)	861
BstSFI	CTRYAG	2 cut(s)	9, 426
BstSLI	GKGCMC	1 cut(s)	117
BstUI	CGCG	3 cut(s)	645, 871, 989
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	843
Bsu15I	ATCGAT	1 cut(s)	596
BsuRI	GGCC	5 cut(s)	7, 663, 753, 861, 947
BsuTUI	ATCGAT	1 cut(s)	596
BtgI	CCRYGG	1 cut(s)	987
BtgZI	GCGATG	1 cut(s)	325
BtsCI	GGATG	2 cut(s)	637, 802
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	5 cut(s)	117, 447, 543, 626, 862
CfoI	GCGC	1 cut(s)	871
Cfr13I	GGNCC	3 cut(s)	662, 718, 860
Cfr42I	CCGCGG	1 cut(s)	990
ClaI	ATCGAT	1 cut(s)	596
Csp6I	GTAC	2 cut(s)	541, 970
CviQI	GTAC	2 cut(s)	541, 970
DdeI	CTNAG	3 cut(s)	90, 588, 903
DpnI	GATC	5 cut(s)	180, 432, 595, 599, 836
DpnII	GATC	5 cut(s)	178, 430, 593, 597, 834
DriI	GACNNNNNGTC	2 cut(s)	364, 847
Eam1105I	GACNNNNNGTC	2 cut(s)	364, 847
Eco130I	CCWWGG	1 cut(s)	182
Eco147I	AGGCCT	2 cut(s)	7, 947
Eco47I	GGWCC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	602
Eco72I	CACGTG	1 cut(s)	788
Eco88I	CYCGRG	2 cut(s)	739, 825
EcoO109I	RGGNCCY	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	182
FauI	CCCGC	2 cut(s)	338, 864
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	4 cut(s)	188, 423, 661, 990
FokI	GGATG	2 cut(s)	644, 809
Fsp4HI	GCNGC	4 cut(s)	188, 423, 661, 990
FspBI	CTAG	2 cut(s)	183, 890
GlaI	GCGC	1 cut(s)	870
GluI	GCNGC	4 cut(s)	188, 423, 661, 990
HaeIII	GGCC	5 cut(s)	7, 663, 753, 861, 947
HapII	CCGG	1 cut(s)	863
HhaI	GCGC	1 cut(s)	871
Hin6I	GCGC	1 cut(s)	869
HinP1I	GCGC	1 cut(s)	869
HincII	GTYRAC	2 cut(s)	40, 561
HindII	GTYRAC	2 cut(s)	40, 561
HinfI	GANTC	4 cut(s)	775, 823, 899, 938
HpaII	CCGG	1 cut(s)	863
HphI	GGTGA	2 cut(s)	370, 947
Hpy166II	GTNNAC	6 cut(s)	40, 207, 447, 541, 561, 638
Hpy188I	TCNGA	1 cut(s)	943
Hpy188III	TCNNGA	6 cut(s)	346, 669, 741, 794, 827, 961
Hpy8I	GTNNAC	6 cut(s)	40, 207, 447, 541, 561, 638
Hpy99I	CGWCG	1 cut(s)	842
HpyAV	CCTTC	5 cut(s)	130, 160, 195, 626, 764
HpyCH4III	ACNGT	2 cut(s)	486, 969
HpyCH4IV	ACGT	3 cut(s)	392, 557, 787
HpyCH4V	TGCA	4 cut(s)	247, 269, 692, 811
HpyF3I	CTNAG	3 cut(s)	90, 588, 903
HpySE526I	ACGT	3 cut(s)	392, 557, 787
HspAI	GCGC	1 cut(s)	869
KspI	CCGCGG	1 cut(s)	990
Kzo9I	GATC	5 cut(s)	178, 430, 593, 597, 834
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	2 cut(s)	183, 890
MaeII	ACGT	3 cut(s)	392, 557, 787
MaeIII	GTNAC	2 cut(s)	604, 783
MalI	GATC	5 cut(s)	180, 432, 595, 599, 836
MboI	GATC	5 cut(s)	178, 430, 593, 597, 834
MboII	GAAGA	7 cut(s)	305, 331, 334, 457, 716, 719, 843
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	9 cut(s)	14, 80, 102, 213, 459, 496, 574, 672, 953
MlyI	GAGTC	1 cut(s)	817
MmeI	TCCRAC	2 cut(s)	257, 270
MseI	TTAA	2 cut(s)	101, 251
MslI	CAYNNNNRTG	2 cut(s)	816, 933
MspA1I	CMGCKG	1 cut(s)	989
MspI	CCGG	1 cut(s)	863
MspR9I	CCNGG	1 cut(s)	863
MvnI	CGCG	3 cut(s)	645, 871, 989
NciI	CCSGG	1 cut(s)	863
NdeII	GATC	5 cut(s)	178, 430, 593, 597, 834
NlaIV	GGNNCC	2 cut(s)	483, 583
NmuCI	GTSAC	2 cut(s)	604, 783
NspV	TTCGAA	1 cut(s)	531
PaeR7I	CTCGAG	1 cut(s)	825
PceI	AGGCCT	2 cut(s)	7, 947
PfeI	GAWTC	3 cut(s)	775, 899, 938
PkrI	GCNGC	4 cut(s)	189, 424, 662, 991
PleI	GAGTC	1 cut(s)	817
PmaCI	CACGTG	1 cut(s)	788
PmlI	CACGTG	1 cut(s)	788
PpsI	GAGTC	1 cut(s)	817
Ppu21I	YACGTR	1 cut(s)	788
PpuMI	RGGWCCY	1 cut(s)	718
Psp5II	RGGWCCY	1 cut(s)	718
PspCI	CACGTG	1 cut(s)	788
PspN4I	GGNNCC	2 cut(s)	483, 583
PspPI	GGNCC	3 cut(s)	662, 718, 860
PspPPI	RGGWCCY	1 cut(s)	718
RsaI	GTAC	2 cut(s)	542, 971
RsaNI	GTAC	2 cut(s)	541, 970
RseI	CAYNNNNRTG	2 cut(s)	816, 933
SacII	CCGCGG	1 cut(s)	990
SaqAI	TTAA	2 cut(s)	101, 251
SatI	GCNGC	4 cut(s)	188, 423, 661, 990
Sau3AI	GATC	5 cut(s)	178, 430, 593, 597, 834
Sau96I	GGNCC	3 cut(s)	662, 718, 860
SchI	GAGTC	1 cut(s)	817
ScrFI	CCNGG	1 cut(s)	863
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	1 cut(s)	679
SfcI	CTRYAG	2 cut(s)	9, 426
Sfr274I	CTCGAG	1 cut(s)	825
Sfr303I	CCGCGG	1 cut(s)	990
SfuI	TTCGAA	1 cut(s)	531
SgrBI	CCGCGG	1 cut(s)	990
SinI	GGWCC	1 cut(s)	718
SlaI	CTCGAG	1 cut(s)	825
SmiMI	CAYNNNNRTG	2 cut(s)	816, 933
SmlI	CTYRAG	4 cut(s)	722, 825, 844, 959
SmoI	CTYRAG	4 cut(s)	722, 825, 844, 959
Sse9I	AATT	9 cut(s)	14, 80, 102, 213, 459, 496, 574, 672, 953
SseBI	AGGCCT	2 cut(s)	7, 947
SsiI	CCGC	7 cut(s)	331, 423, 643, 660, 871, 987, 989
SspI	AATATT	1 cut(s)	921
SspMI	CTAG	2 cut(s)	183, 890
StuI	AGGCCT	2 cut(s)	7, 947
StyD4I	CCNGG	1 cut(s)	861
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	486, 969
TaiI	ACGT	3 cut(s)	395, 560, 790
TaqI	TCGA	6 cut(s)	433, 524, 531, 596, 826, 837
TasI	AATT	9 cut(s)	14, 80, 102, 213, 459, 496, 574, 672, 953
TatI	WGTACW	1 cut(s)	969
TauI	GCSGC	3 cut(s)	425, 663, 992
TfiI	GAWTC	3 cut(s)	775, 899, 938
Tru1I	TTAA	2 cut(s)	101, 251
Tru9I	TTAA	2 cut(s)	101, 251
TscAI	CASTG	5 cut(s)	117, 454, 543, 633, 862
TseFI	GTSAC	2 cut(s)	604, 783
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	2 cut(s)	604, 783
TspDTI	ATGAA	1 cut(s)	724
TspRI	CASTG	5 cut(s)	117, 454, 543, 633, 862
VpaK11BI	GGWCC	1 cut(s)	718
XapI	RAATTY	1 cut(s)	672
XhoI	CTCGAG	1 cut(s)	825
XmaJI	CCTAGG	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	2 cut(s)	183, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.