pycom02g23880

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0029224
Physical Location & Seq
Forward (+)
21976459 .. 21980803
4345 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 996 bp
ATGAGGCCTACAGAATTGAGTGGTTTGTTTCGTGGAGTTGACAATGCGTTTCAAGTGTTTGCTAATCTCGTCATTGACAAATTGGCTACTAAGGAGGATTTAATTCCACCAGTGCCCATTCTTACAAGATACAGGAAGGAAGCTGGAATAAAGGCTTTTGTAAAGAAGGAACTATTTGATCCTAGGCTGCCTGATGAGAGAAGGTCTACTGAAATTAGTTTTAGAACAACTCCAACCCTTTGTGTGCAGTTAAATACACTTTATTATGCAATCAGTCAGTTGAATAAGTTGGAAGATAGCATTTGGGAGCGATGGACGAAGAAGAAGCCCCGCCAAAAACTTATCAAGAAATCCATAGACGAAAAGTCAAAAAGTTTCACCCAAAAGGACACGTTTGATGGCAGTAGAAAAGATATAAATGCCGCTATAGATCGAATATGCGAGTTCACTGGAACTAAAATTATCTTCTGGGATTTGAGGGAACCGTTTATTGACAATTTATATAAACCAAGTGTTTCTCTTTCGAGGTTCGAAGCAGTGTACGAACCACTTGATACGTCAACTATGTGCTATAATTGTGGAACCACTCAGGGATCGATCATTGTGACAAGTCTCCTTCAGGCAACACTGGATGGTTTACTCCGCGTTCTATTAGATGGCGGCCCATCACGAATTTTCTTGGTGGGAGATGCAAAGCTATTAGAAGAAGATTTGGAGGTCCTCAAGGAGTTTTTCATCTCGGGAGGAGATGGCCTTCCACGAGGAGTTGTTGAGAATCAGGTGTCACGTGTTCGGGATGTAGTAAAGTTGCACAGCTATGAGACTCGAGAACTGATCGACGACTTGAGGTCTTCCAGTGGCCCGGAAGCGCGGGGTGGTAGAAGCAAACTAGGGGCTGATTCTAAGACACTATTGAGAATATTATGTCATAGAGGTGATTCGGAGGCCTCTCAATTCCTCAAGAAACAGTACAAGATACCGAAGTCCGCGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009987 GO:0010118 GO:0016020 GO:0030054 GO:0044424 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

332

Amino Acids

37.48

Weight (kDa)

9.02

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 1 - 329 3.2e-91 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029224)

Species Orthologous Gene IDs
pyrus_communis pycom02g23880 pycom07g03360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 206
AccII CGCG 3 cut(s) 645, 871, 989
AciI CCGC 7 cut(s) 331, 423, 643, 660, 871, 987, 989
AclWI GGATC 2 cut(s) 173, 601
AcsI RAATTY 1 cut(s) 672
AcuI CTGAAG 1 cut(s) 602
AcvI CACGTG 1 cut(s) 788
AfaI GTAC 2 cut(s) 542, 971
AflIII ACRYGT 2 cut(s) 390, 787
AgsI TTSAA 2 cut(s) 53, 283
AhdI GACNNNNNGTC 2 cut(s) 364, 847
AluBI AGCT 3 cut(s) 143, 697, 816
AluI AGCT 3 cut(s) 143, 697, 816
Alw26I GTCTC 2 cut(s) 617, 815
AlwI GGATC 2 cut(s) 173, 601
Ama87I CYCGRG 2 cut(s) 739, 825
AoxI GGCC 5 cut(s) 5, 661, 751, 859, 945
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 672
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 1 cut(s) 871
AspS9I GGNCC 3 cut(s) 662, 718, 860
AsuC2I CCSGG 1 cut(s) 863
AsuHPI GGTGA 2 cut(s) 370, 947
AsuII TTCGAA 1 cut(s) 531
AvaI CYCGRG 2 cut(s) 739, 825
AvaII GGWCC 1 cut(s) 718
AvrII CCTAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 117
BaeI ACNNNNGTAYC 1 cut(s) 968
BauI CACGAG 1 cut(s) 759
BbrPI CACGTG 1 cut(s) 788
BbsI GAAGAC 1 cut(s) 843
BbvI GCAGC 1 cut(s) 174
BccI CCATC 6 cut(s) 306, 392, 626, 650, 673, 743
BcnI CCSGG 1 cut(s) 863
BcoDI GTCTC 2 cut(s) 617, 815
BfaI CTAG 2 cut(s) 183, 890
BfmI CTRYAG 2 cut(s) 9, 426
BisI GCNGC 4 cut(s) 188, 423, 661, 990
BlnI CCTAGG 1 cut(s) 182
BlsI GCNGC 4 cut(s) 189, 424, 662, 991
Bme1390I CCNGG 1 cut(s) 863
Bme18I GGWCC 1 cut(s) 718
BmeRI GACNNNNNGTC 2 cut(s) 364, 847
BmeT110I CYCGRG 2 cut(s) 739, 825
BmgT120I GGNCC 3 cut(s) 662, 718, 860
BmiI GGNNCC 2 cut(s) 483, 583
BmrFI CCNGG 1 cut(s) 863
BmsI GCATC 1 cut(s) 679
BpiI GAAGAC 1 cut(s) 843
Bpu14I TTCGAA 1 cut(s) 531
BpuEI CTTGAG 3 cut(s) 707, 865, 944
BpuMI CCSGG 1 cut(s) 863
Bsa29I ATCGAT 1 cut(s) 596
BsaAI YACGTR 1 cut(s) 788
BsaJI CCNNGG 2 cut(s) 182, 987
Bse1I ACTGG 4 cut(s) 110, 454, 633, 855
BseCI ATCGAT 1 cut(s) 596
BseDI CCNNGG 2 cut(s) 182, 987
BseGI GGATG 2 cut(s) 637, 802
BseMII CTCAG 1 cut(s) 602
BseNI ACTGG 4 cut(s) 110, 454, 633, 855
BseRI GAGGAG 2 cut(s) 759, 777
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 266
Bsh1236I CGCG 3 cut(s) 645, 871, 989
BshFI GGCC 5 cut(s) 7, 663, 753, 861, 947
BshVI ATCGAT 1 cut(s) 596
BsiHKCI CYCGRG 2 cut(s) 739, 825
BsiSI CCGG 1 cut(s) 863
BsmAI GTCTC 2 cut(s) 617, 815
BsnI GGCC 5 cut(s) 7, 663, 753, 861, 947
BsoBI CYCGRG 2 cut(s) 739, 825
Bsp119I TTCGAA 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 5 cut(s) 178, 430, 593, 597, 834
BspACI CCGC 7 cut(s) 331, 423, 643, 660, 871, 987, 989
BspANI GGCC 5 cut(s) 7, 663, 753, 861, 947
BspCNI CTCAG 1 cut(s) 601
BspDI ATCGAT 1 cut(s) 596
BspFNI CGCG 3 cut(s) 645, 871, 989
BspLI GGNNCC 2 cut(s) 483, 583
BspPI GGATC 2 cut(s) 173, 601
BspT104I TTCGAA 1 cut(s) 531
BsrI ACTGG 4 cut(s) 110, 454, 633, 855
BssECI CCNNGG 2 cut(s) 182, 987
BssMI GATC 5 cut(s) 178, 430, 593, 597, 834
BssSI CACGAG 1 cut(s) 759
BssT1I CCWWGG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 759
Bst4CI ACNGT 2 cut(s) 486, 969
BstBAI YACGTR 1 cut(s) 788
BstBI TTCGAA 1 cut(s) 531
BstDEI CTNAG 3 cut(s) 90, 588, 903
BstDSI CCRYGG 1 cut(s) 987
BstF5I GGATG 2 cut(s) 637, 802
BstFNI CGCG 3 cut(s) 645, 871, 989
BstHHI GCGC 1 cut(s) 871
BstKTI GATC 5 cut(s) 181, 433, 596, 600, 837
BstMAI GTCTC 2 cut(s) 617, 815
BstMBI GATC 5 cut(s) 178, 430, 593, 597, 834
BstSCI CCNGG 1 cut(s) 861
BstSFI CTRYAG 2 cut(s) 9, 426
BstSLI GKGCMC 1 cut(s) 117
BstUI CGCG 3 cut(s) 645, 871, 989
BstV1I GCAGC 1 cut(s) 174
BstV2I GAAGAC 1 cut(s) 843
Bsu15I ATCGAT 1 cut(s) 596
BsuRI GGCC 5 cut(s) 7, 663, 753, 861, 947
BsuTUI ATCGAT 1 cut(s) 596
BtgI CCRYGG 1 cut(s) 987
BtgZI GCGATG 1 cut(s) 325
BtsCI GGATG 2 cut(s) 637, 802
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 5 cut(s) 117, 447, 543, 626, 862
CfoI GCGC 1 cut(s) 871
Cfr13I GGNCC 3 cut(s) 662, 718, 860
Cfr42I CCGCGG 1 cut(s) 990
ClaI ATCGAT 1 cut(s) 596
Csp6I GTAC 2 cut(s) 541, 970
CviQI GTAC 2 cut(s) 541, 970
DdeI CTNAG 3 cut(s) 90, 588, 903
DpnI GATC 5 cut(s) 180, 432, 595, 599, 836
DpnII GATC 5 cut(s) 178, 430, 593, 597, 834
DriI GACNNNNNGTC 2 cut(s) 364, 847
Eam1105I GACNNNNNGTC 2 cut(s) 364, 847
Eco130I CCWWGG 1 cut(s) 182
Eco147I AGGCCT 2 cut(s) 7, 947
Eco47I GGWCC 1 cut(s) 718
Eco57I CTGAAG 1 cut(s) 602
Eco72I CACGTG 1 cut(s) 788
Eco88I CYCGRG 2 cut(s) 739, 825
EcoO109I RGGNCCY 1 cut(s) 718
EcoT14I CCWWGG 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 182
FauI CCCGC 2 cut(s) 338, 864
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 4 cut(s) 188, 423, 661, 990
FokI GGATG 2 cut(s) 644, 809
Fsp4HI GCNGC 4 cut(s) 188, 423, 661, 990
FspBI CTAG 2 cut(s) 183, 890
GlaI GCGC 1 cut(s) 870
GluI GCNGC 4 cut(s) 188, 423, 661, 990
HaeIII GGCC 5 cut(s) 7, 663, 753, 861, 947
HapII CCGG 1 cut(s) 863
HhaI GCGC 1 cut(s) 871
Hin6I GCGC 1 cut(s) 869
HinP1I GCGC 1 cut(s) 869
HincII GTYRAC 2 cut(s) 40, 561
HindII GTYRAC 2 cut(s) 40, 561
HinfI GANTC 4 cut(s) 775, 823, 899, 938
HpaII CCGG 1 cut(s) 863
HphI GGTGA 2 cut(s) 370, 947
Hpy166II GTNNAC 6 cut(s) 40, 207, 447, 541, 561, 638
Hpy188I TCNGA 1 cut(s) 943
Hpy188III TCNNGA 6 cut(s) 346, 669, 741, 794, 827, 961
Hpy8I GTNNAC 6 cut(s) 40, 207, 447, 541, 561, 638
Hpy99I CGWCG 1 cut(s) 842
HpyAV CCTTC 5 cut(s) 130, 160, 195, 626, 764
HpyCH4III ACNGT 2 cut(s) 486, 969
HpyCH4IV ACGT 3 cut(s) 392, 557, 787
HpyCH4V TGCA 4 cut(s) 247, 269, 692, 811
HpyF3I CTNAG 3 cut(s) 90, 588, 903
HpySE526I ACGT 3 cut(s) 392, 557, 787
HspAI GCGC 1 cut(s) 869
KspI CCGCGG 1 cut(s) 990
Kzo9I GATC 5 cut(s) 178, 430, 593, 597, 834
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 1 cut(s) 679
MaeI CTAG 2 cut(s) 183, 890
MaeII ACGT 3 cut(s) 392, 557, 787
MaeIII GTNAC 2 cut(s) 604, 783
MalI GATC 5 cut(s) 180, 432, 595, 599, 836
MboI GATC 5 cut(s) 178, 430, 593, 597, 834
MboII GAAGA 7 cut(s) 305, 331, 334, 457, 716, 719, 843
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 9 cut(s) 14, 80, 102, 213, 459, 496, 574, 672, 953
MlyI GAGTC 1 cut(s) 817
MmeI TCCRAC 2 cut(s) 257, 270
MseI TTAA 2 cut(s) 101, 251
MslI CAYNNNNRTG 2 cut(s) 816, 933
MspA1I CMGCKG 1 cut(s) 989
MspI CCGG 1 cut(s) 863
MspR9I CCNGG 1 cut(s) 863
MvnI CGCG 3 cut(s) 645, 871, 989
NciI CCSGG 1 cut(s) 863
NdeII GATC 5 cut(s) 178, 430, 593, 597, 834
NlaIV GGNNCC 2 cut(s) 483, 583
NmuCI GTSAC 2 cut(s) 604, 783
NspV TTCGAA 1 cut(s) 531
PaeR7I CTCGAG 1 cut(s) 825
PceI AGGCCT 2 cut(s) 7, 947
PfeI GAWTC 3 cut(s) 775, 899, 938
PkrI GCNGC 4 cut(s) 189, 424, 662, 991
PleI GAGTC 1 cut(s) 817
PmaCI CACGTG 1 cut(s) 788
PmlI CACGTG 1 cut(s) 788
PpsI GAGTC 1 cut(s) 817
Ppu21I YACGTR 1 cut(s) 788
PpuMI RGGWCCY 1 cut(s) 718
Psp5II RGGWCCY 1 cut(s) 718
PspCI CACGTG 1 cut(s) 788
PspN4I GGNNCC 2 cut(s) 483, 583
PspPI GGNCC 3 cut(s) 662, 718, 860
PspPPI RGGWCCY 1 cut(s) 718
RsaI GTAC 2 cut(s) 542, 971
RsaNI GTAC 2 cut(s) 541, 970
RseI CAYNNNNRTG 2 cut(s) 816, 933
SacII CCGCGG 1 cut(s) 990
SaqAI TTAA 2 cut(s) 101, 251
SatI GCNGC 4 cut(s) 188, 423, 661, 990
Sau3AI GATC 5 cut(s) 178, 430, 593, 597, 834
Sau96I GGNCC 3 cut(s) 662, 718, 860
SchI GAGTC 1 cut(s) 817
ScrFI CCNGG 1 cut(s) 863
SduI GDGCHC 1 cut(s) 117
SfaNI GCATC 1 cut(s) 679
SfcI CTRYAG 2 cut(s) 9, 426
Sfr274I CTCGAG 1 cut(s) 825
Sfr303I CCGCGG 1 cut(s) 990
SfuI TTCGAA 1 cut(s) 531
SgrBI CCGCGG 1 cut(s) 990
SinI GGWCC 1 cut(s) 718
SlaI CTCGAG 1 cut(s) 825
SmiMI CAYNNNNRTG 2 cut(s) 816, 933
SmlI CTYRAG 4 cut(s) 722, 825, 844, 959
SmoI CTYRAG 4 cut(s) 722, 825, 844, 959
Sse9I AATT 9 cut(s) 14, 80, 102, 213, 459, 496, 574, 672, 953
SseBI AGGCCT 2 cut(s) 7, 947
SsiI CCGC 7 cut(s) 331, 423, 643, 660, 871, 987, 989
SspI AATATT 1 cut(s) 921
SspMI CTAG 2 cut(s) 183, 890
StuI AGGCCT 2 cut(s) 7, 947
StyD4I CCNGG 1 cut(s) 861
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 2 cut(s) 486, 969
TaiI ACGT 3 cut(s) 395, 560, 790
TaqI TCGA 6 cut(s) 433, 524, 531, 596, 826, 837
TasI AATT 9 cut(s) 14, 80, 102, 213, 459, 496, 574, 672, 953
TatI WGTACW 1 cut(s) 969
TauI GCSGC 3 cut(s) 425, 663, 992
TfiI GAWTC 3 cut(s) 775, 899, 938
Tru1I TTAA 2 cut(s) 101, 251
Tru9I TTAA 2 cut(s) 101, 251
TscAI CASTG 5 cut(s) 117, 454, 543, 633, 862
TseFI GTSAC 2 cut(s) 604, 783
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 2 cut(s) 604, 783
TspDTI ATGAA 1 cut(s) 724
TspRI CASTG 5 cut(s) 117, 454, 543, 633, 862
VpaK11BI GGWCC 1 cut(s) 718
XapI RAATTY 1 cut(s) 672
XhoI CTCGAG 1 cut(s) 825
XmaJI CCTAGG 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 206
XspI CTAG 2 cut(s) 183, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.