pycom02g26330
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
24144025 .. 24144499
475 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGGAAGGTTTTGATGTATGGGTAGGGAATGTGTGTGGAACACGTTGGAGTCATGGACACACATCTTTTATCAGAAGAGAATCAGTGGCTCTATTTGATCTATCAGAAAAGATGCGCTGCATATATTTGACAACAAGCTCCAAAGTCTTTGTTGTTGGACATTCACAGGGAACGATAATGTCTTTAGCTGCTCTCACCCAGCCGGATATAGCAGAACTGGTTGAAGCTGCCGCTCTTTTCTCTCCAATTTCATACTCGGAACATATCACTTCTAAATTTGCACCTAGAATGGTCAACATATATATATTGATCAGGTATTCCTTATCTTCTTCAAAGTATAGCGTGTGA

Protein Analysis

116

Amino Acids

12.84

Weight (kDa)

7.83

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028882)

Species Orthologous Gene IDs
malus_domestica MD07G1023500.v1.1
pyrus_communis pycom02g26330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 233
AciI CCGC 1 cut(s) 231
AcsI RAATTY 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 2 cut(s) 224, 333
AluBI AGCT 3 cut(s) 138, 188, 227
AluI AGCT 3 cut(s) 138, 188, 227
ApeKI GCWGC 3 cut(s) 117, 188, 227
ApoI RAATTY 1 cut(s) 275
AspLEI GCGC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 187
BbvI GCAGC 3 cut(s) 104, 175, 214
BclI TGATCA 1 cut(s) 309
BfaI CTAG 1 cut(s) 285
BisI GCNGC 4 cut(s) 118, 189, 228, 231
BlsI GCNGC 4 cut(s) 119, 190, 229, 232
BmsI GCATC 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 222
BseXI GCAGC 3 cut(s) 104, 175, 214
BseYI CCCAGC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 203
Bsp143I GATC 2 cut(s) 97, 309
BspACI CCGC 1 cut(s) 231
BsrBI CCGCTC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 222
BssMI GATC 2 cut(s) 97, 309
Bst6I CTCTTC 1 cut(s) 70
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 2 cut(s) 100, 312
BstMBI GATC 2 cut(s) 97, 309
BstV1I GCAGC 3 cut(s) 104, 175, 214
BtsIMutI CAGTG 1 cut(s) 90
CfoI GCGC 1 cut(s) 117
CviAII CATG 1 cut(s) 53
CviJI RGCY 5 cut(s) 89, 138, 188, 202, 227
CviKI_1 RGCY 5 cut(s) 89, 138, 188, 202, 227
DpnI GATC 2 cut(s) 99, 311
DpnII GATC 2 cut(s) 97, 309
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
FaeI CATG 1 cut(s) 56
FatI CATG 1 cut(s) 52
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 4 cut(s) 118, 189, 228, 231
Fsp4HI GCNGC 4 cut(s) 118, 189, 228, 231
FspBI CTAG 1 cut(s) 285
GlaI GCGC 1 cut(s) 116
GluI GCNGC 4 cut(s) 118, 189, 228, 231
GsaI CCCAGC 1 cut(s) 202
HapII CCGG 1 cut(s) 203
HhaI GCGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 2 cut(s) 49, 80
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 3 cut(s) 74, 106, 259
Hpy8I GTNNAC 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 120, 281
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 2 cut(s) 97, 309
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 5 cut(s) 152, 203, 212, 216, 298
Lsp1109I GCAGC 3 cut(s) 104, 175, 214
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 43
MalI GATC 2 cut(s) 99, 311
MbiI CCGCTC 1 cut(s) 233
MboI GATC 2 cut(s) 97, 309
MboII GAAGA 3 cut(s) 87, 318, 321
MluCI AATT 2 cut(s) 246, 275
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 2 cut(s) 26, 136
MspI CCGG 1 cut(s) 203
NdeII GATC 2 cut(s) 97, 309
NlaIII CATG 1 cut(s) 56
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 4 cut(s) 119, 190, 229, 232
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 198
SatI GCNGC 4 cut(s) 118, 189, 228, 231
Sau3AI GATC 2 cut(s) 97, 309
SchI GAGTC 1 cut(s) 58
SetI ASST 7 cut(s) 10, 46, 140, 190, 229, 286, 317
SfaNI GCATC 1 cut(s) 102
Sse9I AATT 2 cut(s) 246, 275
SsiI CCGC 1 cut(s) 231
SspMI CTAG 1 cut(s) 285
TaiI ACGT 1 cut(s) 46
TasI AATT 2 cut(s) 246, 275
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 1 cut(s) 80
TscAI CASTG 1 cut(s) 90
TseI GCWGC 3 cut(s) 117, 188, 227
TspDTI ATGAA 1 cut(s) 240
TspRI CASTG 1 cut(s) 90
XapI RAATTY 1 cut(s) 275
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.