pycom02g26840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0028952
Physical Location & Seq
Reverse (-)
24655921 .. 24657683
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1020 bp
ATGCATTATGGAACCTACTATTGCTTCTGCTTTCCCTTGGAGGTAACGTTTTGGGCAGCTCGACATATTTTAGAAGTGATGAGCAAAGTTGTCCACAAGCCCATAGCCCTTAACTTCGAGTGTACTCCAACCTTTGCCACTTGGTGGGAGGCCCATGATCGTCTCTTTGAGCAGCTAATCTTCAAATCTTATCCGAAGAAAGAAGAGCTTGAAAACTGGAAGAAGGTGATCCACCAGAAGAACCAGCTTCTTCTTATGGCCCAAGGCAACAATGAGGAAGTGGACGTCAGGCCACCAGAAGAAGCTGCAAACACACTTGTCCTTCAAGCCGCTGCTGAGGCTGCAAGGCAAAGGCTGGGTCCAACTGAAAGCATGAAAGTCACCTACCCTGGTCTCAGTCTCAGTCTGAGTTTGAGAGGACAAAGGTGGCCAAGCAGAAAATTCAACAAGAGAAACAAAACAATGGGAAAGGGAAGTGAGTGCAGTATCAACAAACGCTGTTATGATATTACAATGTCAAGGCGGACTAGAAAGTCATCATTTAACTGTAACGTCCAAGAAGGAATTAGCGTCCCTCCTCCCGCTCCCGCTCTTGCTCTTAAGAGTTTTCTGGATGAAAATGGAGATGGAGGAGATCAGAGTTCGCCTTCACCTTCGCCTTCACCCTCGCCCTCGAAAGTTGAAAATGAAGATCATCCAGAGAATGGTTATGACCGTAAAATATTGAAGCAATTGATCAATGGGGATGAAGGAGCAAAGGCGGTCATCAAATCAGGTAACGAAGGGAGCACTGGAAGAAGTTCACTTGGCCAACACTTCACTGAAGAAGAAAAAGGGAAGCACCTTCAACTGGTCAAGAAGCAGCAAAAGGCAGAAGAGAGTTTGCAAGGAGGAATGAAGCTCAAGAAACTGGTGAGTCGTTGTGCCAAAGTTTTTGGCCATTTGGTCACAGTCAGGAGCGACCGAACACTTCGAGAACCCAGGAAGCTTGAGGCCGCGGTTCCTCGGTTAACTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

38.2

Weight (kDa)

9.36

Isoelectric Point (pI)

62.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028952)

Species Orthologous Gene IDs
prunus_persica Prupe.2G001600_v2.0.a1
pyrus_communis pycom02g26840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 532
AatII GACGTC 1 cut(s) 288
AccB7I CCANNNNNTGG 2 cut(s) 144, 704
AccBSI CCGCTC 2 cut(s) 584, 590
AccII CGCG 1 cut(s) 998
AciI CCGC 7 cut(s) 330, 523, 582, 588, 761, 996, 998
AclI AACGTT 1 cut(s) 47
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 3 cut(s) 428, 808, 937
AcsI RAATTY 1 cut(s) 440
AcuI CTGAAG 1 cut(s) 843
AcyI GRCGYC 1 cut(s) 285
AdeI CACNNNGTG 1 cut(s) 144
AfaI GTAC 1 cut(s) 124
AfiI CCNNNNNNNGG 3 cut(s) 144, 704, 850
AflII CTTAAG 1 cut(s) 599
AgsI TTSAA 7 cut(s) 184, 212, 326, 445, 683, 727, 848
AjnI CCWGG 2 cut(s) 388, 980
AluBI AGCT 7 cut(s) 59, 175, 208, 247, 305, 901, 988
AluI AGCT 7 cut(s) 59, 175, 208, 247, 305, 901, 988
Alw21I GWGCWC 1 cut(s) 791
Alw26I GTCTC 3 cut(s) 167, 398, 404
AlwI GGATC 1 cut(s) 223
AoxI GGCC 7 cut(s) 150, 258, 290, 428, 808, 937, 993
ApeKI GCWGC 6 cut(s) 56, 172, 305, 332, 341, 862
ApoI RAATTY 1 cut(s) 440
ArsI GACNNNNNNTTYG 2 cut(s) 343, 375
Asp700I GAANNNNTTC 1 cut(s) 799
AspS9I GGNCC 3 cut(s) 151, 259, 359
AsuHPI GGTGA 5 cut(s) 238, 373, 642, 654, 925
AvaII GGWCC 1 cut(s) 359
BalI TGGCCA 3 cut(s) 430, 810, 939
Bbv12I GWGCWC 1 cut(s) 791
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 6 cut(s) 68, 184, 292, 319, 328, 874
BccI CCATC 1 cut(s) 620
BciT130I CCWGG 2 cut(s) 390, 982
BclI TGATCA 1 cut(s) 735
BcoDI GTCTC 3 cut(s) 167, 398, 404
BfaI CTAG 1 cut(s) 528
BfrI CTTAAG 1 cut(s) 599
BisI GCNGC 8 cut(s) 57, 173, 306, 330, 333, 342, 863, 996
BlsI GCNGC 8 cut(s) 58, 174, 307, 331, 334, 343, 864, 997
Bme1390I CCNGG 2 cut(s) 390, 982
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 3 cut(s) 151, 259, 359
BmiI GGNNCC 3 cut(s) 13, 360, 1002
BmrFI CCNGG 2 cut(s) 390, 982
Bpu10I CCTNAGC 1 cut(s) 336
BpuEI CTTGAG 2 cut(s) 887, 1010
BsaHI GRCGYC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 6 cut(s) 36, 262, 388, 980, 996, 1004
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 704, 850
Bse1I ACTGG 4 cut(s) 221, 796, 855, 915
BseBI CCWGG 2 cut(s) 390, 982
BseDI CCNNGG 6 cut(s) 36, 262, 388, 980, 996, 1004
BseGI GGATG 3 cut(s) 619, 694, 751
BseLI CCNNNNNNNGG 3 cut(s) 144, 704, 850
BseMII CTCAG 4 cut(s) 327, 398, 409, 415
BseNI ACTGG 4 cut(s) 221, 796, 855, 915
BseRI GAGGAG 2 cut(s) 567, 645
BseXI GCAGC 6 cut(s) 68, 184, 292, 319, 328, 874
BseYI CCCAGC 1 cut(s) 355
BsgI GTGCAG 1 cut(s) 502
Bsh1236I CGCG 1 cut(s) 998
Bsh1285I CGRYCG 1 cut(s) 964
BshFI GGCC 7 cut(s) 152, 260, 292, 430, 810, 939, 995
BsiEI CGRYCG 1 cut(s) 964
BsiHKAI GWGCWC 1 cut(s) 791
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 3 cut(s) 144, 704, 850
BsmAI GTCTC 3 cut(s) 167, 398, 404
BsmBI CGTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 557
BsnI GGCC 7 cut(s) 152, 260, 292, 430, 810, 939, 995
Bso31I GGTCTC 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 791
Bsp143I GATC 5 cut(s) 157, 228, 634, 691, 735
BspACI CCGC 7 cut(s) 330, 523, 582, 588, 761, 996, 998
BspANI GGCC 7 cut(s) 152, 260, 292, 430, 810, 939, 995
BspCNI CTCAG 4 cut(s) 328, 399, 408, 414
BspFNI CGCG 1 cut(s) 998
BspLI GGNNCC 3 cut(s) 13, 360, 1002
BspPI GGATC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 198
BspTI CTTAAG 1 cut(s) 599
BspTNI GGTCTC 1 cut(s) 398
BsrBI CCGCTC 2 cut(s) 584, 590
BsrI ACTGG 4 cut(s) 221, 796, 855, 915
BssECI CCNNGG 6 cut(s) 36, 262, 388, 980, 996, 1004
BssMI GATC 5 cut(s) 157, 228, 634, 691, 735
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 2 cut(s) 36, 262
Bst2UI CCWGG 2 cut(s) 390, 982
Bst4CI ACNGT 3 cut(s) 548, 716, 952
Bst6I CTCTTC 2 cut(s) 198, 870
BstACI GRCGYC 1 cut(s) 285
BstAFI CTTAAG 1 cut(s) 599
BstDEI CTNAG 4 cut(s) 336, 395, 401, 407
BstDSI CCRYGG 1 cut(s) 996
BstF5I GGATG 3 cut(s) 619, 694, 751
BstFNI CGCG 1 cut(s) 998
BstKTI GATC 5 cut(s) 160, 231, 637, 694, 738
BstMAI GTCTC 3 cut(s) 167, 398, 404
BstMBI GATC 5 cut(s) 157, 228, 634, 691, 735
BstMCI CGRYCG 1 cut(s) 964
BstMWI GCNNNNNNNGC 2 cut(s) 338, 341
BstNI CCWGG 2 cut(s) 390, 982
BstSCI CCNGG 2 cut(s) 388, 980
BstUI CGCG 1 cut(s) 998
BstV1I GCAGC 6 cut(s) 68, 184, 292, 319, 328, 874
BsuRI GGCC 7 cut(s) 152, 260, 292, 430, 810, 939, 995
BtgI CCRYGG 1 cut(s) 996
BtsCI GGATG 3 cut(s) 619, 694, 751
BtsIMutI CAGTG 2 cut(s) 789, 819
Cfr13I GGNCC 3 cut(s) 151, 259, 359
Cfr42I CCGCGG 1 cut(s) 999
CseI GACGC 1 cut(s) 559
Csp6I GTAC 1 cut(s) 123
CviAII CATG 2 cut(s) 155, 373
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 4 cut(s) 336, 395, 401, 407
DpnI GATC 5 cut(s) 159, 230, 636, 693, 737
DpnII GATC 5 cut(s) 157, 228, 634, 691, 735
DraIII CACNNNGTG 1 cut(s) 144
DrdI GACNNNNNNGTC 1 cut(s) 532
DseDI GACNNNNNNGTC 1 cut(s) 532
EaeI YGGCCR 3 cut(s) 428, 808, 937
Eam1104I CTCTTC 2 cut(s) 198, 870
EarI CTCTTC 2 cut(s) 198, 870
EciI GGCGGA 1 cut(s) 538
Eco130I CCWWGG 2 cut(s) 36, 262
Eco31I GGTCTC 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 843
EcoRII CCWGG 2 cut(s) 388, 980
EcoT14I CCWWGG 2 cut(s) 36, 262
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 36, 262
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 2 cut(s) 158, 376
FaiI YATR 9 cut(s) 9, 66, 104, 156, 257, 374, 504, 711, 1016
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FaqI GGGAC 1 cut(s) 557
FatI CATG 2 cut(s) 154, 372
FauI CCCGC 2 cut(s) 589, 595
FbaI TGATCA 1 cut(s) 735
Fnu4HI GCNGC 8 cut(s) 57, 173, 306, 330, 333, 342, 863, 996
FokI GGATG 3 cut(s) 626, 681, 758
Fsp4HI GCNGC 8 cut(s) 57, 173, 306, 330, 333, 342, 863, 996
FspBI CTAG 1 cut(s) 528
GluI GCNGC 8 cut(s) 57, 173, 306, 330, 333, 342, 863, 996
GsaI CCCAGC 1 cut(s) 359
HaeIII GGCC 7 cut(s) 152, 260, 292, 430, 810, 939, 995
HgaI GACGC 1 cut(s) 559
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 2 cut(s) 158, 376
HincII GTYRAC 1 cut(s) 1011
HindII GTYRAC 1 cut(s) 1011
HindIII AAGCTT 1 cut(s) 986
HinfI GANTC 1 cut(s) 916
HpaI GTTAAC 1 cut(s) 1011
HphI GGTGA 5 cut(s) 238, 373, 642, 654, 925
Hpy166II GTNNAC 5 cut(s) 94, 123, 283, 803, 1011
Hpy188I TCNGA 3 cut(s) 195, 408, 639
Hpy188III TCNNGA 6 cut(s) 611, 698, 856, 904, 955, 974
Hpy8I GTNNAC 5 cut(s) 94, 123, 283, 803, 1011
HpyAV CCTTC 9 cut(s) 217, 332, 554, 657, 663, 669, 743, 776, 854
HpyCH4III ACNGT 3 cut(s) 548, 716, 952
HpyCH4IV ACGT 3 cut(s) 47, 285, 552
HpyCH4V TGCA 5 cut(s) 4, 308, 344, 483, 886
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 341
HpyF3I CTNAG 4 cut(s) 336, 395, 401, 407
HpySE526I ACGT 3 cut(s) 47, 285, 552
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 2 cut(s) 158, 376
Ksp22I TGATCA 1 cut(s) 735
KspAI GTTAAC 1 cut(s) 1011
KspI CCGCGG 1 cut(s) 999
Kzo9I GATC 5 cut(s) 157, 228, 634, 691, 735
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 4 cut(s) 589, 752, 786, 957
Lsp1109I GCAGC 6 cut(s) 68, 184, 292, 319, 328, 874
MaeI CTAG 1 cut(s) 528
MaeII ACGT 3 cut(s) 47, 285, 552
MaeIII GTNAC 5 cut(s) 43, 379, 548, 776, 946
MalI GATC 5 cut(s) 159, 230, 636, 693, 737
MbiI CCGCTC 2 cut(s) 584, 590
MboI GATC 5 cut(s) 157, 228, 634, 691, 735
MfeI CAATTG 1 cut(s) 731
MhlI GDGCHC 1 cut(s) 791
MlsI TGGCCA 3 cut(s) 430, 810, 939
MluCI AATT 3 cut(s) 440, 564, 731
MluNI TGGCCA 3 cut(s) 430, 810, 939
MlyI GAGTC 1 cut(s) 925
MmeI TCCRAC 2 cut(s) 152, 386
Mox20I TGGCCA 3 cut(s) 430, 810, 939
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 799
MscI TGGCCA 3 cut(s) 430, 810, 939
MseI TTAA 4 cut(s) 111, 543, 600, 1010
Msp20I TGGCCA 3 cut(s) 430, 810, 939
MspA1I CMGCKG 2 cut(s) 332, 998
MspCI CTTAAG 1 cut(s) 599
MspR9I CCNGG 2 cut(s) 390, 982
MunI CAATTG 1 cut(s) 731
MvaI CCWGG 2 cut(s) 390, 982
MvnI CGCG 1 cut(s) 998
MwoI GCNNNNNNNGC 2 cut(s) 338, 341
NdeII GATC 5 cut(s) 157, 228, 634, 691, 735
NlaIII CATG 2 cut(s) 158, 376
NlaIV GGNNCC 3 cut(s) 13, 360, 1002
NmuCI GTSAC 2 cut(s) 379, 946
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 799
PflMI CCANNNNNTGG 2 cut(s) 144, 704
PkrI GCNGC 8 cut(s) 58, 174, 307, 331, 334, 343, 864, 997
PleI GAGTC 1 cut(s) 924
PpsI GAGTC 1 cut(s) 924
Psp1406I AACGTT 1 cut(s) 47
Psp6I CCWGG 2 cut(s) 388, 980
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 2 cut(s) 388, 980
PspN4I GGNNCC 3 cut(s) 13, 360, 1002
PspPI GGNCC 3 cut(s) 151, 259, 359
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SacII CCGCGG 1 cut(s) 999
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 4 cut(s) 111, 543, 600, 1010
SatI GCNGC 8 cut(s) 57, 173, 306, 330, 333, 342, 863, 996
Sau3AI GATC 5 cut(s) 157, 228, 634, 691, 735
Sau96I GGNCC 3 cut(s) 151, 259, 359
SchI GAGTC 1 cut(s) 925
ScrFI CCNGG 2 cut(s) 390, 982
SduI GDGCHC 1 cut(s) 791
Sfr303I CCGCGG 1 cut(s) 999
SgrBI CCGCGG 1 cut(s) 999
SinI GGWCC 1 cut(s) 359
SmlI CTYRAG 3 cut(s) 599, 902, 989
SmoI CTYRAG 3 cut(s) 599, 902, 989
Sse9I AATT 3 cut(s) 440, 564, 731
SsiI CCGC 7 cut(s) 330, 523, 582, 588, 761, 996, 998
SspI AATATT 1 cut(s) 723
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 2 cut(s) 388, 980
StyI CCWWGG 2 cut(s) 36, 262
TaaI ACNGT 3 cut(s) 548, 716, 952
TaiI ACGT 3 cut(s) 50, 288, 555
TaqI TCGA 4 cut(s) 61, 117, 674, 973
TaqII GACCGA 1 cut(s) 978
TasI AATT 3 cut(s) 440, 564, 731
TatI WGTACW 1 cut(s) 122
TauI GCSGC 2 cut(s) 332, 998
Tru1I TTAA 4 cut(s) 111, 543, 600, 1010
Tru9I TTAA 4 cut(s) 111, 543, 600, 1010
TscAI CASTG 2 cut(s) 796, 826
TseFI GTSAC 2 cut(s) 379, 946
TseI GCWGC 6 cut(s) 56, 172, 305, 332, 341, 862
Tsp45I GTSAC 2 cut(s) 379, 946
TspDTI ATGAA 5 cut(s) 389, 630, 702, 762, 911
TspRI CASTG 2 cut(s) 796, 826
Van91I CCANNNNNTGG 2 cut(s) 144, 704
Vha464I CTTAAG 1 cut(s) 599
VpaK11BI GGWCC 1 cut(s) 359
XapI RAATTY 1 cut(s) 440
XmnI GAANNNNTTC 1 cut(s) 799
XspI CTAG 1 cut(s) 528
ZraI GACGTC 1 cut(s) 286
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.