pycom03g02560

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0028513
Physical Location & Seq
Reverse (-)
1958379 .. 1959590
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 681 bp
ATGGTGCTCCTAAATTCCAACGTCGGCAAGGGCCTCCGATCTCGCATGGATGAATACTTCTATATCGCTCTGGAGACGGCTAAAGTCCTCAAGCTCCAACTCGATGCCCTCCACCGCTCTAACCATAGCTTGCCAGATTGCAGACTCGGTTCGGTAATGGACCAGACTCGGAACTCTGCTATCAACTGCCTCCGAGAGAAGCTCGTGGCCTCCATGAACAGCTACAATGCTATGAGGCAGAAGATCTCATCCGAGTATCGCGAGGCGGTACAGTGTATGTACTACATTGTCTCGGCTGAAAACCCTAGACAGCCTCATCTCTACCGGAGAGGGGGAAACCTTTCTGCAGAAGGCGACCCAGGAGCAAGAGAGATGAGGAGCCAAGTCCTGGCCACGGCTCAGGACCTGGACACGTTCAAAGAGTTCCAAGAGCGGCACGACGCCGTAAAATACATAAAGAAGAACTTGCAGGAGCTGCACCAGGTGTATTTGGACATGGCTTTGTTGGTTGAATCCCAGGGCGAGCAGCTACGAAACGAGAGCGATGAACCCAAACAGAGAAAGACACCTGCAATGGAGCTGAGAGGTGTGAACAACGGGAAGAAGAAGCTGAGAGGCGTCGAGTCTTACCGGGAAAACATCCGCAAGTGGATTGCGTTACGATTATGTTGTTGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

227

Amino Acids

26.08

Weight (kDa)

9.13

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin PF00804 9 - 103 7.9e-14 Syntaxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028513)

Species Orthologous Gene IDs
malus_domestica MD03G1031500.v1.1
pyrus_communis pycom03g02560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 577
Acc36I ACCTGC 1 cut(s) 577
AccB7I CCANNNNNTGG 1 cut(s) 388
AccBSI CCGCTC 2 cut(s) 117, 433
AccII CGCG 1 cut(s) 261
AciI CCGC 4 cut(s) 115, 266, 433, 643
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 1 cut(s) 13
AcyI GRCGYC 2 cut(s) 441, 618
AdeI CACNNNGTG 1 cut(s) 484
AfaI GTAC 2 cut(s) 270, 281
AfiI CCNNNNNNNGG 3 cut(s) 331, 388, 394
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 2 cut(s) 418, 512
AjnI CCWGG 5 cut(s) 358, 387, 405, 480, 516
AluBI AGCT 8 cut(s) 94, 129, 202, 222, 475, 529, 580, 610
AluI AGCT 8 cut(s) 94, 129, 202, 222, 475, 529, 580, 610
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 68, 295
AlwNI CAGNNNCTG 2 cut(s) 406, 475
AoxI GGCC 3 cut(s) 31, 207, 390
ApeKI GCWGC 3 cut(s) 475, 526, 675
ApoI RAATTY 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 340
AspS9I GGNCC 3 cut(s) 31, 160, 403
AsuC2I CCSGG 1 cut(s) 632
AvaII GGWCC 2 cut(s) 160, 403
BalI TGGCCA 1 cut(s) 392
BauI CACGAG 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 3 cut(s) 462, 538, 662
BceAI ACGGC 3 cut(s) 93, 411, 428
BciT130I CCWGG 5 cut(s) 360, 389, 407, 482, 518
BcnI CCSGG 1 cut(s) 632
BcoDI GTCTC 2 cut(s) 68, 295
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 345
BfuAI ACCTGC 1 cut(s) 577
BglII AGATCT 1 cut(s) 243
BisI GCNGC 4 cut(s) 434, 476, 527, 676
BlsI GCNGC 4 cut(s) 435, 477, 528, 677
Bme1390I CCNGG 6 cut(s) 360, 389, 407, 482, 518, 632
Bme18I GGWCC 2 cut(s) 160, 403
BmgT120I GGNCC 3 cut(s) 31, 160, 403
BmiI GGNNCC 1 cut(s) 380
BmrFI CCNGG 6 cut(s) 360, 389, 407, 482, 518, 632
BmsI GCATC 1 cut(s) 94
BplI GAGNNNNNCTC 2 cut(s) 186, 218
BpmI CTGGAG 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 632
BsaHI GRCGYC 2 cut(s) 441, 618
BsaJI CCNNGG 4 cut(s) 358, 393, 516, 517
BsaWI WCCGGW 1 cut(s) 324
Bsc4I CCNNNNNNNGG 3 cut(s) 331, 388, 394
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 5 cut(s) 360, 389, 407, 482, 518
BseDI CCNNGG 4 cut(s) 358, 393, 516, 517
BseGI GGATG 3 cut(s) 55, 248, 639
BseLI CCNNNNNNNGG 3 cut(s) 331, 388, 394
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 3 cut(s) 413, 572, 602
BseRI GAGGAG 1 cut(s) 391
BseXI GCAGC 3 cut(s) 462, 538, 662
BsgI GTGCAG 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 3 cut(s) 33, 209, 392
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 2 cut(s) 325, 631
BslI CCNNNNNNNGG 3 cut(s) 331, 388, 394
BsmAI GTCTC 2 cut(s) 68, 295
BsmBI CGTCTC 1 cut(s) 68
BsnI GGCC 3 cut(s) 33, 209, 392
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 38, 243
Bsp68I TCGCGA 1 cut(s) 261
BspACI CCGC 4 cut(s) 115, 266, 433, 643
BspANI GGCC 3 cut(s) 33, 209, 392
BspCNI CTCAG 3 cut(s) 412, 573, 603
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 380
BspMAI CTGCAG 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 577
BsrBI CCGCTC 2 cut(s) 117, 433
BsrDI GCAATG 1 cut(s) 579
BssECI CCNNGG 4 cut(s) 358, 393, 516, 517
BssMI GATC 2 cut(s) 38, 243
BssNI GRCGYC 2 cut(s) 441, 618
BssSI CACGAG 1 cut(s) 203
Bst2BI CACGAG 1 cut(s) 203
Bst2UI CCWGG 5 cut(s) 360, 389, 407, 482, 518
Bst4CI ACNGT 1 cut(s) 273
BstACI GRCGYC 2 cut(s) 441, 618
BstAPI GCANNNNNTGC 1 cut(s) 475
BstC8I GCNNGC 2 cut(s) 131, 524
BstDEI CTNAG 3 cut(s) 399, 581, 611
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 3 cut(s) 55, 248, 639
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 2 cut(s) 41, 246
BstMAI GTCTC 2 cut(s) 68, 295
BstMBI GATC 2 cut(s) 38, 243
BstMWI GCNNNNNNNGC 1 cut(s) 475
BstNI CCWGG 5 cut(s) 360, 389, 407, 482, 518
BstSCI CCNGG 6 cut(s) 358, 387, 405, 480, 516, 630
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 3 cut(s) 462, 538, 662
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 3 cut(s) 33, 209, 392
BtgI CCRYGG 1 cut(s) 393
BtgZI GCGATG 1 cut(s) 558
BtsCI GGATG 3 cut(s) 55, 248, 639
BtsIMutI CAGTG 1 cut(s) 278
BtuMI TCGCGA 1 cut(s) 261
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 2 cut(s) 131, 524
CaiI CAGNNNCTG 2 cut(s) 406, 475
Cfr13I GGNCC 3 cut(s) 31, 160, 403
CseI GACGC 2 cut(s) 449, 607
CsiI ACCWGGT 1 cut(s) 480
Csp6I GTAC 2 cut(s) 269, 280
CviAII CATG 3 cut(s) 46, 214, 496
CviQI GTAC 2 cut(s) 269, 280
DdeI CTNAG 3 cut(s) 399, 581, 611
DpnI GATC 2 cut(s) 40, 245
DpnII GATC 2 cut(s) 38, 243
DraIII CACNNNGTG 1 cut(s) 484
EaeI YGGCCR 1 cut(s) 390
Eco47I GGWCC 2 cut(s) 160, 403
EcoO109I RGGNCCY 2 cut(s) 31, 403
EcoRII CCWGG 5 cut(s) 358, 387, 405, 480, 516
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 3 cut(s) 49, 217, 499
FaiI YATR 9 cut(s) 47, 63, 126, 215, 233, 278, 455, 497, 667
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FatI CATG 3 cut(s) 45, 213, 495
Fnu4HI GCNGC 4 cut(s) 434, 476, 527, 676
FokI GGATG 3 cut(s) 62, 235, 626
Fsp4HI GCNGC 4 cut(s) 434, 476, 527, 676
FspBI CTAG 1 cut(s) 306
GluI GCNGC 4 cut(s) 434, 476, 527, 676
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 3 cut(s) 33, 209, 392
HapII CCGG 2 cut(s) 325, 631
HgaI GACGC 2 cut(s) 449, 607
Hin1I GRCGYC 2 cut(s) 441, 618
Hin1II CATG 3 cut(s) 49, 217, 499
HinfI GANTC 4 cut(s) 144, 166, 512, 623
HpaII CCGG 2 cut(s) 325, 631
Hpy166II GTNNAC 1 cut(s) 592
Hpy188I TCNGA 4 cut(s) 38, 171, 194, 253
Hpy188III TCNNGA 3 cut(s) 71, 260, 401
Hpy8I GTNNAC 1 cut(s) 592
Hpy99I CGWCG 3 cut(s) 26, 443, 623
HpyAV CCTTC 1 cut(s) 344
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4IV ACGT 2 cut(s) 21, 413
HpyCH4V TGCA 5 cut(s) 141, 347, 469, 478, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 475
HpyF3I CTNAG 3 cut(s) 399, 581, 611
HpySE526I ACGT 2 cut(s) 21, 413
Hsp92I GRCGYC 2 cut(s) 441, 618
Hsp92II CATG 3 cut(s) 49, 217, 499
Kzo9I GATC 2 cut(s) 38, 243
LmnI GCTCC 6 cut(s) 12, 99, 362, 378, 472, 577
Lsp1109I GCAGC 3 cut(s) 462, 538, 662
LweI GCATC 1 cut(s) 94
MabI ACCWGGT 1 cut(s) 480
MaeI CTAG 1 cut(s) 306
MaeII ACGT 2 cut(s) 21, 413
MaeIII GTNAC 1 cut(s) 657
MalI GATC 2 cut(s) 40, 245
MbiI CCGCTC 2 cut(s) 117, 433
MboI GATC 2 cut(s) 38, 243
MboII GAAGA 4 cut(s) 253, 472, 613, 616
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 1 cut(s) 13
MluNI TGGCCA 1 cut(s) 392
MlyI GAGTC 3 cut(s) 138, 160, 632
MmeI TCCRAC 2 cut(s) 42, 121
Mox20I TGGCCA 1 cut(s) 392
MroXI GAANNNNTTC 1 cut(s) 340
MscI TGGCCA 1 cut(s) 392
Msp20I TGGCCA 1 cut(s) 392
MspI CCGG 2 cut(s) 325, 631
MspR9I CCNGG 6 cut(s) 360, 389, 407, 482, 518, 632
MvaI CCWGG 5 cut(s) 360, 389, 407, 482, 518
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 475
NciI CCSGG 1 cut(s) 632
NdeII GATC 2 cut(s) 38, 243
NlaIII CATG 3 cut(s) 49, 217, 499
NlaIV GGNNCC 1 cut(s) 380
NmeAIII GCCGAG 1 cut(s) 272
NruI TCGCGA 1 cut(s) 261
PaqCI CACCTGC 1 cut(s) 577
PasI CCCWGGG 1 cut(s) 517
PdmI GAANNNNTTC 1 cut(s) 340
PfeI GAWTC 1 cut(s) 512
PflMI CCANNNNNTGG 1 cut(s) 388
PkrI GCNGC 4 cut(s) 435, 477, 528, 677
PleI GAGTC 3 cut(s) 138, 160, 631
PpsI GAGTC 3 cut(s) 138, 160, 631
PpuMI RGGWCCY 1 cut(s) 403
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 5 cut(s) 358, 387, 405, 480, 516
PspGI CCWGG 5 cut(s) 358, 387, 405, 480, 516
PspN4I GGNNCC 1 cut(s) 380
PspPI GGNCC 3 cut(s) 31, 160, 403
PspPPI RGGWCCY 1 cut(s) 403
PstI CTGCAG 1 cut(s) 349
PstNI CAGNNNCTG 2 cut(s) 406, 475
PsuI RGATCY 1 cut(s) 243
RruI TCGCGA 1 cut(s) 261
RsaI GTAC 2 cut(s) 270, 281
RsaNI GTAC 2 cut(s) 269, 280
SatI GCNGC 4 cut(s) 434, 476, 527, 676
Sau3AI GATC 2 cut(s) 38, 243
Sau96I GGNCC 3 cut(s) 31, 160, 403
SchI GAGTC 3 cut(s) 138, 160, 632
ScrFI CCNGG 6 cut(s) 360, 389, 407, 482, 518, 632
SduI GDGCHC 1 cut(s) 9
SexAI ACCWGGT 1 cut(s) 480
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 345
SinI GGWCC 2 cut(s) 160, 403
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 13
SsiI CCGC 4 cut(s) 115, 266, 433, 643
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 6 cut(s) 358, 387, 405, 480, 516, 630
TaaI ACNGT 1 cut(s) 273
TaiI ACGT 2 cut(s) 24, 416
TaqI TCGA 2 cut(s) 102, 621
TasI AATT 1 cut(s) 13
TatI WGTACW 1 cut(s) 279
TauI GCSGC 1 cut(s) 436
TfiI GAWTC 1 cut(s) 512
TscAI CASTG 1 cut(s) 278
TseI GCWGC 3 cut(s) 475, 526, 675
TspDTI ATGAA 3 cut(s) 66, 230, 561
TspRI CASTG 1 cut(s) 278
Van91I CCANNNNNTGG 1 cut(s) 388
VpaK11BI GGWCC 2 cut(s) 160, 403
XapI RAATTY 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.