Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0022534

Physical Location & Seq

Genomic Coordinates Forward (+)

2878381 .. 2879412

Gene Structure 1032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCAAGGAGTACTCAAAACTTTTACATCACACGGAAGCATTGTGAAAAATGGAGTTTTGAGACACATCCGTCTTGTGAATCCCCTGCTCCAGCCTGTTGTGTTTTCACGTTTTGAGTCTGCTACGCCTGCCAGTACCCGCATAGAAGAGCATGGTTTTGAAAGCACCAGAATTGCAGATGTCTTGAATGCAAAAGGTAAAGGTGCTGATGGTTCCTGGCTCTGGTGCACAACCGATGACTCTGTTTATGATGCTGTTAAGTCGGACCCAGCACAATGTTGGAGCCTTAGTTGTTGTGAAATCCGGAGAGCAAAAATCTCCTGCAGGAATCATAACGGAGAGAGTATCTCAGGAAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

121

Amino Acids

13.19

Weight (kDa)

8.71

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022534)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g03600
rosa_samantha	Rh5AG486800 Rh5BG507100 Rh5CG530600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	69
AccIII	TCCGGA	1 cut(s)	303
AciI	CCGC	1 cut(s)	139
AfaI	GTAC	2 cut(s)	12, 136
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	161, 187
AjnI	CCWGG	1 cut(s)	215
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	55
Alw44I	GTGCAC	1 cut(s)	226
Aor13HI	TCCGGA	1 cut(s)	303
ApaLI	GTGCAC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	230
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	55
BfmI	CTRYAG	1 cut(s)	322
BmcAI	AGTACT	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	3 cut(s)	214, 267, 284
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	241
BplI	GAGNNNNNCTC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	230
BseYI	CCCAGC	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp13I	TCCGGA	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	356
BspACI	CCGC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	362
BspEI	TCCGGA	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	214, 267, 284
BspMAI	CTGCAG	1 cut(s)	326
BspQI	GCTCTTC	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	287, 349
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	359
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstSFI	CTRYAG	1 cut(s)	322
BstSLI	GKGCMC	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	11, 135
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	3 cut(s)	94, 220, 285
CviKI_1	RGCY	3 cut(s)	94, 220, 285
CviQI	GTAC	2 cut(s)	11, 135
DdeI	CTNAG	2 cut(s)	287, 349
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
DrdI	GACNNNNNNGTC	1 cut(s)	69
DseDI	GACNNNNNNGTC	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	215
FaeI	CATG	1 cut(s)	155
FaiI	YATR	5 cut(s)	143, 153, 249, 333, 361
FatI	CATG	1 cut(s)	151
FauI	CCCGC	1 cut(s)	146
FokI	GGATG	1 cut(s)	53
GsaI	CCCAGC	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	74
HapII	CCGG	1 cut(s)	304
Hin1II	CATG	1 cut(s)	155
HinfI	GANTC	4 cut(s)	79, 116, 239, 328
HpaII	CCGG	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	3 cut(s)	184, 304, 351
Hpy8I	GTNNAC	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	5 cut(s)	4, 176, 191, 228, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	287, 349
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	1 cut(s)	155
Kpn2I	TCCGGA	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	356
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	93, 282
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	1 cut(s)	109
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MboII	GAAGA	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	1 cut(s)	171
MlyI	GAGTC	2 cut(s)	125, 233
MmeI	TCCRAC	2 cut(s)	243, 260
MroI	TCCGGA	1 cut(s)	303
MseI	TTAA	1 cut(s)	258
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	1 cut(s)	217
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	1 cut(s)	356
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	3 cut(s)	214, 267, 284
PciSI	GCTCTTC	1 cut(s)	141
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	79, 328
PleI	GAGTC	2 cut(s)	124, 233
PpsI	GAGTC	2 cut(s)	124, 233
Psp6I	CCWGG	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	214, 267, 284
PspPI	GGNCC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	12, 136
RsaNI	GTAC	2 cut(s)	11, 135
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	258
Sau3AI	GATC	1 cut(s)	356
Sau96I	GGNCC	1 cut(s)	265
SbfI	CCTGCAGG	1 cut(s)	326
ScaI	AGTACT	1 cut(s)	12
SchI	GAGTC	2 cut(s)	125, 233
ScrFI	CCNGG	1 cut(s)	217
SdaI	CCTGCAGG	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	3 cut(s)	112, 199, 205
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	322
SinI	GGWCC	1 cut(s)	265
Sse8387I	CCTGCAGG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	112
TasI	AATT	1 cut(s)	171
TatI	WGTACW	1 cut(s)	10
TfiI	GAWTC	2 cut(s)	79, 328
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TspGWI	ACGGA	3 cut(s)	48, 59, 351
VneI	GTGCAC	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
ZrmI	AGTACT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.