Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0022534

Physical Location & Seq

Genomic Coordinates Reverse (-)

74169625 .. 74173033

Gene Structure 3409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG530600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCAAGGAGCACTCAAAGCCTTTTCATCACAGGGGAACTTTGTGAAAAATGCAGTTTTGCGACACGTCCGTGTTGTGAATCTCCTAATTCAGCCTGCTTTGTTTTCACGCTTTGAGTCTACTGCGCCTGCCCGCATAGAAGAGCAAGGTTTCGAAAGCACTAGGATTGCAGACATCTTGAACTCTAAAGGTAAAGGTGCTGATGGTTCCTGGCTGTGGTGCACTACAGATGATTCTGTTTATGATGCTGTTAAGTCGGTAAGCATTTCTGAGCTTTGTGAAATTTCAAATTATTGCAATGATTTGATGAGCTGTGGCATGGTGTATTTATGTCATTGGTCGTTTCCTTTGCAGATGACCCAGCACAATGTTGGAGCCTTGGTGGTCGTGAAACCTGGAGAGCAAAAATCTATTGCAGGAATCATAACAGAGAGAGGTACTTTTACATTAAGGCTTCCATGTCTGAACCACCGGATATATAACACATTGCTCATCTTGTGGGAGATTATGATAAGGGTCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

174

Amino Acids

19.47

Weight (kDa)

7.62

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022534)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g03600
rosa_samantha	Rh5AG486800 Rh5BG507100 Rh5CG530600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	119
AciI	CCGC	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	282
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	181, 288
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	2 cut(s)	209, 394
AleI	CACNNNNGTG	1 cut(s)	69
AluBI	AGCT	2 cut(s)	274, 312
AluI	AGCT	2 cut(s)	274, 312
Alw21I	GWGCWC	2 cut(s)	13, 224
Alw44I	GTGCAC	1 cut(s)	220
ApaLI	GTGCAC	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	517
AsuII	TTCGAA	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	13, 224
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	211, 396
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	225
Bme1390I	CCNGG	2 cut(s)	211, 396
Bme18I	GGWCC	1 cut(s)	517
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	3 cut(s)	208, 376, 518
BmrFI	CCNGG	2 cut(s)	211, 396
BmsI	GCATC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	417
Bpu14I	TTCGAA	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	471
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse3DI	GCAATG	2 cut(s)	304, 485
BseBI	CCWGG	2 cut(s)	211, 396
BseDI	CCNNGG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	2 cut(s)	304, 485
BseMII	CTCAG	1 cut(s)	261
BseSI	GKGCMC	1 cut(s)	224
BseYI	CCCAGC	1 cut(s)	360
BsiHKAI	GWGCWC	2 cut(s)	13, 224
BsiSI	CCGG	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	13, 224
BspACI	CCGC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	208, 376, 518
BspQI	GCTCTTC	1 cut(s)	135
BspT104I	TTCGAA	1 cut(s)	153
BsrDI	GCAATG	2 cut(s)	304, 485
BssECI	CCNNGG	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	211, 396
Bst6I	CTCTTC	1 cut(s)	135
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	96, 129, 133
BstDEI	CTNAG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	2 cut(s)	211, 396
BstSCI	CCNGG	2 cut(s)	209, 394
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	224
BtrI	CACGTC	1 cut(s)	67
Cac8I	GCNNGC	3 cut(s)	96, 129, 133
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	517
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	2 cut(s)	319, 459
CviJI	RGCY	7 cut(s)	20, 94, 214, 274, 312, 377, 454
CviKI_1	RGCY	7 cut(s)	20, 94, 214, 274, 312, 377, 454
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	517
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRII	CCWGG	2 cut(s)	209, 394
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	2 cut(s)	322, 462
FaiI	YATR	9 cut(s)	137, 243, 320, 331, 425, 460, 478, 480, 509
FatI	CATG	2 cut(s)	318, 458
FauI	CCCGC	1 cut(s)	140
FblI	GTMKAC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	364
GsuI	CTGGAG	1 cut(s)	417
HapII	CCGG	1 cut(s)	472
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	322, 462
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	4 cut(s)	79, 116, 233, 420
HpaII	CCGG	1 cut(s)	472
Hpy166II	GTNNAC	2 cut(s)	120, 222
Hpy188I	TCNGA	2 cut(s)	271, 465
Hpy188III	TCNNGA	2 cut(s)	178, 388
Hpy8I	GTNNAC	2 cut(s)	120, 222
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	7 cut(s)	4, 53, 170, 222, 297, 352, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	322, 462
HspAI	GCGC	1 cut(s)	125
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	2 cut(s)	8, 374
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	66
MboII	GAAGA	1 cut(s)	152
MhlI	GDGCHC	2 cut(s)	13, 224
MluCI	AATT	3 cut(s)	87, 282, 289
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	1 cut(s)	428
MseI	TTAA	2 cut(s)	252, 449
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	2 cut(s)	211, 396
MvaI	CCWGG	2 cut(s)	211, 396
MwoI	GCNNNNNNNGC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	322, 462
NlaIV	GGNNCC	3 cut(s)	208, 376, 518
NspV	TTCGAA	1 cut(s)	153
OliI	CACNNNNGTG	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	135
PfeI	GAWTC	3 cut(s)	79, 233, 420
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	517
Psp5II	RGGWCCY	1 cut(s)	517
Psp6I	CCWGG	2 cut(s)	209, 394
PspFI	CCCAGC	1 cut(s)	360
PspGI	CCWGG	2 cut(s)	209, 394
PspN4I	GGNNCC	3 cut(s)	208, 376, 518
PspPI	GGNCC	1 cut(s)	517
PspPPI	RGGWCCY	1 cut(s)	517
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	252, 449
Sau96I	GGNCC	1 cut(s)	517
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	211, 396
SduI	GDGCHC	2 cut(s)	13, 224
SetI	ASST	8 cut(s)	69, 151, 193, 199, 276, 314, 397, 439
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	153
SinI	GGWCC	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	3 cut(s)	87, 282, 289
SsiI	CCGC	1 cut(s)	133
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	209, 394
StyI	CCWWGG	1 cut(s)	378
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	153
TasI	AATT	3 cut(s)	87, 282, 289
TfiI	GAWTC	3 cut(s)	79, 233, 420
Tru1I	TTAA	2 cut(s)	252, 449
Tru9I	TTAA	2 cut(s)	252, 449
TspDTI	ATGAA	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	59
VneI	GTGCAC	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	1 cut(s)	282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.