pycom03g07630

cation-transporting ATPase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0028899
Physical Location & Seq
Reverse (-)
6055232 .. 6056293
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGGGTTCAAAGGCATGGAGTTACCCATTTGAAGAAGTAGAAGCCCATACGAGTCAATCTATTGTATATGTTGGCATTGATAGTACTCTTGCCGGCCTCATTTATTTTGAGGATCAGATAAGGGTAGATGCAGGACAAGTTGTTAAATCTTTATCTAAGCAAGGAATCGATGTATACATGCTATCTGGGGACAAAAGCAATAACGCGGAGTACGTCGCGTCTGCTGTTGGTATTCCGAAAGAGAAGGTAAGGAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1-E2_ATPase HMA Hydrolase

Protein Analysis

87

Amino Acids

9.35

Weight (kDa)

4.94

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 22 - 78 3.1e-06 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0028899)

Species Orthologous Gene IDs
malus_domestica MD11G1220100.v1.1
pyrus_communis pycom03g07630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AccII CGCG 2 cut(s) 206, 218
AciI CCGC 1 cut(s) 206
AclWI GGATC 1 cut(s) 120
AfaI GTAC 2 cut(s) 85, 212
AgsI TTSAA 2 cut(s) 9, 32
AlwI GGATC 1 cut(s) 120
AoxI GGCC 1 cut(s) 94
BmcAI AGTACT 1 cut(s) 85
BmsI GCATC 1 cut(s) 118
Bsa29I ATCGAT 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 92
BseCI ATCGAT 1 cut(s) 168
Bsh1236I CGCG 2 cut(s) 206, 218
BshFI GGCC 1 cut(s) 96
BshVI ATCGAT 1 cut(s) 168
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 1 cut(s) 206
BspANI GGCC 1 cut(s) 96
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 2 cut(s) 206, 218
BspPI GGATC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssMI GATC 1 cut(s) 112
BssNAI GTATAC 1 cut(s) 175
Bst1107I GTATAC 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 156
BstFNI CGCG 2 cut(s) 206, 218
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 181
BstUI CGCG 2 cut(s) 206, 218
BstZ17I GTATAC 1 cut(s) 175
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 1 cut(s) 96
BsuTUI ATCGAT 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 92
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 1 cut(s) 207
Csp6I GTAC 2 cut(s) 84, 211
CviAII CATG 2 cut(s) 15, 178
CviJI RGCY 2 cut(s) 44, 96
CviKI_1 RGCY 2 cut(s) 44, 96
CviQI GTAC 2 cut(s) 84, 211
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
FaeI CATG 2 cut(s) 18, 181
FaiI YATR 6 cut(s) 16, 48, 67, 69, 175, 179
FalI AAGNNNNNCTT 1 cut(s) 241
FaqI GGGAC 1 cut(s) 203
FatI CATG 2 cut(s) 14, 177
FblI GTMKAC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 96
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 207
Hin1II CATG 2 cut(s) 18, 181
HinfI GANTC 2 cut(s) 52, 165
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 117, 237
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 2 cut(s) 18, 181
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 112
LpnPI CCDG 3 cut(s) 106, 117, 171
LweI GCATC 1 cut(s) 118
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 44
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 2 cut(s) 103, 107
MroNI GCCGGC 1 cut(s) 92
MseI TTAA 2 cut(s) 144, 259
MspI CCGG 1 cut(s) 93
MvnI CGCG 2 cut(s) 206, 218
NaeI GCCGGC 1 cut(s) 94
NdeII GATC 1 cut(s) 112
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 2 cut(s) 18, 181
NspI RCATGY 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdiI GCCGGC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 165
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
RsaI GTAC 2 cut(s) 85, 212
RsaNI GTAC 2 cut(s) 84, 211
SaqAI TTAA 2 cut(s) 144, 259
Sau3AI GATC 1 cut(s) 112
ScaI AGTACT 1 cut(s) 85
SchI GAGTC 1 cut(s) 61
SetI ASST 2 cut(s) 216, 249
SfaNI GCATC 1 cut(s) 118
SsiI CCGC 1 cut(s) 206
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 168
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 2 cut(s) 144, 259
Tru9I TTAA 2 cut(s) 144, 259
XceI RCATGY 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 174
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.