Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0028487

Physical Location & Seq

Genomic Coordinates Forward (+)

13583537 .. 13584326

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAATCTCGGGTGGGACATGATAATCGGAATTAACCAGCATTTAATAGCATGGAATAGTCCAGATGACCCTTCTCCGGGAGACTTTATATGGGAGACGAAGCTGCTCAACCATTTGGAGCCATGTGGAAAAGGGTCTAATGAGTACTTGAGAAGCAGTCCGTGGAACGGCCTTTTGTTCAGTGGAAAACCCACCAAGGAACTTCCGGCTTTGAACGTCACTTTTGTTCTTTCCTGGGTCGCTGAAGGATTGGAACTTGAAAGATTTTTGAAATGTTACGTGAGGAAAAAGCCGTTGAGTTGCAGAAATGATGGATTTGCTAGGTATATGCGGTTGAAATTGATGGATACTACACACAATTGGATAAATAAAAGCAGGAACCTCGTTGAATGCAGGGCCAGATGCTTATCGAATTTTCATGTTCTGCTTATACAGACATGGAGGTTAGAGGAGGAGGCAGCGGTTCCGCTATTTGGTTTGAATAGAAGACAGTTGGCTTGGCTGTCCAGGATCAAACATTTTTGGTACCTATCAAGAATTAGGAGCACATATTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

187

Amino Acids

21.88

Weight (kDa)

9.45

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028487)

Species	Orthologous Gene IDs
malus_domestica	MD03G1171000.v1.1
pyrus_communis	pycom03g12810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	525
AciI	CCGC	3 cut(s)	331, 461, 467
AclWI	GGATC	1 cut(s)	518
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	146, 527
AfiI	CCNNNNNNNGG	4 cut(s)	76, 77, 167, 473
AgsI	TTSAA	6 cut(s)	214, 260, 271, 337, 389, 481
AjnI	CCWGG	2 cut(s)	233, 506
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	2 cut(s)	75, 89
AlwI	GGATC	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	8
AoxI	GGCC	2 cut(s)	169, 396
ApeKI	GCWGC	2 cut(s)	103, 458
ApoI	RAATTY	1 cut(s)	412
Asp718I	GGTACC	1 cut(s)	525
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	493
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	2 cut(s)	90, 470
BccI	CCATC	2 cut(s)	305, 337
BceAI	ACGGC	2 cut(s)	184, 277
BcgI	CGANNNNNNTGC	2 cut(s)	364, 398
BciT130I	CCWGG	2 cut(s)	235, 508
BciVI	GTATCC	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	75, 89
BfaI	CTAG	1 cut(s)	321
BfuI	GTATCC	1 cut(s)	340
BisI	GCNGC	2 cut(s)	104, 459
BlsI	GCNGC	2 cut(s)	105, 460
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	3 cut(s)	78, 235, 508
BmeT110I	CYCGRG	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	4 cut(s)	120, 380, 465, 527
BmrFI	CCNGG	3 cut(s)	78, 235, 508
BmsI	GCATC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	78
BsaAI	YACGTR	1 cut(s)	280
BsaBI	GATNNNNATC	1 cut(s)	406
BsaJI	CCNNGG	3 cut(s)	161, 195, 234
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 77, 167, 473
Bse8I	GATNNNNATC	1 cut(s)	406
BseBI	CCWGG	2 cut(s)	235, 508
BseDI	CCNNGG	3 cut(s)	161, 195, 234
BseJI	GATNNNNATC	1 cut(s)	406
BseLI	CCNNNNNNNGG	4 cut(s)	76, 77, 167, 473
BseRI	GAGGAG	2 cut(s)	464, 467
BseXI	GCAGC	2 cut(s)	90, 470
BshFI	GGCC	2 cut(s)	171, 398
BshNI	GGYRCC	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	548
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	77, 206
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	4 cut(s)	76, 77, 167, 473
BsmAI	GTCTC	2 cut(s)	75, 89
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	171, 398
BsoBI	CYCGRG	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	548
Bsp143I	GATC	1 cut(s)	510
BspACI	CCGC	3 cut(s)	331, 461, 467
BspANI	GGCC	2 cut(s)	171, 398
BspLI	GGNNCC	4 cut(s)	120, 380, 465, 527
BspPI	GGATC	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	525
BssECI	CCNNGG	3 cut(s)	161, 195, 234
BssMI	GATC	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	235, 508
Bst4CI	ACNGT	1 cut(s)	492
BstBAI	YACGTR	1 cut(s)	280
BstDSI	CCRYGG	1 cut(s)	161
BstKTI	GATC	1 cut(s)	513
BstMAI	GTCTC	2 cut(s)	75, 89
BstMBI	GATC	1 cut(s)	510
BstNI	CCWGG	2 cut(s)	235, 508
BstSCI	CCNGG	3 cut(s)	76, 233, 506
BstV1I	GCAGC	2 cut(s)	90, 470
BstV2I	GAAGAC	1 cut(s)	493
BsuI	GTATCC	1 cut(s)	340
BsuRI	GGCC	2 cut(s)	171, 398
BtgI	CCRYGG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	145, 526
CviAII	CATG	5 cut(s)	19, 51, 123, 419, 438
CviJI	RGCY	8 cut(s)	103, 121, 171, 209, 292, 398, 497, 502
CviKI_1	RGCY	8 cut(s)	103, 121, 171, 209, 292, 398, 497, 502
CviQI	GTAC	2 cut(s)	145, 526
DpnI	GATC	1 cut(s)	512
DpnII	GATC	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	233, 506
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	5 cut(s)	22, 54, 126, 422, 441
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	5 cut(s)	18, 50, 122, 418, 437
Fnu4HI	GCNGC	2 cut(s)	104, 459
Fsp4HI	GCNGC	2 cut(s)	104, 459
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	2 cut(s)	104, 459
HaeIII	GGCC	2 cut(s)	171, 398
HapII	CCGG	2 cut(s)	77, 206
Hin1II	CATG	5 cut(s)	22, 54, 126, 422, 441
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	77, 206
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	2 cut(s)	62, 534
HpyAV	CCTTC	2 cut(s)	81, 239
HpyCH4III	ACNGT	1 cut(s)	492
HpyCH4IV	ACGT	2 cut(s)	216, 279
HpyCH4V	TGCA	2 cut(s)	303, 393
HpySE526I	ACGT	2 cut(s)	216, 279
Hsp92II	CATG	5 cut(s)	22, 54, 126, 422, 441
KpnI	GGTACC	1 cut(s)	529
Kzo9I	GATC	1 cut(s)	510
LmnI	GCTCC	2 cut(s)	118, 543
Lsp1109I	GCAGC	2 cut(s)	90, 470
LweI	GCATC	1 cut(s)	392
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	2 cut(s)	216, 279
MaeIII	GTNAC	2 cut(s)	217, 275
MalI	GATC	1 cut(s)	512
MboI	GATC	1 cut(s)	510
MboII	GAAGA	1 cut(s)	498
MfeI	CAATTG	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	548
MluCI	AATT	5 cut(s)	30, 338, 358, 412, 537
MnlI	CCTC	6 cut(s)	276, 392, 435, 442, 445, 448
MseI	TTAA	3 cut(s)	33, 44, 559
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	2 cut(s)	77, 206
MspR9I	CCNGG	3 cut(s)	78, 235, 508
MunI	CAATTG	1 cut(s)	358
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	235, 508
NciI	CCSGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	510
NlaIII	CATG	5 cut(s)	22, 54, 126, 422, 441
NlaIV	GGNNCC	4 cut(s)	120, 380, 465, 527
NmuCI	GTSAC	1 cut(s)	217
PctI	GAATGC	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	4
PfoI	TCCNGGA	2 cut(s)	76, 506
PkrI	GCNGC	2 cut(s)	105, 460
Ppu21I	YACGTR	1 cut(s)	280
Psp6I	CCWGG	2 cut(s)	233, 506
PspGI	CCWGG	2 cut(s)	233, 506
PspN4I	GGNNCC	4 cut(s)	120, 380, 465, 527
PspPI	GGNCC	1 cut(s)	396
RsaI	GTAC	2 cut(s)	146, 527
RsaNI	GTAC	2 cut(s)	145, 526
SaqAI	TTAA	3 cut(s)	33, 44, 559
SatI	GCNGC	2 cut(s)	104, 459
Sau3AI	GATC	1 cut(s)	510
Sau96I	GGNCC	1 cut(s)	396
ScaI	AGTACT	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	78, 235, 508
SduI	GDGCHC	1 cut(s)	548
SetI	ASST	7 cut(s)	105, 219, 282, 326, 384, 446, 531
SfaNI	GCATC	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	5 cut(s)	30, 338, 358, 412, 537
SsiI	CCGC	3 cut(s)	331, 461, 467
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	76, 233, 506
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	492
TaiI	ACGT	2 cut(s)	219, 282
TaqI	TCGA	1 cut(s)	410
TasI	AATT	5 cut(s)	30, 338, 358, 412, 537
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	3 cut(s)	33, 44, 559
Tru9I	TTAA	3 cut(s)	33, 44, 559
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	103, 458
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	17, 407
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	412
XspI	CTAG	1 cut(s)	321
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.