pycom03g13840

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0029237
Physical Location & Seq
Forward (+)
14930444 .. 14930770
327 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
ATGGGCATTGCTCTCCTTCGAATGATGCCTAACCGTCCCTTCTTGTCATGCGCTGCCTGTGCTTTTGCATTTGCTATTTCAAGTCCTATTGGTGTGGCAATTGGAATCCTAATAGACGCAACAACCCAAGGAGCTGTGGCTGATTGGATATTCGCAATTTCAATGGCTCTAGCATGTGGAGTGTTCATCTACATAGCAATAAACCATTTATTGGCAAAGGGTTATGCGCCCAACAAAGCAGTTTCAGTCGACAAACCCCAGTACAAGTTTCTGGCAGTTTTGTTGGGTATTGGGGTAATAGCTGTTGTGATGATTTGGGACACTTGA

Protein Analysis

109

Amino Acids

11.39

Weight (kDa)

8.55

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 3 - 103 3.6e-17 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0029237)

Species Orthologous Gene IDs
pyrus_communis pycom03g13840
rosa_rugosa Rorug05G0463000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AccI GTMKAC 1 cut(s) 249
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 2 cut(s) 81, 162
AluBI AGCT 2 cut(s) 134, 302
AluI AGCT 2 cut(s) 134, 302
ApeKI GCWGC 1 cut(s) 53
AspLEI GCGC 2 cut(s) 53, 229
AsuII TTCGAA 1 cut(s) 19
BbvI GCAGC 1 cut(s) 40
BfaI CTAG 1 cut(s) 170
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 15
BmuI ACTGGG 1 cut(s) 253
Bpu14I TTCGAA 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMI GCAATG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 40
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 21
Bsp119I TTCGAA 1 cut(s) 19
BspT104I TTCGAA 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 35
BstBI TTCGAA 1 cut(s) 19
BstHHI GCGC 2 cut(s) 53, 229
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 40
CfoI GCGC 2 cut(s) 53, 229
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 262
CviAII CATG 2 cut(s) 48, 174
CviJI RGCY 4 cut(s) 134, 140, 167, 302
CviKI_1 RGCY 4 cut(s) 134, 140, 167, 302
CviQI GTAC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 2 cut(s) 51, 177
FaiI YATR 4 cut(s) 49, 175, 194, 225
FaqI GGGAC 1 cut(s) 21
FatI CATG 2 cut(s) 47, 173
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 170
GlaI GCGC 2 cut(s) 52, 228
GluI GCNGC 1 cut(s) 54
HgaI GACGC 1 cut(s) 125
HhaI GCGC 2 cut(s) 53, 229
Hin1II CATG 2 cut(s) 51, 177
Hin6I GCGC 2 cut(s) 51, 227
HinP1I GCGC 2 cut(s) 51, 227
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 26, 49
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
Hsp92II CATG 2 cut(s) 51, 177
HspAI GCGC 2 cut(s) 51, 227
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 3 cut(s) 70, 257, 272
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 170
MfeI CAATTG 1 cut(s) 99
MluCI AATT 2 cut(s) 99, 156
MunI CAATTG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 59
NlaIII CATG 2 cut(s) 51, 177
NspI RCATGY 1 cut(s) 177
NspV TTCGAA 1 cut(s) 19
PfeI GAWTC 1 cut(s) 105
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 1 cut(s) 55
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SalI GTCGAC 1 cut(s) 248
SatI GCNGC 1 cut(s) 54
SetI ASST 2 cut(s) 136, 304
SfaNI GCATC 1 cut(s) 15
SfuI TTCGAA 1 cut(s) 19
Sse9I AATT 2 cut(s) 99, 156
SspMI CTAG 1 cut(s) 170
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 2 cut(s) 19, 249
TasI AATT 2 cut(s) 99, 156
TatI WGTACW 1 cut(s) 261
TfiI GAWTC 1 cut(s) 105
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 211
XceI RCATGY 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.