Rorug05G0463000

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000279
Physical Location & Seq
Reverse (-)
63826477 .. 63828692
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0463000.1

Sequence Viewer

Length: 813 bp
ATGGCTCGTGAGCAGGTGCTACTGCTTTGTCTTCTCCCTCAGTTTTATTTGGCTTTTCCCTTCTGGGTTCAACCTCAAACCTTTTTTTTTCCTGCTCAATTTCAATTATGGGTCTGTTTTTTTCTTATAATTTCTCTGCTTTGTGGGTCAAAGACTCTGGCTTTTCTCATCACATTGGTCAGTCCTGTGATTTCTCTAAGTGCACATGAGGAAGGCTGGCCTCTGGGTTTGCAGCCAATGCATGTGAGAGTTGGGCTGGCTGCTCGAGACCGTGAAGTTTCTGGATCGGTGTCATTCAATACTTTACTAACTGGCTCTCCTACCTCCTCCACAGACTCTTCTTCGGATCTGGATACAGAGTCGACAGGGTCTTTCTTCCATGATAGAAGCATCACACTTGGGAATCTTATAGGAATCAATAGCATTCTAGAGCTATCAAGGAGATCATTAAGAGGAAGAAAGACTGATCAGATCTGTAAGGACAAAAAGAGCAACAACAGCACCAAGTTCAGATTGTGTTGTTTCTCTCTATGCTCAAGGGACAGTACAGATGGTGAGAATGTGAACAGTAATAAAACTCCTCCATCCCTCGGCCATTTCCTTGCAGAAGAGAGAAGAGCTGCCATTGATGAATACAGAAGAAACCCTCAAATTTATGGCCCAGATGATGAGCTTGCCATGGCTCAGCAGGCTGCTACAGAACCCAACTCCCTTTTTGTTAATGGCCAAGTAGCTCCTCCTCCTCAATCTAGTCCATGGTTTGATTCAGATGTTGACAGAAGAAAACCATTGCTATTTTCATGCATGTGTTGA

Protein Analysis

270

Amino Acids

30.11

Weight (kDa)

6.1

Isoelectric Point (pI)

57.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AarI CACCTGC 1 cut(s) 4
Acc36I ACCTGC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 362
AclWI GGATC 2 cut(s) 292, 354
AcoI YGGCCR 2 cut(s) 592, 724
AcsI RAATTY 1 cut(s) 651
AfaI GTAC 1 cut(s) 547
AfiI CCNNNNNNNGG 1 cut(s) 590
AgsI TTSAA 3 cut(s) 71, 104, 298
AluBI AGCT 4 cut(s) 433, 620, 673, 734
AluI AGCT 4 cut(s) 433, 620, 673, 734
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 261
Alw44I GTGCAC 1 cut(s) 201
AlwI GGATC 2 cut(s) 292, 354
Ama87I CYCGRG 1 cut(s) 264
AoxI GGCC 4 cut(s) 218, 592, 658, 724
ApaLI GTGCAC 1 cut(s) 201
ApeKI GCWGC 4 cut(s) 232, 260, 620, 692
ApoI RAATTY 1 cut(s) 651
AspS9I GGNCC 1 cut(s) 659
AsuHPI GGTGA 1 cut(s) 566
AvaI CYCGRG 1 cut(s) 264
BaeGI GKGCMC 1 cut(s) 205
BalI TGGCCA 1 cut(s) 726
BauI CACGAG 1 cut(s) 6
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 4 cut(s) 244, 247, 607, 679
BccI CCATC 2 cut(s) 545, 592
BciVI GTATCC 1 cut(s) 346
BclI TGATCA 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 2 cut(s) 428, 750
BfmI CTRYAG 1 cut(s) 696
BfuAI ACCTGC 1 cut(s) 4
BfuI GTATCC 1 cut(s) 346
BglII AGATCT 1 cut(s) 471
BisI GCNGC 4 cut(s) 233, 261, 621, 693
BlpI GCTNAGC 1 cut(s) 684
BlsI GCNGC 4 cut(s) 234, 262, 622, 694
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 659
BmsI GCATC 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 23
Bpu1102I GCTNAGC 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 520
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 3 cut(s) 589, 678, 755
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 788
BseDI CCNNGG 3 cut(s) 589, 678, 755
BseGI GGATG 1 cut(s) 584
BseLI CCNNNNNNNGG 1 cut(s) 590
BseMI GCAATG 1 cut(s) 788
BseMII CTCAG 2 cut(s) 53, 698
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 5 cut(s) 316, 570, 726, 729, 732
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 4 cut(s) 244, 247, 607, 679
BshFI GGCC 4 cut(s) 220, 594, 660, 726
BsiHKAI GWGCWC 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 1 cut(s) 590
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 554
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 4 cut(s) 220, 594, 660, 726
Bso31I GGTCTC 1 cut(s) 261
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 5 cut(s) 284, 346, 443, 466, 471
Bsp1720I GCTNAGC 1 cut(s) 684
Bsp19I CCATGG 2 cut(s) 678, 755
BspANI GGCC 4 cut(s) 220, 594, 660, 726
BspCNI CTCAG 2 cut(s) 52, 697
BspMI ACCTGC 1 cut(s) 4
BspPI GGATC 2 cut(s) 292, 354
BspQI GCTCTTC 1 cut(s) 610
BspTNI GGTCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 788
BsrI ACTGG 1 cut(s) 316
BssECI CCNNGG 3 cut(s) 589, 678, 755
BssMI GATC 5 cut(s) 284, 346, 443, 466, 471
BssSI CACGAG 1 cut(s) 6
BssT1I CCWWGG 2 cut(s) 678, 755
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 3 cut(s) 272, 545, 569
Bst6I CTCTTC 3 cut(s) 343, 603, 610
BstAPI GCANNNNNTGC 1 cut(s) 238
BstC8I GCNNGC 4 cut(s) 218, 258, 675, 690
BstDEI CTNAG 3 cut(s) 39, 197, 684
BstDSI CCRYGG 2 cut(s) 678, 755
BstF5I GGATG 1 cut(s) 584
BstKTI GATC 5 cut(s) 287, 349, 446, 469, 474
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 5 cut(s) 284, 346, 443, 466, 471
BstMWI GCNNNNNNNGC 3 cut(s) 238, 498, 689
BstNSI RCATGY 2 cut(s) 245, 808
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 4 cut(s) 244, 247, 607, 679
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 2 cut(s) 346, 471
BstYI RGATCY 2 cut(s) 346, 471
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 4 cut(s) 220, 594, 660, 726
BtgI CCRYGG 2 cut(s) 678, 755
BtsCI GGATG 1 cut(s) 584
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 4 cut(s) 218, 258, 675, 690
Cfr13I GGNCC 1 cut(s) 659
Csp6I GTAC 1 cut(s) 546
CviAII CATG 7 cut(s) 206, 242, 380, 679, 756, 801, 805
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 3 cut(s) 39, 197, 684
DpnI GATC 5 cut(s) 286, 348, 445, 468, 473
DpnII GATC 5 cut(s) 284, 346, 443, 466, 471
EaeI YGGCCR 2 cut(s) 592, 724
Eam1104I CTCTTC 3 cut(s) 343, 603, 610
EarI CTCTTC 3 cut(s) 343, 603, 610
Eco130I CCWWGG 2 cut(s) 678, 755
Eco31I GGTCTC 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 264
EcoT14I CCWWGG 2 cut(s) 678, 755
EcoT22I ATGCAT 2 cut(s) 243, 806
ErhI CCWWGG 2 cut(s) 678, 755
FaeI CATG 7 cut(s) 209, 245, 383, 682, 759, 804, 808
FaqI GGGAC 1 cut(s) 554
FatI CATG 7 cut(s) 205, 241, 379, 678, 755, 800, 804
FbaI TGATCA 1 cut(s) 466
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 4 cut(s) 233, 261, 621, 693
FokI GGATG 1 cut(s) 571
Fsp4HI GCNGC 4 cut(s) 233, 261, 621, 693
FspBI CTAG 2 cut(s) 428, 750
GluI GCNGC 4 cut(s) 233, 261, 621, 693
HaeIII GGCC 4 cut(s) 220, 594, 660, 726
Hin1II CATG 7 cut(s) 209, 245, 383, 682, 759, 804, 808
HincII GTYRAC 2 cut(s) 363, 775
HindII GTYRAC 2 cut(s) 363, 775
HinfI GANTC 6 cut(s) 154, 335, 359, 403, 414, 764
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 4 cut(s) 203, 363, 565, 775
Hpy188I TCNGA 4 cut(s) 346, 471, 512, 769
Hpy188III TCNNGA 5 cut(s) 8, 266, 282, 350, 428
Hpy8I GTNNAC 4 cut(s) 203, 363, 565, 775
HpyAV CCTTC 2 cut(s) 70, 206
HpyCH4III ACNGT 3 cut(s) 272, 545, 569
HpyCH4V TGCA 5 cut(s) 203, 232, 241, 605, 804
HpyF10VI GCNNNNNNNGC 3 cut(s) 238, 498, 689
HpyF3I CTNAG 3 cut(s) 39, 197, 684
Hsp92II CATG 7 cut(s) 209, 245, 383, 682, 759, 804, 808
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 5 cut(s) 284, 346, 443, 466, 471
LguI GCTCTTC 1 cut(s) 610
LmnI GCTCC 1 cut(s) 739
Lsp1109I GCAGC 4 cut(s) 244, 247, 607, 679
LweI GCATC 1 cut(s) 399
MaeI CTAG 2 cut(s) 428, 750
MalI GATC 5 cut(s) 286, 348, 445, 468, 473
MboI GATC 5 cut(s) 284, 346, 443, 466, 471
MboII GAAGA 9 cut(s) 23, 330, 333, 367, 468, 620, 627, 651, 792
MflI RGATCY 2 cut(s) 346, 471
MhlI GDGCHC 1 cut(s) 205
MlsI TGGCCA 1 cut(s) 726
MluCI AATT 4 cut(s) 98, 104, 129, 651
MluNI TGGCCA 1 cut(s) 726
MlyI GAGTC 3 cut(s) 148, 329, 368
Mox20I TGGCCA 1 cut(s) 726
Mph1103I ATGCAT 2 cut(s) 243, 806
MscI TGGCCA 1 cut(s) 726
MseI TTAA 2 cut(s) 449, 720
MslI CAYNNNNRTG 1 cut(s) 805
Msp20I TGGCCA 1 cut(s) 726
Mva1269I GAATGC 1 cut(s) 423
MwoI GCNNNNNNNGC 3 cut(s) 238, 498, 689
NcoI CCATGG 2 cut(s) 678, 755
NdeII GATC 5 cut(s) 284, 346, 443, 466, 471
NlaIII CATG 7 cut(s) 209, 245, 383, 682, 759, 804, 808
NmeAIII GCCGAG 1 cut(s) 570
NsiI ATGCAT 2 cut(s) 243, 806
NspI RCATGY 2 cut(s) 245, 808
PaeR7I CTCGAG 1 cut(s) 264
PaqCI CACCTGC 1 cut(s) 4
PciSI GCTCTTC 1 cut(s) 610
PctI GAATGC 1 cut(s) 423
PfeI GAWTC 3 cut(s) 403, 414, 764
PflFI GACNNNGTC 1 cut(s) 367
PkrI GCNGC 4 cut(s) 234, 262, 622, 694
PleI GAGTC 3 cut(s) 148, 329, 367
PpsI GAGTC 3 cut(s) 148, 329, 367
PsiI TTATAA 1 cut(s) 128
PspPI GGNCC 1 cut(s) 659
PsuI RGATCY 2 cut(s) 346, 471
PsyI GACNNNGTC 1 cut(s) 367
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
RseI CAYNNNNRTG 1 cut(s) 805
SalI GTCGAC 1 cut(s) 361
SapI GCTCTTC 1 cut(s) 610
SaqAI TTAA 2 cut(s) 449, 720
SatI GCNGC 4 cut(s) 233, 261, 621, 693
Sau3AI GATC 5 cut(s) 284, 346, 443, 466, 471
Sau96I GGNCC 1 cut(s) 659
SchI GAGTC 3 cut(s) 148, 329, 368
SduI GDGCHC 1 cut(s) 205
SetI ASST 8 cut(s) 18, 76, 83, 326, 435, 622, 675, 736
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 696
Sfr274I CTCGAG 1 cut(s) 264
SlaI CTCGAG 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 805
SmlI CTYRAG 2 cut(s) 264, 535
SmoI CTYRAG 2 cut(s) 264, 535
Sse9I AATT 4 cut(s) 98, 104, 129, 651
SspMI CTAG 2 cut(s) 428, 750
StyI CCWWGG 2 cut(s) 678, 755
TaaI ACNGT 3 cut(s) 272, 545, 569
TaqI TCGA 2 cut(s) 265, 362
TasI AATT 4 cut(s) 98, 104, 129, 651
TatI WGTACW 1 cut(s) 545
TfiI GAWTC 3 cut(s) 403, 414, 764
Tru1I TTAA 2 cut(s) 449, 720
Tru9I TTAA 2 cut(s) 449, 720
TseI GCWGC 4 cut(s) 232, 260, 620, 692
TspDTI ATGAA 2 cut(s) 645, 789
Tth111I GACNNNGTC 1 cut(s) 367
VneI GTGCAC 1 cut(s) 201
XapI RAATTY 1 cut(s) 651
XbaI TCTAGA 1 cut(s) 427
XceI RCATGY 2 cut(s) 245, 808
XhoI CTCGAG 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 362
XspI CTAG 2 cut(s) 428, 750
Zsp2I ATGCAT 2 cut(s) 243, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.