Rh3BG323900

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000279
Physical Location & Seq
Forward (+)
33539235 .. 33544387
5153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG323900.1

Sequence Viewer

Length: 1959 bp
ATGGTTGCCGAAAAGGTGCAGAGGATCCCCGAGACATTTGGGTCATTGACGAGTTACAAGAAGTCATTCATTCCTCCACTTGTTGAGGAAACTCATGCTGATTTACTATCGAATATGTTGAATCTGTCACATGCACCTACTTGTGAAATTCTGACAATCGAAGATTCAGCTGGACCTCCTGGTGACTTGTTTTACGACGTAACATATCAGAGAGATACAGAAACTGATGAGAATCACAAAGGACTGATGTATGAACCACAGGTTGGAGATATCATTGCCTTGACTAATGTTAGACCAAAATGCATTGATGATTTGAACAGGCCTCCAAGGTTCTATCTAATCGCTTATGTTCATAAAGCAAATGATATTGATGAGTTTCCTGATGATCTCCAGTTCAAAATACTATCATCGAAGCCTATCAACTATGGAGAACCAGACATGCATGAGAGCAAGAGAGAAACACTTTTTGCTGTCAATCTTATGAACTTGACAACAAATCTCCGTGTATGGAAGGCTTTGAAATCAGAGGGAAATACAAATATCATTAACAAAGTTCTGCAACCCAAGTCAGATGATGGGGATTCTTGTTCAGTTTGCTTCTCCAAAGAAAAATGCAATGCTGGCATTTCTGCTATATGGCCTACAATTTGCTCTCAAAATCTAAATGAATCCCAAGAAGCTGCAGTTTTGAACTGTATCAGTTTGATTCAATGCCGTCACCAGAATTCCGTAAAATTAATATGGGGTCCTCCTGGTACTGGCAAGACGAAGACAATGAGTCTGACACTCTTTGCTCTCTTTCAGTTAAAGTGCAGAACTCTCACATGTACTCCCACCAATATTGCGGTGCTAGAAGTAGCAGCAAGACTCCGGAGATTGGTTAACCAGTCACTCGAGTATGGCAGGTATGGACTAGGAGATATAGTTCTCTTTGGTAACAAGAAGCGAATGAAGATTGACAATAATGATGATCTTCGTGATATATTTCTTGATCATCGTGTTAAAATTCTCATCAAGTGTTTGGTCCCTTTATCTGGGTGGAAACATTTGTTAGAATCAATGATACATTTACTTGATGATCCTGAGGAACAATATTCTTTGTATTTGGAAAAGAGAGCTGAAAAGCAGAAACAGAATGCACAAAAAAATGAGGAGGATAATCGAAAACATAATGGAGATGAGGATTATCCTTTGACATATGAGGAGTTTGTAAAGAATGAATTTGATTCAATCAGTCAGGAGCTAAAGATTTGTATGGTTTGCTTCACTGATGACTTCCGGAACTCCATAACTAAAATTAAAGACACTGTGATTCTTCGGGAAGTACTCGCGTTATTAACCAAGCTTTCGAGTGGATGGCGCCGACCTCACAAGGATAAAGGAAATTTAGTGTATGATGGGACTTCTGCTCAACTGTTAGAAAAGTATAAAATCAAAGGGCGCTTGAATCTCATTTGGACTGTAGATATTCTCCAGGAGAATGCACATTACGTCCAAGTTATGAAGTTTTGGGATATTTTGCCATTTTCTCATATACCAGAACTAGCAAAGCGTCTTGACATTGTTTTCGGAAATTTTACAGTGGATAAGATGAACCGCTGCAGGCACAAATGCATTGACAGGGATACTGTTGTTCCAATGAGATGGCCAGTGGTTTTCAGAAATTTTCCTATAGTTGATCATGAGGAGTTCCTTTCAAAACCATTGTCTTCTTTCAGCATAACAACTAATCGAGAAACAGCAACTTCAACATATGGGGAGACAGCAAAAGCAGTAACACCGATTATCCGTCCGAAAAGCAATGTCAATAAAAAAGAAGGATGGTTATGGAAAATAAAGGCTGAAGACAAAGTGAAGGATTTCAGCACTGAAGCTGACCCTGTGGAGTTCTTTTCAAAACCATTATCATCACTAAATCTAGCAGATAAGCCAGAAGCATCTACTTCCGCTGACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

652

Amino Acids

74.64

Weight (kDa)

6.47

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 46 - 178 2.1e-13 Domain of unknown function (DUF6469)
AAA_11 PF13086 220 - 388 3.3e-14 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 894
AccB1I GGYRCC 1 cut(s) 1359
AccB7I CCANNNNNTGG 1 cut(s) 263
AccII CGCG 1 cut(s) 1331
AccIII TCCGGA 2 cut(s) 870, 1278
AciI CCGC 3 cut(s) 845, 1597, 1947
AclWI GGATC 3 cut(s) 19, 32, 1073
AcoI YGGCCR 1 cut(s) 1646
AcsI RAATTY 7 cut(s) 147, 724, 1005, 1220, 1384, 1573, 1663
AcuI CTGAAG 2 cut(s) 1863, 1890
AcyI GRCGYC 1 cut(s) 1360
AfaI GTAC 3 cut(s) 757, 829, 1326
AfiI CCNNNNNNNGG 4 cut(s) 263, 758, 877, 1034
AflIII ACRYGT 2 cut(s) 824, 1953
AhdI GACNNNNNGTC 1 cut(s) 777
AjnI CCWGG 3 cut(s) 178, 751, 1473
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AloI GAACNNNNNNTCC 2 cut(s) 909, 941
AluBI AGCT 6 cut(s) 170, 680, 1118, 1243, 1345, 1874
AluI AGCT 6 cut(s) 170, 680, 1118, 1243, 1345, 1874
Alw26I GTCTC 2 cut(s) 26, 1754
AlwI GGATC 3 cut(s) 19, 32, 1073
AlwNI CAGNNNCTG 1 cut(s) 224
Ama87I CYCGRG 2 cut(s) 29, 893
Aor13HI TCCGGA 2 cut(s) 870, 1278
AoxI GGCC 3 cut(s) 320, 638, 1646
ApeKI GCWGC 3 cut(s) 680, 860, 1599
ApoI RAATTY 7 cut(s) 147, 724, 1005, 1220, 1384, 1573, 1663
ArsI GACNNNNNNTTYG 4 cut(s) 1550, 1582, 1691, 1723
AseI ATTAAT 1 cut(s) 737
Asp700I GAANNNNTTC 2 cut(s) 65, 1859
AspLEI GCGC 2 cut(s) 1362, 1443
AspS9I GGNCC 3 cut(s) 173, 746, 1024
AsuHPI GGTGA 2 cut(s) 194, 710
AvaI CYCGRG 2 cut(s) 29, 893
AvaII GGWCC 3 cut(s) 173, 746, 1024
AxyI CCTNAGG 1 cut(s) 1083
BaeI ACNNNNGTAYC 2 cut(s) 1617, 1650
BalI TGGCCA 1 cut(s) 1648
BamHI GGATCC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 1359
BbsI GAAGAC 3 cut(s) 776, 1701, 1851
BbvI GCAGC 3 cut(s) 667, 872, 1586
BccI CCATC 5 cut(s) 569, 1350, 1391, 1638, 1815
BceAI ACGGC 1 cut(s) 699
BciT130I CCWGG 3 cut(s) 180, 753, 1475
BciVI GTATCC 1 cut(s) 1618
BclI TGATCA 2 cut(s) 991, 1678
BcoDI GTCTC 2 cut(s) 26, 1754
BfaI CTAG 4 cut(s) 851, 914, 1544, 1919
BfmI CTRYAG 4 cut(s) 681, 1461, 1600, 1671
BfoI RGCGCY 2 cut(s) 1363, 1444
BfuAI ACCTGC 1 cut(s) 894
BfuI GTATCC 1 cut(s) 1618
BisI GCNGC 3 cut(s) 681, 861, 1600
BlsI GCNGC 3 cut(s) 682, 862, 1601
BmcAI AGTACT 1 cut(s) 1326
Bme1390I CCNGG 3 cut(s) 180, 753, 1475
Bme18I GGWCC 3 cut(s) 173, 746, 1024
BmeRI GACNNNNNGTC 1 cut(s) 777
BmeT110I CYCGRG 2 cut(s) 29, 893
BmgT120I GGNCC 3 cut(s) 173, 746, 1024
BmiI GGNNCC 4 cut(s) 26, 747, 1026, 1361
BmrFI CCNGG 3 cut(s) 180, 753, 1475
BmsI GCATC 1 cut(s) 1946
BpiI GAAGAC 3 cut(s) 776, 1701, 1851
BpmI CTGGAG 2 cut(s) 374, 1457
BsaBI GATNNNNATC 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 1360
BsaJI CCNNGG 1 cut(s) 326
BsaWI WCCGGW 2 cut(s) 870, 1278
BsaXI ACNNNNNCTCC 4 cut(s) 814, 844, 909, 939
Bsc4I CCNNNNNNNGG 4 cut(s) 263, 758, 877, 1034
Bse1I ACTGG 4 cut(s) 391, 763, 886, 1649
Bse21I CCTNAGG 1 cut(s) 1083
Bse3DI GCAATG 3 cut(s) 273, 622, 1807
Bse8I GATNNNNATC 1 cut(s) 231
BseAI TCCGGA 2 cut(s) 870, 1278
BseBI CCWGG 3 cut(s) 180, 753, 1475
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 2 cut(s) 1361, 1826
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 4 cut(s) 263, 758, 877, 1034
BseMI GCAATG 3 cut(s) 273, 622, 1807
BseMII CTCAG 1 cut(s) 1074
BseNI ACTGG 4 cut(s) 391, 763, 886, 1649
BseRI GAGGAG 3 cut(s) 1166, 1217, 1700
BseXI GCAGC 3 cut(s) 667, 872, 1586
BsgI GTGCAG 2 cut(s) 38, 832
Bsh1236I CGCG 1 cut(s) 1331
BshFI GGCC 3 cut(s) 322, 640, 1648
BshNI GGYRCC 1 cut(s) 1359
BsiHKCI CYCGRG 2 cut(s) 29, 893
BsiSI CCGG 2 cut(s) 871, 1279
BslFI GGGAC 2 cut(s) 1010, 1414
BslI CCNNNNNNNGG 4 cut(s) 263, 758, 877, 1034
BsmAI GTCTC 2 cut(s) 26, 1754
BsmFI GGGAC 2 cut(s) 1010, 1414
BsmI GAATGC 2 cut(s) 1141, 1486
BsnI GGCC 3 cut(s) 322, 640, 1648
BsoBI CYCGRG 2 cut(s) 29, 893
Bsp13I TCCGGA 2 cut(s) 870, 1278
Bsp143I GATC 6 cut(s) 24, 385, 970, 991, 1078, 1678
BspACI CCGC 3 cut(s) 845, 1597, 1947
BspANI GGCC 3 cut(s) 322, 640, 1648
BspCNI CTCAG 1 cut(s) 1075
BspEI TCCGGA 2 cut(s) 870, 1278
BspFNI CGCG 1 cut(s) 1331
BspHI TCATGA 1 cut(s) 1681
BspLI GGNNCC 4 cut(s) 26, 747, 1026, 1361
BspMAI CTGCAG 2 cut(s) 685, 1604
BspMI ACCTGC 1 cut(s) 894
BspPI GGATC 3 cut(s) 19, 32, 1073
BspT107I GGYRCC 1 cut(s) 1359
BsrDI GCAATG 3 cut(s) 273, 622, 1807
BsrI ACTGG 4 cut(s) 391, 763, 886, 1649
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 6 cut(s) 24, 385, 970, 991, 1078, 1678
BssNI GRCGYC 1 cut(s) 1360
BssT1I CCWWGG 1 cut(s) 326
Bst2UI CCWGG 3 cut(s) 180, 753, 1475
Bst4CI ACNGT 6 cut(s) 695, 1309, 1416, 1462, 1582, 1630
BstACI GRCGYC 1 cut(s) 1360
BstC8I GCNNGC 2 cut(s) 622, 1604
BstDEI CTNAG 1 cut(s) 1083
BstF5I GGATG 2 cut(s) 1361, 1826
BstFNI CGCG 1 cut(s) 1331
BstH2I RGCGCY 2 cut(s) 1363, 1444
BstHHI GCGC 2 cut(s) 1362, 1443
BstKTI GATC 6 cut(s) 27, 388, 973, 994, 1081, 1681
BstMAI GTCTC 2 cut(s) 26, 1754
BstMBI GATC 6 cut(s) 24, 385, 970, 991, 1078, 1678
BstMWI GCNNNNNNNGC 1 cut(s) 621
BstNI CCWGG 3 cut(s) 180, 753, 1475
BstNSI RCATGY 4 cut(s) 134, 442, 828, 1957
BstSCI CCNGG 3 cut(s) 178, 751, 1473
BstSFI CTRYAG 4 cut(s) 681, 1461, 1600, 1671
BstUI CGCG 1 cut(s) 1331
BstV1I GCAGC 3 cut(s) 667, 872, 1586
BstV2I GAAGAC 3 cut(s) 776, 1701, 1851
BstX2I RGATCY 1 cut(s) 24
BstXI CCANNNNNNTGG 1 cut(s) 1644
BstYI RGATCY 1 cut(s) 24
Bsu36I CCTNAGG 1 cut(s) 1083
BsuI GTATCC 1 cut(s) 1618
BsuRI GGCC 3 cut(s) 322, 640, 1648
BtsCI GGATG 2 cut(s) 1361, 1826
BtsIMutI CAGTG 5 cut(s) 1266, 1305, 1587, 1656, 1866
BveI ACCTGC 1 cut(s) 894
Cac8I GCNNGC 2 cut(s) 622, 1604
CaiI CAGNNNCTG 1 cut(s) 224
CciI TCATGA 1 cut(s) 1681
CfoI GCGC 2 cut(s) 1362, 1443
Cfr13I GGNCC 3 cut(s) 173, 746, 1024
CseI GACGC 1 cut(s) 1541
Csp6I GTAC 3 cut(s) 756, 828, 1325
CspCI CAANNNNNGTGG 2 cut(s) 823, 858
CviAII CATG 7 cut(s) 95, 131, 439, 443, 825, 1682, 1954
CviQI GTAC 3 cut(s) 756, 828, 1325
DdeI CTNAG 1 cut(s) 1083
DinI GGCGCC 1 cut(s) 1361
DpnI GATC 6 cut(s) 26, 387, 972, 993, 1080, 1680
DpnII GATC 6 cut(s) 24, 385, 970, 991, 1078, 1678
DrdI GACNNNNNNGTC 1 cut(s) 40
DriI GACNNNNNGTC 1 cut(s) 777
DseDI GACNNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 1646
Eam1105I GACNNNNNGTC 1 cut(s) 777
Eco130I CCWWGG 1 cut(s) 326
Eco147I AGGCCT 1 cut(s) 322
Eco32I GATATC 1 cut(s) 271
Eco47I GGWCC 3 cut(s) 173, 746, 1024
Eco57I CTGAAG 2 cut(s) 1863, 1890
Eco81I CCTNAGG 1 cut(s) 1083
Eco88I CYCGRG 2 cut(s) 29, 893
EcoO109I RGGNCCY 1 cut(s) 746
EcoRI GAATTC 1 cut(s) 724
EcoRII CCWGG 3 cut(s) 178, 751, 1473
EcoRV GATATC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 326
EcoT22I ATGCAT 3 cut(s) 305, 444, 1616
EgeI GGCGCC 1 cut(s) 1361
EheI GGCGCC 1 cut(s) 1361
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 7 cut(s) 98, 134, 442, 446, 828, 1685, 1957
FaqI GGGAC 2 cut(s) 1010, 1414
FatI CATG 7 cut(s) 94, 130, 438, 442, 824, 1681, 1953
FauNDI CATATG 2 cut(s) 1198, 1753
FbaI TGATCA 2 cut(s) 991, 1678
Fnu4HI GCNGC 3 cut(s) 681, 861, 1600
FokI GGATG 2 cut(s) 1368, 1833
Fsp4HI GCNGC 3 cut(s) 681, 861, 1600
FspBI CTAG 4 cut(s) 851, 914, 1544, 1919
GlaI GCGC 2 cut(s) 1361, 1442
GluI GCNGC 3 cut(s) 681, 861, 1600
GsuI CTGGAG 2 cut(s) 374, 1457
HaeII RGCGCY 2 cut(s) 1363, 1444
HaeIII GGCC 3 cut(s) 322, 640, 1648
HapII CCGG 2 cut(s) 871, 1279
HgaI GACGC 1 cut(s) 1541
HhaI GCGC 2 cut(s) 1362, 1443
Hin1I GRCGYC 1 cut(s) 1360
Hin1II CATG 7 cut(s) 98, 134, 442, 446, 828, 1685, 1957
Hin6I GCGC 2 cut(s) 1360, 1441
HinP1I GCGC 2 cut(s) 1360, 1441
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HindIII AAGCTT 1 cut(s) 1343
HpaI GTTAAC 1 cut(s) 883
HpaII CCGG 2 cut(s) 871, 1279
HphI GGTGA 2 cut(s) 194, 710
Hpy166II GTNNAC 1 cut(s) 883
Hpy188I TCNGA 8 cut(s) 153, 210, 526, 571, 783, 1571, 1661, 1794
Hpy8I GTNNAC 1 cut(s) 883
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 3 cut(s) 505, 1811, 1849
HpyCH4III ACNGT 6 cut(s) 695, 1309, 1416, 1462, 1582, 1630
HpyCH4IV ACGT 2 cut(s) 198, 1491
HpyF10VI GCNNNNNNNGC 1 cut(s) 621
HpyF3I CTNAG 1 cut(s) 1083
HpySE526I ACGT 2 cut(s) 198, 1491
Hsp92I GRCGYC 1 cut(s) 1360
Hsp92II CATG 7 cut(s) 98, 134, 442, 446, 828, 1685, 1957
HspAI GCGC 2 cut(s) 1360, 1441
KasI GGCGCC 1 cut(s) 1359
Kpn2I TCCGGA 2 cut(s) 870, 1278
Ksp22I TGATCA 2 cut(s) 991, 1678
KspAI GTTAAC 1 cut(s) 883
Kzo9I GATC 6 cut(s) 24, 385, 970, 991, 1078, 1678
LmnI GCTCC 1 cut(s) 1240
Lsp1109I GCAGC 3 cut(s) 667, 872, 1586
LweI GCATC 1 cut(s) 1946
MaeI CTAG 4 cut(s) 851, 914, 1544, 1919
MaeII ACGT 2 cut(s) 198, 1491
MaeIII GTNAC 8 cut(s) 53, 126, 182, 199, 716, 888, 935, 1774
MalI GATC 6 cut(s) 26, 387, 972, 993, 1080, 1680
MboI GATC 6 cut(s) 24, 385, 970, 991, 1078, 1678
MboII GAAGA 7 cut(s) 173, 781, 964, 965, 1307, 1701, 1856
MflI RGATCY 1 cut(s) 24
MlsI TGGCCA 1 cut(s) 1648
MluNI TGGCCA 1 cut(s) 1648
Mly113I GGCGCC 1 cut(s) 1360
MlyI GAGTC 2 cut(s) 787, 861
MmeI TCCRAC 1 cut(s) 244
Mox20I TGGCCA 1 cut(s) 1648
Mph1103I ATGCAT 3 cut(s) 305, 444, 1616
MroI TCCGGA 2 cut(s) 870, 1278
MroXI GAANNNNTTC 2 cut(s) 65, 1859
MscI TGGCCA 1 cut(s) 1648
MseI TTAA 7 cut(s) 546, 737, 806, 882, 1002, 1299, 1337
Msp20I TGGCCA 1 cut(s) 1648
MspA1I CMGCKG 3 cut(s) 170, 1599, 1949
MspI CCGG 2 cut(s) 871, 1279
MspR9I CCNGG 3 cut(s) 180, 753, 1475
Mva1269I GAATGC 2 cut(s) 1141, 1486
MvaI CCWGG 3 cut(s) 180, 753, 1475
MvnI CGCG 1 cut(s) 1331
MwoI GCNNNNNNNGC 1 cut(s) 621
NarI GGCGCC 1 cut(s) 1360
NdeI CATATG 2 cut(s) 1198, 1753
NdeII GATC 6 cut(s) 24, 385, 970, 991, 1078, 1678
NlaIII CATG 7 cut(s) 98, 134, 442, 446, 828, 1685, 1957
NlaIV GGNNCC 4 cut(s) 26, 747, 1026, 1361
NmuCI GTSAC 4 cut(s) 126, 182, 716, 888
NsiI ATGCAT 3 cut(s) 305, 444, 1616
NspI RCATGY 4 cut(s) 134, 442, 828, 1957
PaeR7I CTCGAG 1 cut(s) 893
PagI TCATGA 1 cut(s) 1681
PceI AGGCCT 1 cut(s) 322
PciI ACATGT 2 cut(s) 824, 1953
PctI GAATGC 2 cut(s) 1141, 1486
PdmI GAANNNNTTC 2 cut(s) 65, 1859
PflMI CCANNNNNTGG 1 cut(s) 263
PfoI TCCNGGA 1 cut(s) 1473
PkrI GCNGC 3 cut(s) 682, 862, 1601
PleI GAGTC 2 cut(s) 786, 861
PluTI GGCGCC 1 cut(s) 1363
PpsI GAGTC 2 cut(s) 786, 861
PpuMI RGGWCCY 1 cut(s) 746
PscI ACATGT 2 cut(s) 824, 1953
PshBI ATTAAT 1 cut(s) 737
Psp5II RGGWCCY 1 cut(s) 746
Psp6I CCWGG 3 cut(s) 178, 751, 1473
PspGI CCWGG 3 cut(s) 178, 751, 1473
PspN4I GGNNCC 4 cut(s) 26, 747, 1026, 1361
PspPI GGNCC 3 cut(s) 173, 746, 1024
PspPPI RGGWCCY 1 cut(s) 746
PspXI VCTCGAGB 1 cut(s) 893
PstI CTGCAG 2 cut(s) 685, 1604
PstNI CAGNNNCTG 1 cut(s) 224
PsuI RGATCY 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 3 cut(s) 757, 829, 1326
RsaNI GTAC 3 cut(s) 756, 828, 1325
SaqAI TTAA 7 cut(s) 546, 737, 806, 882, 1002, 1299, 1337
SatI GCNGC 3 cut(s) 681, 861, 1600
Sau3AI GATC 6 cut(s) 24, 385, 970, 991, 1078, 1678
Sau96I GGNCC 3 cut(s) 173, 746, 1024
ScaI AGTACT 1 cut(s) 1326
SchI GAGTC 2 cut(s) 787, 861
ScrFI CCNGG 3 cut(s) 180, 753, 1475
SfaNI GCATC 1 cut(s) 1946
SfcI CTRYAG 4 cut(s) 681, 1461, 1600, 1671
SfoI GGCGCC 1 cut(s) 1361
Sfr274I CTCGAG 1 cut(s) 893
SinI GGWCC 3 cut(s) 173, 746, 1024
SlaI CTCGAG 1 cut(s) 893
SmlI CTYRAG 1 cut(s) 893
SmoI CTYRAG 1 cut(s) 893
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 3 cut(s) 845, 1597, 1947
SspDI GGCGCC 1 cut(s) 1359
SspI AATATT 2 cut(s) 841, 1094
SspMI CTAG 4 cut(s) 851, 914, 1544, 1919
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 3 cut(s) 178, 751, 1473
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 6 cut(s) 695, 1309, 1416, 1462, 1582, 1630
TaiI ACGT 2 cut(s) 201, 1494
TaqI TCGA 7 cut(s) 110, 159, 410, 894, 1162, 1349, 1732
TatI WGTACW 2 cut(s) 827, 1324
Tru1I TTAA 7 cut(s) 546, 737, 806, 882, 1002, 1299, 1337
Tru9I TTAA 7 cut(s) 546, 737, 806, 882, 1002, 1299, 1337
TscAI CASTG 5 cut(s) 1273, 1312, 1587, 1656, 1873
TseFI GTSAC 4 cut(s) 126, 182, 716, 888
TseI GCWGC 3 cut(s) 680, 860, 1599
Tsp45I GTSAC 4 cut(s) 126, 182, 716, 888
TspDTI ATGAA 9 cut(s) 58, 267, 341, 497, 681, 965, 1233, 1517, 1607
TspGWI ACGGA 3 cut(s) 491, 718, 1778
TspRI CASTG 5 cut(s) 1273, 1312, 1587, 1656, 1873
Van91I CCANNNNNTGG 1 cut(s) 263
VpaK11BI GGWCC 3 cut(s) 173, 746, 1024
VspI ATTAAT 1 cut(s) 737
XapI RAATTY 7 cut(s) 147, 724, 1005, 1220, 1384, 1573, 1663
XceI RCATGY 4 cut(s) 134, 442, 828, 1957
XhoI CTCGAG 1 cut(s) 893
XmnI GAANNNNTTC 2 cut(s) 65, 1859
XspI CTAG 4 cut(s) 851, 914, 1544, 1919
ZrmI AGTACT 1 cut(s) 1326
Zsp2I ATGCAT 3 cut(s) 305, 444, 1616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.