Rh6DG116500

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000279
Physical Location & Seq
Forward (+)
15422729 .. 15428725
5997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG116500.1

Sequence Viewer

Length: 1179 bp
ATGGACAAGGAGAGTAGGAAGCCAAAGAAAGATGTTGGAGGTAGGAGCTTGATTGATTTGGTCTTCTCTTGGTCTATTAGAGATGTTCTCAATAAAGATCACTACAAAAACCAGGTAACAACGATTCCTGAGACGTTCTCGACCGTAACGAGTTACATGAAAGCATTTGTTCCTTCACTTCTTGAGGAAACACATGATGAATTACGCTCAAGCATGATGTCCCTGTCGCGGGCACCAACTTGTGAAATTCTAACAGTTGAAACTTCCAAGGATCATAAACCTCCCAAAGACTTGTTTTACCAAATTACATATAAGAGGAGACAAGGAGAAGAATATGTAGGAGCATATGAGCCAGATGTTGGTGATGTCATTGCCTTGACCAATGTGAGACCCAAATACATTGATGATTTGAACAGATCCAGAAATTCTTATCTTATTGCTTATGTTATTGGATCACAACACGGAAGTTCTGATAAGCTTCCGATACTCGCATCAAAGTCTATCAATGGAGGAGGAGAGTCAGGAAACAAAAAGATTAAGAGCAAGAGTGATACACTTTTTGCTGTTTACCTCATGAACATGACAACAAACGTACGTGTATGGAAAGCTCTGAACTCAGAATTAGGCTCAAACACAAATCTGTGTAAGAAGGTTCTGCAAGTTCAACCACCAAATTCATCACATGGTCAGAATTCTTGCACAATTTGTTTTTCCAATTATAACGGCTGCCCTGAGCTTTCTACTAGATGGCCCACAATGTGCTCTGATCTAAATGATTCCCAAGAGGCTGCAGTTTTGAACTGTATCAGTTTGAATTCTGGTGATAGGAGCTCAGCAAGTGATGATGAAAATGATATTCTAACGTTTGAGCAGTTTGTGAAGGAGAGACAGTACTCACTGTATTTGAAAAAGAGAAGGGAAAAATACAATAAAGACAGTGATAATAGGAGCTCATCAAGTGATGATCACAATGGTTTTTTGACACTTGAGGAGTTTGTGAAGGAGAAACAGTATTCACAGTCTTTGAAAAAGGGAAAGGAAAGATGCGACAATGACGGTGAAGATACTGAGAACACAAACTCATCAAGTGATGATGAAACTGATGTTTTGACGTTTGAGGAGTTTGTGAAGGAGAAACAGAATTACATTGGTGAGAATCTGAAGCTGTGTATGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

392

Amino Acids

44.47

Weight (kDa)

5.59

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 89 - 205 6.9e-10 Domain of unknown function (DUF6469)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 720
AccB1I GGYRCC 1 cut(s) 232
AccB7I CCANNNNNTGG 1 cut(s) 359
AccII CGCG 1 cut(s) 229
AciI CCGC 1 cut(s) 229
AclI AACGTT 1 cut(s) 863
AclWI GGATC 3 cut(s) 279, 411, 460
AcsI RAATTY 5 cut(s) 246, 424, 673, 691, 814
AdeI CACNNNGTG 1 cut(s) 759
AfaI GTAC 2 cut(s) 594, 893
AfiI CCNNNNNNNGG 3 cut(s) 228, 229, 359
AflIII ACRYGT 1 cut(s) 595
AgsI TTSAA 7 cut(s) 260, 412, 665, 799, 814, 907, 1027
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 7 cut(s) 48, 478, 608, 736, 831, 951, 1165
AluI AGCT 7 cut(s) 48, 478, 608, 736, 831, 951, 1165
Alw21I GWGCWC 3 cut(s) 764, 833, 953
Alw26I GTCTC 4 cut(s) 125, 313, 382, 880
AlwI GGATC 3 cut(s) 279, 411, 460
AoxI GGCC 1 cut(s) 749
ApeKI GCWGC 2 cut(s) 726, 788
ApoI RAATTY 5 cut(s) 246, 424, 673, 691, 814
AspS9I GGNCC 1 cut(s) 750
AsuHPI GGTGA 4 cut(s) 374, 833, 1070, 1163
BaeGI GKGCMC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 2 cut(s) 833, 953
BbsI GAAGAC 1 cut(s) 55
Bbv12I GWGCWC 3 cut(s) 764, 833, 953
BbvI GCAGC 2 cut(s) 713, 775
BccI CCATC 1 cut(s) 741
BceAI ACGGC 1 cut(s) 739
BciT130I CCWGG 1 cut(s) 113
BclI TGATCA 1 cut(s) 964
BcoDI GTCTC 4 cut(s) 125, 313, 382, 880
BfaI CTAG 1 cut(s) 744
BfmI CTRYAG 1 cut(s) 789
BisI GCNGC 2 cut(s) 727, 789
BlpI GCTNAGC 1 cut(s) 832
BlsI GCNGC 2 cut(s) 728, 790
BmcAI AGTACT 1 cut(s) 893
Bme1390I CCNGG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 750
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 500, 1034
BpiI GAAGAC 1 cut(s) 55
BplI GAGNNNNNCTC 4 cut(s) 72, 104, 122, 154
Bpu10I CCTNAGC 1 cut(s) 732
Bpu1102I GCTNAGC 1 cut(s) 832
BpuEI CTTGAG 3 cut(s) 193, 203, 1007
BsaAI YACGTR 1 cut(s) 596
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 267
BsaXI ACNNNNNCTCC 4 cut(s) 875, 905, 995, 1025
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 229, 359
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 267
BseLI CCNNNNNNNGG 3 cut(s) 228, 229, 359
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 5 cut(s) 120, 630, 723, 846, 1059
BseRI GAGGAG 5 cut(s) 331, 525, 528, 1004, 1133
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 2 cut(s) 713, 775
Bsh1236I CGCG 1 cut(s) 229
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 1 cut(s) 751
BshNI GGYRCC 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 3 cut(s) 764, 833, 953
BsiWI CGTACG 1 cut(s) 592
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 3 cut(s) 228, 229, 359
BsmAI GTCTC 4 cut(s) 125, 313, 382, 880
BsmBI CGTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 1 cut(s) 751
Bso31I GGTCTC 1 cut(s) 382
Bsp1286I GDGCHC 4 cut(s) 235, 764, 833, 953
Bsp143I GATC 6 cut(s) 97, 271, 416, 452, 766, 964
Bsp1720I GCTNAGC 1 cut(s) 832
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 751
BspCNI CTCAG 5 cut(s) 121, 629, 724, 845, 1060
BspFNI CGCG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 1 cut(s) 234
BspMAI CTGCAG 1 cut(s) 793
BspPI GGATC 3 cut(s) 279, 411, 460
BspT107I GGYRCC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 6 cut(s) 97, 271, 416, 452, 766, 964
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 9 cut(s) 145, 256, 803, 891, 900, 938, 1011, 1020, 1058
BstBAI YACGTR 1 cut(s) 596
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 5 cut(s) 129, 616, 732, 832, 1068
BstFNI CGCG 1 cut(s) 229
BstKTI GATC 6 cut(s) 100, 274, 419, 455, 769, 967
BstMAI GTCTC 4 cut(s) 125, 313, 382, 880
BstMBI GATC 6 cut(s) 97, 271, 416, 452, 766, 964
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 1171
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 789
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 713, 775
BstV2I GAAGAC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BsuRI GGCC 1 cut(s) 751
BtsIMutI CAGTG 2 cut(s) 896, 943
Cac8I GCNNGC 1 cut(s) 231
CciI TCATGA 1 cut(s) 573
Cfr13I GGNCC 1 cut(s) 750
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 2 cut(s) 593, 892
CviAII CATG 6 cut(s) 157, 194, 214, 574, 580, 683
CviQI GTAC 2 cut(s) 593, 892
DdeI CTNAG 5 cut(s) 129, 616, 732, 832, 1068
DpnI GATC 6 cut(s) 99, 273, 418, 454, 768, 966
DpnII GATC 6 cut(s) 97, 271, 416, 452, 766, 964
DraIII CACNNNGTG 1 cut(s) 759
Ecl136II GAGCTC 2 cut(s) 831, 951
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 2 cut(s) 833, 953
Eco31I GGTCTC 1 cut(s) 382
Eco53kI GAGCTC 2 cut(s) 831, 951
EcoICRI GAGCTC 2 cut(s) 831, 951
EcoRI GAATTC 2 cut(s) 691, 814
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 267
EcoT38I GRGCYC 2 cut(s) 833, 953
ErhI CCWWGG 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 6 cut(s) 160, 197, 217, 577, 583, 686
FaqI GGGAC 1 cut(s) 205
FatI CATG 6 cut(s) 156, 193, 213, 573, 579, 682
FauI CCCGC 1 cut(s) 222
FauNDI CATATG 1 cut(s) 346
FbaI TGATCA 1 cut(s) 964
Fnu4HI GCNGC 2 cut(s) 727, 789
FriOI GRGCYC 2 cut(s) 833, 953
Fsp4HI GCNGC 2 cut(s) 727, 789
FspBI CTAG 1 cut(s) 744
GluI GCNGC 2 cut(s) 727, 789
HaeIII GGCC 1 cut(s) 751
Hin1II CATG 6 cut(s) 160, 197, 217, 577, 583, 686
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 4 cut(s) 124, 518, 776, 1156
HphI GGTGA 4 cut(s) 374, 833, 1070, 1163
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 8 cut(s) 472, 483, 612, 619, 690, 766, 1161, 1178
Hpy188III TCNNGA 6 cut(s) 128, 139, 182, 420, 522, 574
Hpy8I GTNNAC 1 cut(s) 568
HpyAV CCTTC 6 cut(s) 183, 643, 874, 909, 994, 1123
HpyCH4III ACNGT 9 cut(s) 145, 256, 803, 891, 900, 938, 1011, 1020, 1058
HpyCH4IV ACGT 5 cut(s) 134, 591, 595, 863, 1112
HpyCH4V TGCA 3 cut(s) 658, 699, 791
HpyF10VI GCNNNNNNNGC 1 cut(s) 1171
HpyF3I CTNAG 5 cut(s) 129, 616, 732, 832, 1068
HpySE526I ACGT 5 cut(s) 134, 591, 595, 863, 1112
Hsp92II CATG 6 cut(s) 160, 197, 217, 577, 583, 686
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 6 cut(s) 97, 271, 416, 452, 766, 964
LmnI GCTCC 4 cut(s) 45, 341, 828, 948
LpnPI CCDG 9 cut(s) 98, 125, 141, 236, 366, 433, 507, 744, 804
Lsp1109I GCAGC 2 cut(s) 713, 775
LweI GCATC 2 cut(s) 500, 1034
MabI ACCWGGT 1 cut(s) 111
MaeI CTAG 1 cut(s) 744
MaeII ACGT 5 cut(s) 134, 591, 595, 863, 1112
MaeIII GTNAC 3 cut(s) 115, 145, 152
MalI GATC 6 cut(s) 99, 273, 418, 454, 768, 966
MboI GATC 6 cut(s) 97, 271, 416, 452, 766, 964
MboII GAAGA 3 cut(s) 55, 341, 1073
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 4 cut(s) 235, 764, 833, 953
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 16
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 578
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 1171
NdeI CATATG 1 cut(s) 346
NdeII GATC 6 cut(s) 97, 271, 416, 452, 766, 964
NlaIII CATG 6 cut(s) 160, 197, 217, 577, 583, 686
NlaIV GGNNCC 1 cut(s) 234
PagI TCATGA 1 cut(s) 573
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PfeI GAWTC 3 cut(s) 124, 776, 1156
Pfl23II CGTACG 1 cut(s) 592
PflMI CCANNNNNTGG 1 cut(s) 359
PkrI GCNGC 2 cut(s) 728, 790
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
Ppu21I YACGTR 1 cut(s) 596
PsiI TTATAA 1 cut(s) 720
Psp124BI GAGCTC 2 cut(s) 833, 953
Psp1406I AACGTT 1 cut(s) 863
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspLI CGTACG 1 cut(s) 592
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 750
PstI CTGCAG 1 cut(s) 793
PsuI RGATCY 1 cut(s) 416
RsaI GTAC 2 cut(s) 594, 893
RsaNI GTAC 2 cut(s) 593, 892
RseI CAYNNNNRTG 1 cut(s) 578
SacI GAGCTC 2 cut(s) 833, 953
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 2 cut(s) 727, 789
Sau3AI GATC 6 cut(s) 97, 271, 416, 452, 766, 964
Sau96I GGNCC 1 cut(s) 750
ScaI AGTACT 1 cut(s) 893
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 4 cut(s) 235, 764, 833, 953
SexAI ACCWGGT 1 cut(s) 111
SfaNI GCATC 2 cut(s) 500, 1034
SfcI CTRYAG 1 cut(s) 789
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 3 cut(s) 182, 208, 986
SmoI CTYRAG 3 cut(s) 182, 208, 986
SsiI CCGC 1 cut(s) 229
SspMI CTAG 1 cut(s) 744
SstI GAGCTC 2 cut(s) 833, 953
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 9 cut(s) 145, 256, 803, 891, 900, 938, 1011, 1020, 1058
TaiI ACGT 5 cut(s) 137, 594, 598, 866, 1115
TaqI TCGA 1 cut(s) 140
TatI WGTACW 1 cut(s) 891
TfiI GAWTC 3 cut(s) 124, 776, 1156
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 2 cut(s) 903, 943
TseI GCWGC 2 cut(s) 726, 788
TspDTI ATGAA 6 cut(s) 173, 213, 590, 666, 861, 1110
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 2 cut(s) 903, 943
Van91I CCANNNNNTGG 1 cut(s) 359
XapI RAATTY 5 cut(s) 246, 424, 673, 691, 814
XspI CTAG 1 cut(s) 744
ZrmI AGTACT 1 cut(s) 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.