FvH4_2g08960

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000279
Physical Location & Seq
Forward (+)
7875879 .. 7883491
7613 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08960.t2

Sequence Viewer

Length: 1923 bp
ATGATGTCCTTGTCTCGGGCACCTTCTTGTGAAATTCTGAAAGTTGAACCTTGCAAGGATCATCAACCTCCCAAAGACTTGTTTTACCAAATTACATTTAACGAGAGCAAAGGAGAAAATGATATAGAAGCATATCAGCCAAATGGTGGTGATATCATTGCCTTGTCCGATGTGAGACCAAAATACATTGATGATTTGAGCAGATCCCGAAATTCCTATCTTATTGCTTATGTTATTGGATCAAACCAAGGAAGTTCGCTTAAAATACTGGCATCGAAGTCAATCAATGGAGGAGCGTCAGGAATCAGACAGAGTAAGCGTGGTAGACTAGTTGCAGTTTACCTCATGAACATGACCACAAACATACGTGTGTGGAATGCTCTGAACTCAGAATTAAGTGCAAATACAAATCTTCTTAAAAATGTTCTGCAAGTGCAACCAGCAAATTCATTACAGGGTCAGAATTCTTGCACAATTTGTTTTTCCAAAGAAAACTGCTGCCCTGCGATTTCTGCTAGATGGCCTAGAATGTGTTCTGATTTAAATAGTTCCCAACAGGCTGCAGTTTTGAACTGTATCAGTTTGAGCAGGTGCCATCACAACAATACAGTCGAGCTACTATGGGGTCCTCCAGGGACTGGAAAAACAAAGACAGTTGGTCTGTCACTCTTTGCTCTTTTTCAGTTAAAGTGCAGAACTCTAACATGCGCTCCCACCAATATTGCTGTCTTAGAAGTGACATCACGGCTGCTGAGATTGGTTAAACAGTCATTGGAATATGGCAAGTATGGACTTGGAGATATCATTCTATTTGGGAGTAGGGGGAGATTGAAGATTGATAGTAATGATGACCTTCAAGAGGAGATACAGTACTCACTGTATTTAAAAAAGAGAAGGGAAAAATACAATGGGGATAGTACAAACTCATCGAGCGATGATCACAATGGTGAATTGACGTTTGAGGAGTTTGGGAAGGAAAAAGAGTTACCACTGCATTTGAAAAAGGGATGGGAAAGATGCCACGATGATGGTAAAGATAGTAATAGTACGAACTCATCAAGTGATGATGACATTGATGTTTTGACGTTTGAGAAGTTTCTGAAGGACAAACATAATTACATTGGTGAGAATCTGAAGCTGTGTATGGAAAATATGTACACTCACTTGCCAACTTCTTGCATTTCATTAGATGTGGTGAAGGACATGATTAGAGCTATTGAATTTCTCAAGTCAATTAAATCTTTAGTATCTCAGGGGCTTGACATTGCTAGTGAAAGGTTTGAATTGATCGTGGACAATTGCGTTAATATTCTGAGGTCACTTCGTGTCTTTTCTGTTCCAACTTCTAATGGTGGCCAGACAATAAGGAAGTTGTGTTTGGAAAATGTGTGCTTAATATTTTGTACTGCATCAACCTCAGCAAAACTGCACACGGAAGGAATCAAACCACTTGAACTGTTGGTCATTGATGAAGCTGCTCAGCTTAAAGAATGTGAATCGGCAATCCCTTTACAACTACCTGGCCTTCGACATGCTATTCTCATAGGAGATGAAAGGCAACTTCCTGCTATGGTTAAAAGCAAGATCGCAGAGAAAGCTGGTTTCGGGAGAAGCTTGTTCGAAAGACTAGTCCTGTTGGGACATGAGAAGCACCTTCTCAATGTCCAGTATAGGATGCATCCGTCAATCAGCTTATTTCCGAAAAAAGAGTTTTACGATAATAGGATATTGGATGGTCCAAATGTCAACGCAGTAAGCTATGAGAAATGCTTCCTTGAGGGAAGAATGTTTGGATCCTACTCCTTCATACATATAGCCGACGGAAAAGAAGAATTTTATCGTGGACACAGTTCGAGAAATATGGTTGAGGTTGCTGTGGTCTATCATATAGTTCTTGGCCTTTACAAACGTTGGCTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

641

Amino Acids

71.86

Weight (kDa)

8.25

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 38 - 129 6.3e-09 Domain of unknown function (DUF6469)
AAA_11 PF13086 181 - 257 1.6e-11 AAA domain
AAA_11 PF13086 452 - 528 1.6e-16 AAA domain
AAA_12 PF13087 536 - 638 1.4e-18 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 579
Acc36I ACCTGC 1 cut(s) 579
AccB1I GGYRCC 2 cut(s) 19, 591
AccB7I CCANNNNNTGG 2 cut(s) 146, 638
AccI GTMKAC 1 cut(s) 325
AclI AACGTT 1 cut(s) 1909
AclWI GGATC 5 cut(s) 66, 198, 247, 1788, 1801
AcoI YGGCCR 1 cut(s) 1354
AcsI RAATTY 6 cut(s) 33, 211, 445, 463, 1220, 1832
AcuI CTGAAG 2 cut(s) 1121, 1154
AdeI CACNNNGTG 1 cut(s) 1325
AfaI GTAC 5 cut(s) 872, 919, 1048, 1157, 1405
AfiI CCNNNNNNNGG 4 cut(s) 15, 146, 638, 859
AflIII ACRYGT 1 cut(s) 367
AgsI TTSAA 8 cut(s) 47, 571, 832, 857, 1000, 1220, 1283, 1454
AhdI GACNNNNNGTC 1 cut(s) 657
AhlI ACTAGT 2 cut(s) 328, 1627
AjnI CCWGG 2 cut(s) 631, 1519
AjuI GAANNNNNNNTTGG 2 cut(s) 1361, 1393
AleI CACNNNNGTG 1 cut(s) 945
AluBI AGCT 9 cut(s) 616, 1138, 1214, 1475, 1483, 1598, 1614, 1692, 1758
AluI AGCT 9 cut(s) 616, 1138, 1214, 1475, 1483, 1598, 1614, 1692, 1758
Alw26I GTCTC 2 cut(s) 18, 169
AlwI GGATC 5 cut(s) 66, 198, 247, 1788, 1801
AlwNI CAGNNNCTG 1 cut(s) 638
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 4 cut(s) 521, 1354, 1522, 1897
ApeKI GCWGC 5 cut(s) 498, 560, 748, 1475, 1915
ApoI RAATTY 6 cut(s) 33, 211, 445, 463, 1220, 1832
ArsI GACNNNNNNTTYG 2 cut(s) 1614, 1646
Asp700I GAANNNNTTC 2 cut(s) 532, 1769
AspLEI GCGC 1 cut(s) 710
AspS9I GGNCC 2 cut(s) 626, 1736
AsuHPI GGTGA 4 cut(s) 161, 959, 1136, 1207
AsuII TTCGAA 1 cut(s) 1620
AvaI CYCGRG 1 cut(s) 15
AvaII GGWCC 2 cut(s) 626, 1736
BaeGI GKGCMC 1 cut(s) 22
BalI TGGCCA 1 cut(s) 1356
BamHI GGATCC 1 cut(s) 1793
BanI GGYRCC 2 cut(s) 19, 591
BbvCI CCTCAGC 1 cut(s) 1417
BbvI GCAGC 5 cut(s) 485, 547, 735, 1462, 1902
BccI CCATC 5 cut(s) 513, 603, 1002, 1022, 1727
BceAI ACGGC 1 cut(s) 761
BciT130I CCWGG 2 cut(s) 633, 1521
BclI TGATCA 1 cut(s) 937
BcoDI GTCTC 2 cut(s) 18, 169
BcuI ACTAGT 2 cut(s) 328, 1627
BfaI CTAG 5 cut(s) 329, 516, 525, 1269, 1628
BfmI CTRYAG 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 579
BisI GCNGC 5 cut(s) 499, 561, 749, 1476, 1916
BlpI GCTNAGC 1 cut(s) 1479
BlsI GCNGC 5 cut(s) 500, 562, 750, 1477, 1917
BmcAI AGTACT 1 cut(s) 872
Bme1390I CCNGG 2 cut(s) 633, 1521
Bme18I GGWCC 2 cut(s) 626, 1736
BmeRI GACNNNNNGTC 1 cut(s) 657
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 626, 1736
BmiI GGNNCC 4 cut(s) 21, 593, 627, 1795
BmrFI CCNGG 2 cut(s) 633, 1521
BmsI GCATC 5 cut(s) 281, 1007, 1418, 1665, 1687
BpmI CTGGAG 1 cut(s) 615
Bpu10I CCTNAGC 1 cut(s) 1417
Bpu1102I GCTNAGC 1 cut(s) 1479
Bpu14I TTCGAA 1 cut(s) 1620
BpuEI CTTGAG 2 cut(s) 1211, 1796
BsaAI YACGTR 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 247, 632
BsaXI ACNNNNNCTCC 4 cut(s) 694, 724, 854, 884
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 146, 638, 859
Bse1I ACTGG 3 cut(s) 273, 643, 1666
Bse3DI GCAATG 2 cut(s) 156, 1263
BseBI CCWGG 2 cut(s) 633, 1521
BseDI CCNNGG 2 cut(s) 247, 632
BseGI GGATG 4 cut(s) 1013, 1678, 1680, 1738
BseLI CCNNNNNNNGG 4 cut(s) 15, 146, 638, 859
BseMI GCAATG 2 cut(s) 156, 1263
BseMII CTCAG 6 cut(s) 402, 743, 1265, 1304, 1431, 1493
BseNI ACTGG 3 cut(s) 273, 643, 1666
BseRI GAGGAG 3 cut(s) 306, 875, 977
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 5 cut(s) 485, 547, 735, 1462, 1902
BsgI GTGCAG 2 cut(s) 712, 1412
BshFI GGCC 4 cut(s) 523, 1356, 1524, 1899
BshNI GGYRCC 2 cut(s) 19, 591
BsiHKCI CYCGRG 1 cut(s) 15
BslFI GGGAC 2 cut(s) 649, 1653
BslI CCNNNNNNNGG 4 cut(s) 15, 146, 638, 859
BsmAI GTCTC 2 cut(s) 18, 169
BsmFI GGGAC 2 cut(s) 649, 1653
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 4 cut(s) 523, 1356, 1524, 1899
Bso31I GGTCTC 1 cut(s) 169
BsoBI CYCGRG 1 cut(s) 15
Bsp119I TTCGAA 1 cut(s) 1620
Bsp1286I GDGCHC 1 cut(s) 22
Bsp1407I TGTACA 1 cut(s) 1155
Bsp143I GATC 7 cut(s) 58, 203, 239, 937, 1287, 1584, 1793
Bsp1720I GCTNAGC 1 cut(s) 1479
BspANI GGCC 4 cut(s) 523, 1356, 1524, 1899
BspCNI CTCAG 6 cut(s) 401, 744, 1264, 1305, 1430, 1492
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 4 cut(s) 21, 593, 627, 1795
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 1 cut(s) 579
BspPI GGATC 5 cut(s) 66, 198, 247, 1788, 1801
BspT104I TTCGAA 1 cut(s) 1620
BspT107I GGYRCC 2 cut(s) 19, 591
BspTNI GGTCTC 1 cut(s) 169
BsrDI GCAATG 2 cut(s) 156, 1263
BsrGI TGTACA 1 cut(s) 1155
BsrI ACTGG 3 cut(s) 273, 643, 1666
BssECI CCNNGG 2 cut(s) 247, 632
BssMI GATC 7 cut(s) 58, 203, 239, 937, 1287, 1584, 1793
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 2 cut(s) 633, 1521
Bst4CI ACNGT 8 cut(s) 575, 610, 655, 768, 870, 879, 1458, 1850
BstAUI TGTACA 1 cut(s) 1155
BstBAI YACGTR 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 1620
BstDEI CTNAG 7 cut(s) 388, 730, 752, 1251, 1313, 1417, 1479
BstENI CCTNNNNNAGG 1 cut(s) 857
BstF5I GGATG 4 cut(s) 1013, 1678, 1680, 1738
BstHHI GCGC 1 cut(s) 710
BstKTI GATC 7 cut(s) 61, 206, 242, 940, 1290, 1587, 1796
BstMAI GTCTC 2 cut(s) 18, 169
BstMBI GATC 7 cut(s) 58, 203, 239, 937, 1287, 1584, 1793
BstMWI GCNNNNNNNGC 2 cut(s) 512, 1595
BstNI CCWGG 2 cut(s) 633, 1521
BstNSI RCATGY 2 cut(s) 708, 1535
BstSCI CCNGG 2 cut(s) 631, 1519
BstSFI CTRYAG 1 cut(s) 561
BstSLI GKGCMC 1 cut(s) 22
BstV1I GCAGC 5 cut(s) 485, 547, 735, 1462, 1902
BstX2I RGATCY 2 cut(s) 203, 1793
BstXI CCANNNNNNTGG 1 cut(s) 1028
BstYI RGATCY 2 cut(s) 203, 1793
BsuRI GGCC 4 cut(s) 523, 1356, 1524, 1899
BtgZI GCGATG 1 cut(s) 948
BtsCI GGATG 4 cut(s) 1013, 1678, 1680, 1738
BtsI GCAGTG 1 cut(s) 989
BtsIMutI CAGTG 2 cut(s) 875, 989
BveI ACCTGC 1 cut(s) 579
CaiI CAGNNNCTG 1 cut(s) 638
CciI TCATGA 1 cut(s) 345
CfoI GCGC 1 cut(s) 710
Cfr13I GGNCC 2 cut(s) 626, 1736
CseI GACGC 1 cut(s) 285
Csp6I GTAC 5 cut(s) 871, 918, 1047, 1156, 1404
CspCI CAANNNNNGTGG 4 cut(s) 703, 738, 978, 1013
CviAII CATG 6 cut(s) 346, 352, 705, 1204, 1532, 1643
CviQI GTAC 5 cut(s) 871, 918, 1047, 1156, 1404
DdeI CTNAG 7 cut(s) 388, 730, 752, 1251, 1313, 1417, 1479
DpnI GATC 7 cut(s) 60, 205, 241, 939, 1289, 1586, 1795
DpnII GATC 7 cut(s) 58, 203, 239, 937, 1287, 1584, 1793
DraI TTTAAA 2 cut(s) 543, 885
DraIII CACNNNGTG 1 cut(s) 1325
DriI GACNNNNNGTC 1 cut(s) 657
EaeI YGGCCR 1 cut(s) 1354
Eam1105I GACNNNNNGTC 1 cut(s) 657
Eco130I CCWWGG 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 169
Eco32I GATATC 2 cut(s) 154, 802
Eco47I GGWCC 2 cut(s) 626, 1736
Eco57I CTGAAG 2 cut(s) 1121, 1154
Eco88I CYCGRG 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 857
EcoO109I RGGNCCY 1 cut(s) 626
EcoRI GAATTC 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 631, 1519
EcoRV GATATC 2 cut(s) 154, 802
EcoT14I CCWWGG 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 1680
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 6 cut(s) 349, 355, 708, 1207, 1535, 1646
FaqI GGGAC 2 cut(s) 649, 1653
FatI CATG 6 cut(s) 345, 351, 704, 1203, 1531, 1642
FbaI TGATCA 1 cut(s) 937
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 5 cut(s) 499, 561, 749, 1476, 1916
FokI GGATG 4 cut(s) 1020, 1665, 1687, 1745
Fsp4HI GCNGC 5 cut(s) 499, 561, 749, 1476, 1916
FspBI CTAG 5 cut(s) 329, 516, 525, 1269, 1628
GlaI GCGC 1 cut(s) 709
GluI GCNGC 5 cut(s) 499, 561, 749, 1476, 1916
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 4 cut(s) 523, 1356, 1524, 1899
HgaI GACGC 1 cut(s) 285
HhaI GCGC 1 cut(s) 710
Hin1II CATG 6 cut(s) 349, 355, 708, 1207, 1535, 1646
Hin6I GCGC 1 cut(s) 708
HinP1I GCGC 1 cut(s) 708
HincII GTYRAC 1 cut(s) 1747
HindII GTYRAC 1 cut(s) 1747
HindIII AAGCTT 1 cut(s) 1612
HinfI GANTC 4 cut(s) 303, 1129, 1440, 1496
HphI GGTGA 4 cut(s) 161, 959, 1136, 1207
Hpy166II GTNNAC 6 cut(s) 326, 340, 1158, 1294, 1747, 1844
Hpy188III TCNNGA 6 cut(s) 207, 300, 346, 857, 1606, 1854
Hpy8I GTNNAC 6 cut(s) 326, 340, 1158, 1294, 1747, 1844
Hpy99I CGWCG 1 cut(s) 1823
HpyCH4III ACNGT 8 cut(s) 575, 610, 655, 768, 870, 879, 1458, 1850
HpyCH4IV ACGT 4 cut(s) 367, 956, 1085, 1909
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 1595
HpyF3I CTNAG 7 cut(s) 388, 730, 752, 1251, 1313, 1417, 1479
HpySE526I ACGT 4 cut(s) 367, 956, 1085, 1909
Hsp92II CATG 6 cut(s) 349, 355, 708, 1207, 1535, 1646
HspAI GCGC 1 cut(s) 708
Ksp22I TGATCA 1 cut(s) 937
Kzo9I GATC 7 cut(s) 58, 203, 239, 937, 1287, 1584, 1793
LmnI GCTCC 2 cut(s) 293, 715
Lsp1109I GCAGC 5 cut(s) 485, 547, 735, 1462, 1902
LweI GCATC 5 cut(s) 281, 1007, 1418, 1665, 1687
MaeI CTAG 5 cut(s) 329, 516, 525, 1269, 1628
MaeII ACGT 4 cut(s) 367, 956, 1085, 1909
MaeIII GTNAC 4 cut(s) 663, 736, 984, 1317
MalI GATC 7 cut(s) 60, 205, 241, 939, 1289, 1586, 1795
MboI GATC 7 cut(s) 58, 203, 239, 937, 1287, 1584, 1793
MboII GAAGA 4 cut(s) 404, 844, 1794, 1841
MfeI CAATTG 1 cut(s) 1297
MflI RGATCY 2 cut(s) 203, 1793
MhlI GDGCHC 1 cut(s) 22
MlsI TGGCCA 1 cut(s) 1356
MluNI TGGCCA 1 cut(s) 1356
MmeI TCCRAC 1 cut(s) 1364
Mox20I TGGCCA 1 cut(s) 1356
Mph1103I ATGCAT 1 cut(s) 1680
MroXI GAANNNNTTC 2 cut(s) 532, 1769
MscI TGGCCA 1 cut(s) 1356
MslI CAYNNNNRTG 4 cut(s) 350, 368, 945, 1026
Msp20I TGGCCA 1 cut(s) 1356
MspR9I CCNGG 2 cut(s) 633, 1521
MunI CAATTG 1 cut(s) 1297
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 2 cut(s) 633, 1521
MwoI GCNNNNNNNGC 2 cut(s) 512, 1595
NdeII GATC 7 cut(s) 58, 203, 239, 937, 1287, 1584, 1793
NlaIII CATG 6 cut(s) 349, 355, 708, 1207, 1535, 1646
NlaIV GGNNCC 4 cut(s) 21, 593, 627, 1795
NmuCI GTSAC 3 cut(s) 663, 736, 1317
NsiI ATGCAT 1 cut(s) 1680
NspI RCATGY 2 cut(s) 708, 1535
NspV TTCGAA 1 cut(s) 1620
OliI CACNNNNGTG 1 cut(s) 945
PagI TCATGA 1 cut(s) 345
PaqCI CACCTGC 1 cut(s) 579
PctI GAATGC 1 cut(s) 382
PdmI GAANNNNTTC 2 cut(s) 532, 1769
PfeI GAWTC 4 cut(s) 303, 1129, 1440, 1496
PflMI CCANNNNNTGG 2 cut(s) 146, 638
PkrI GCNGC 5 cut(s) 500, 562, 750, 1477, 1917
Ppu21I YACGTR 1 cut(s) 368
PpuMI RGGWCCY 1 cut(s) 626
Psp1406I AACGTT 1 cut(s) 1909
Psp5II RGGWCCY 1 cut(s) 626
Psp6I CCWGG 2 cut(s) 631, 1519
PspGI CCWGG 2 cut(s) 631, 1519
PspN4I GGNNCC 4 cut(s) 21, 593, 627, 1795
PspPI GGNCC 2 cut(s) 626, 1736
PspPPI RGGWCCY 1 cut(s) 626
PstI CTGCAG 1 cut(s) 565
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 2 cut(s) 203, 1793
RsaI GTAC 5 cut(s) 872, 919, 1048, 1157, 1405
RsaNI GTAC 5 cut(s) 871, 918, 1047, 1156, 1404
RseI CAYNNNNRTG 4 cut(s) 350, 368, 945, 1026
SatI GCNGC 5 cut(s) 499, 561, 749, 1476, 1916
Sau3AI GATC 7 cut(s) 58, 203, 239, 937, 1287, 1584, 1793
Sau96I GGNCC 2 cut(s) 626, 1736
ScaI AGTACT 1 cut(s) 872
ScrFI CCNGG 2 cut(s) 633, 1521
SduI GDGCHC 1 cut(s) 22
SfaNI GCATC 5 cut(s) 281, 1007, 1418, 1665, 1687
SfcI CTRYAG 1 cut(s) 561
SfuI TTCGAA 1 cut(s) 1620
SinI GGWCC 2 cut(s) 626, 1736
SmiI ATTTAAAT 1 cut(s) 543
SmiMI CAYNNNNRTG 4 cut(s) 350, 368, 945, 1026
SmlI CTYRAG 2 cut(s) 1226, 1775
SmoI CTYRAG 2 cut(s) 1226, 1775
SpeI ACTAGT 2 cut(s) 328, 1627
SspI AATATT 3 cut(s) 721, 1309, 1398
SspMI CTAG 5 cut(s) 329, 516, 525, 1269, 1628
StyD4I CCNGG 2 cut(s) 631, 1519
StyI CCWWGG 1 cut(s) 247
SwaI ATTTAAAT 1 cut(s) 543
TaaI ACNGT 8 cut(s) 575, 610, 655, 768, 870, 879, 1458, 1850
TaiI ACGT 4 cut(s) 370, 959, 1088, 1912
TaqI TCGA 6 cut(s) 275, 612, 929, 1528, 1620, 1853
TatI WGTACW 4 cut(s) 870, 917, 1155, 1403
TfiI GAWTC 4 cut(s) 303, 1129, 1440, 1496
TscAI CASTG 2 cut(s) 882, 996
TseFI GTSAC 3 cut(s) 663, 736, 1317
TseI GCWGC 5 cut(s) 498, 560, 748, 1475, 1915
Tsp45I GTSAC 3 cut(s) 663, 736, 1317
TspDTI ATGAA 6 cut(s) 362, 438, 1173, 1485, 1566, 1795
TspGWI ACGGA 3 cut(s) 1448, 1671, 1836
TspRI CASTG 2 cut(s) 882, 996
Van91I CCANNNNNTGG 2 cut(s) 146, 638
VpaK11BI GGWCC 2 cut(s) 626, 1736
XagI CCTNNNNNAGG 1 cut(s) 857
XapI RAATTY 6 cut(s) 33, 211, 445, 463, 1220, 1832
XceI RCATGY 2 cut(s) 708, 1535
XmiI GTMKAC 1 cut(s) 325
XmnI GAANNNNTTC 2 cut(s) 532, 1769
XspI CTAG 5 cut(s) 329, 516, 525, 1269, 1628
ZrmI AGTACT 1 cut(s) 872
Zsp2I ATGCAT 1 cut(s) 1680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.