Prupe.1G202500_v2.0.a1

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000279
Physical Location & Seq
Reverse (-)
20056198 .. 20060757
4560 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G202500.2

Sequence Viewer

Length: 3237 bp
ATGGATCATGAGGACAATGAGGTGAAGAAGCCTTTCGAAATTGCAGGTAGAAGCTTAATCGACTTGGTCTTCTCTTGGTCTCTTAGGAATGTTCTCTTCAGAGATCTTTACAAACACCAGGTGACCAAAATTCCAGAGACATTTTCGACAGTGGCGCGTTACATGAAGTCATTCATTCCTTCACTTATTGAAGAAACACATGCTGATTTACTCTCAAACGTTACGGCAATTTCGCAAGCACCTATTTGTGAGATTCTGACTGTTGAAACTTCTAAGCATCTTAGGCCTCCCAAAGACTTGTTTTATGAAATTACAGTTAGGAAGATGATTGCGACAGAAAGCAATGCAGGAAAATATGAGCCAGTGGTTGGAGATATCTTTGCCTTGACAAATATTAGACCAAAATGCATTGATGATTTGAACAGGCCTAAAAATTTCTATCTTATTGCATATGTTCTCGGATCGAAAGATAGCTCAGACAATCTCCAGATACTCTCATCAAAGCCTATCAGTGGGGAAGGATACAAGCAAATAAAGAGCAAGAGTGAAACACTGTTTGCTGTGTATCTGACGAACATGACCACAAATGTTCGTGTATGGAAAGCGTTGAACTCAGAAGAGACAAACACCAATATCATTAAGAATGTGCTGCAAGTGCAACCCAATTCATCAGATGTATTTTTCTGTACTCTTATCCTTAAATTTAAAGCAAATAGTCTATCCCTCACTAATCCATTTCATGTTTGTTACTTACAGGGGGAGAATTCTTGCGCAATCTGTTTTTCCGCAGACATGTGCTCCCCTGACCTTTCTACAAAATGGCCCACAGTGTGCTCTGATCTAAATGATTCCCAAAAGGCTGCAGTTTTAAACTGTATCAGTTTGAGTAAGTGTCATCACCATAATGCTGTAAAACTAATATGGGGTCCTCCTGGAACTGGAAAAACCAAGACAGTCGGTACGACACTCTTTGTCCTCTTTAAGTTGAAGTGCAGAACACTAACATGTGCACCAACCAATATTGCCGTGTTAGAAGTTACGGCACGACTCTTGAGGTTGGTTAATCAGACTCTTGAATATGGAAAGTATGGACTAGGAAATATAATTCTATTTGGGAATCTGGAGCGGATGAACATCGATAATTATAATGACCTTTTTGAGGTATTTCTTGATAGTCGTATTAGTATTCTGTCCGAGTGTCTTGCCCCTTTGTCTGGTTGGAAACATTGTTTAGAATCCATGATAGGTTTACTTGAGGATCCAGAGCAACTCTATTCCTTGTATTTAAAGGAAAAGAGGGAACAGCACAAAAAGAATGATGAGGACGATGAAGAAACTGATAATAGCAGCCAAGCAAGTGACAATGAGAGTGATCTTTTGACGTTTGAGGAGTTTGTGAAGAAAAAATTTGATGACGTTAGTGAGCATCTGAAAACTTGTATGGTAAACTTGTACACCCACTTGCCAACATCTTGCATTTCACTTGAGGTGGTGAAGGATATGATTAGAGTTTCGGATTTGCTTAAGTTGATTATATCTATATTGCATCGGGACGGTGTTGCCAATGAAAGGTTACAAACACTTCAAAAAGATTGCGCACAAATTCTTAAGTCGCTTCGTGAATTTTCTGTTCCAAATTCAAATGATGGACAAACAATAAGAAATTTGTGCTTGGCAAATGCTTGTTTAATATTTTGTACTGCGTCAAGCTCTGCAAAATTGCACACTGAAGGAATGGCACCTCTGGAAATGTTAGTGGTTGATGAAGCAGCTCAGCTGAAAGAATGTGAATCAGCAATTCCCTTACAACTACCTGGTCTTCGCCATGCTATTCTCATAGGAGATGAGATGCAACTCCCTGCTATGGTTAAAAGCAAGCTCTCCGAGAATGCTGAATTTGGAAGAAGTTTGTTCGAAAGACTTGTACTGTTAGGCCACGAGAAGCTCCTTCTTAATGTCCAGTATAGGATGCATCCATTGATCAGCAGGTTTCCGAAACAGGAGTTCTATAACAATCAGATACTAGATGGTCCGAATGTCAGTGAAGTAAGCTATGAGAAGTCCTTCATTGAGGGCAGAATGTACGGGCCATACTCCTTTATAAATGTAGCCAATGGAAAAGAAGAATTTGATCGCGGGCATAGTCTGAAAAACATGGTTGAGGTTGCTGTTGTATATAAGATAGTTTCATGCCTTTACAAAGAATTTACTCGAACAAAGAAGAAGGTTAGTATTGGGGTAATATCACCTTACAAGGCTCAAGTTAATGCAATTCAATTGAGAGTCAGAAACTACAGTGAAGTTTCTGGCACAGATTTCTCTGTAAGTGTGCGATCTGTTGATGGATTCCAAGGTGGTGAAGAGGATGTGATAATTATCTCCACTGTCAGATGTAATGGGAATGGATCTGTAGGTTTCCTCTCCAATCGTCAGCGAGCAAATGTGGTTCTAACTCGTGCCAGGTATTGCCTTTGGATATTGGGGAATGAAGGGACATTGACTAACAGTAACTCAATTTGGAAGAATCTAATTCTTGATGCGAAGAAACGCGATTGTTTCTATAATGCTGATGAGGACAATAACTTAGCTCAGGCTATTGCAGCAGCCCTTGTAGAGCATAACCAACTACATACTCTGCTTGATGCTGATTCTATGCTGTTCAAAAATGCAAAATGGAAGGTTTGGTTCGCCAAGGAATTTAGGAATTCAATAGCAGAAATTAAAGACACTGAGATTCGACAGGACGTAATTTCTTTAATAAAAAAGCTTTCTAATGGTTGGCGCCAATCTCAGAATGATAAAGTGATTATAGGCCATGCGAGGACTTCTGCTGAATTGCTAGAGACGTATGAAGTCAATGAGCTGCTGTATCTCATTTGGAGCGTAGAAATTCACAAGCAGAACTCAGATTTTGTCCAGGTTATGAAGATTTGGGACATTGTCCCACTTTCTGATATTCCTAAACTTACAGAGCGCCTTGACATCGTCTTTGGGAATTACACCGTCGAAAAGATGAACCGTTGCAAACTCAGATGTTTTGATGGGGTCACTGTTGTTCCAAATAGATGGCCAGCAGATTCGAGCAGCTGCGACGAAGCTGATCCAACGGAGTTCCTTTCAAAACCATTTTCTTCACTCAGTCTGAGAGATAGGCCATCATCAAGTTCATCTTTTAGAAATAATTTTATGTCAAGAATGAGTGGAACCAAGGGCACTGGATCGAGGCCAAGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

1079

Amino Acids

121.95

Weight (kDa)

6.65

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1146, 2102
Acc16I TGCGCA 2 cut(s) 772, 1597
Acc36I ACCTGC 2 cut(s) 35, 1977
AccB1I GGYRCC 2 cut(s) 1738, 2781
AccB7I CCANNNNNTGG 1 cut(s) 368
AccBSI CCGCTC 1 cut(s) 1126
AccII CGCG 3 cut(s) 157, 2136, 2550
AciI CCGC 3 cut(s) 786, 1126, 2136
AclI AACGTT 1 cut(s) 219
AclWI GGATC 7 cut(s) 12, 469, 1253, 1266, 2413, 3095, 3226
AcoI YGGCCR 1 cut(s) 3068
AcuI CTGAAG 2 cut(s) 82, 1749
AcyI GRCGYC 1 cut(s) 2782
AdeI CACNNNGTG 2 cut(s) 121, 831
AfaI GTAC 6 cut(s) 688, 961, 1454, 1699, 1926, 2084
AfiI CCNNNNNNNGG 7 cut(s) 368, 512, 938, 1159, 1214, 1569, 1864
AflII CTTAAG 2 cut(s) 1523, 1607
AflIII ACRYGT 2 cut(s) 792, 1004
AjnI CCWGG 5 cut(s) 117, 931, 1813, 2459, 2916
Alw21I GWGCWC 3 cut(s) 800, 836, 1012
Alw26I GTCTC 4 cut(s) 84, 131, 614, 2837
Alw44I GTGCAC 1 cut(s) 1008
AlwI GGATC 7 cut(s) 12, 469, 1253, 1266, 2413, 3095, 3226
AoxI GGCC 9 cut(s) 284, 425, 821, 1933, 2087, 2812, 3068, 3152, 3224
ApaLI GTGCAC 1 cut(s) 1008
ApeKI GCWGC 9 cut(s) 649, 860, 1347, 1769, 2600, 2603, 2863, 3084, 3087
ArsI GACNNNNNNTTYG 2 cut(s) 2972, 3004
Asp700I GAANNNNTTC 3 cut(s) 32, 170, 2063
AspLEI GCGC 5 cut(s) 157, 773, 1598, 2784, 2976
AspS9I GGNCC 4 cut(s) 822, 926, 2030, 2087
AsuHPI GGTGA 6 cut(s) 34, 133, 890, 1504, 2238, 2369
AsuII TTCGAA 2 cut(s) 36, 1914
AvaII GGWCC 2 cut(s) 926, 2030
BaeGI GKGCMC 2 cut(s) 1012, 3215
BalI TGGCCA 1 cut(s) 3070
BamHI GGATCC 1 cut(s) 1258
BanI GGYRCC 2 cut(s) 1738, 2781
BauI CACGAG 2 cut(s) 1937, 2454
BbsI GAAGAC 2 cut(s) 61, 1811
Bbv12I GWGCWC 3 cut(s) 800, 836, 1012
BbvI GCAGC 9 cut(s) 636, 847, 1359, 1781, 2612, 2615, 2850, 3074, 3096
BccI CCATC 7 cut(s) 1640, 2021, 2336, 3035, 3060, 3163, 3225
BceAI ACGGC 3 cut(s) 240, 1010, 1056
BcgI CGANNNNNNTGC 2 cut(s) 1184, 1218
BciT130I CCWGG 5 cut(s) 119, 933, 1815, 2461, 2918
BciVI GTATCC 1 cut(s) 515
BclI TGATCA 1 cut(s) 1980
BcoDI GTCTC 4 cut(s) 84, 131, 614, 2837
BfaI CTAG 3 cut(s) 1094, 2024, 2840
BfmI CTRYAG 3 cut(s) 861, 2293, 2409
BfoI RGCGCY 2 cut(s) 2785, 2977
BfrI CTTAAG 2 cut(s) 1523, 1607
BfuAI ACCTGC 2 cut(s) 35, 1977
BfuI GTATCC 1 cut(s) 515
BglII AGATCT 1 cut(s) 103
BisI GCNGC 9 cut(s) 650, 861, 1348, 1770, 2601, 2604, 2864, 3085, 3088
BlpI GCTNAGC 1 cut(s) 1773
BlsI GCNGC 9 cut(s) 651, 862, 1349, 1771, 2602, 2605, 2865, 3086, 3089
Bme1390I CCNGG 5 cut(s) 119, 933, 1815, 2461, 2918
Bme18I GGWCC 2 cut(s) 926, 2030
BmgT120I GGNCC 4 cut(s) 822, 926, 2030, 2087
BmiI GGNNCC 5 cut(s) 927, 1260, 1740, 2783, 3205
BmrFI CCNGG 5 cut(s) 119, 933, 1815, 2461, 2918
BmsI GCATC 8 cut(s) 286, 1435, 1555, 1839, 1959, 1981, 2527, 2632
BpiI GAAGAC 2 cut(s) 61, 1811
BpmI CTGGAG 2 cut(s) 470, 1142
Bpu10I CCTNAGC 1 cut(s) 2589
Bpu1102I GCTNAGC 1 cut(s) 1773
Bpu14I TTCGAA 2 cut(s) 36, 1914
BpuEI CTTGAG 4 cut(s) 1072, 1274, 1505, 2244
Bsa29I ATCGAT 1 cut(s) 1137
BsaBI GATNNNNATC 2 cut(s) 1133, 2375
BsaHI GRCGYC 1 cut(s) 2782
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 3 cut(s) 2350, 2691, 3207
BsaXI ACNNNNNCTCC 2 cut(s) 782, 812
Bsc4I CCNNNNNNNGG 7 cut(s) 368, 512, 938, 1159, 1214, 1569, 1864
Bse1I ACTGG 4 cut(s) 362, 943, 1960, 3220
Bse3DI GCAATG 1 cut(s) 349
Bse8I GATNNNNATC 2 cut(s) 1133, 2375
BseBI CCWGG 5 cut(s) 119, 933, 1815, 2461, 2918
BseCI ATCGAT 1 cut(s) 1137
BseDI CCNNGG 3 cut(s) 2350, 2691, 3207
BseGI GGATG 4 cut(s) 1134, 1972, 1974, 2371
BseJI GATNNNNATC 2 cut(s) 1133, 2375
BseLI CCNNNNNNNGG 7 cut(s) 368, 512, 938, 1159, 1214, 1569, 1864
BseMI GCAATG 1 cut(s) 349
BseNI ACTGG 4 cut(s) 362, 943, 1960, 3220
BseRI GAGGAG 1 cut(s) 1403
BseSI GKGCMC 2 cut(s) 1012, 3215
BseXI GCAGC 9 cut(s) 636, 847, 1359, 1781, 2612, 2615, 2850, 3074, 3096
BsgI GTGCAG 1 cut(s) 1012
Bsh1236I CGCG 3 cut(s) 157, 2136, 2550
BshFI GGCC 9 cut(s) 286, 427, 823, 1935, 2089, 2814, 3070, 3154, 3226
BshNI GGYRCC 2 cut(s) 1738, 2781
BshVI ATCGAT 1 cut(s) 1137
BsiHKAI GWGCWC 3 cut(s) 800, 836, 1012
BslFI GGGAC 4 cut(s) 1565, 2506, 2927, 2948
BslI CCNNNNNNNGG 7 cut(s) 368, 512, 938, 1159, 1214, 1569, 1864
BsmAI GTCTC 4 cut(s) 84, 131, 614, 2837
BsmBI CGTCTC 1 cut(s) 2837
BsmFI GGGAC 4 cut(s) 1565, 2506, 2927, 2948
BsmI GAATGC 1 cut(s) 1894
BsnI GGCC 9 cut(s) 286, 427, 823, 1935, 2089, 2814, 3070, 3154, 3226
Bso31I GGTCTC 1 cut(s) 84
Bsp119I TTCGAA 2 cut(s) 36, 1914
Bsp1286I GDGCHC 4 cut(s) 800, 836, 1012, 3215
Bsp1407I TGTACA 1 cut(s) 1452
Bsp1720I GCTNAGC 1 cut(s) 1773
BspACI CCGC 3 cut(s) 786, 1126, 2136
BspANI GGCC 9 cut(s) 286, 427, 823, 1935, 2089, 2814, 3070, 3154, 3226
BspDI ATCGAT 1 cut(s) 1137
BspFNI CGCG 3 cut(s) 157, 2136, 2550
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 5 cut(s) 927, 1260, 1740, 2783, 3205
BspMAI CTGCAG 1 cut(s) 865
BspMI ACCTGC 2 cut(s) 35, 1977
BspPI GGATC 7 cut(s) 12, 469, 1253, 1266, 2413, 3095, 3226
BspT104I TTCGAA 2 cut(s) 36, 1914
BspT107I GGYRCC 2 cut(s) 1738, 2781
BspTI CTTAAG 2 cut(s) 1523, 1607
BspTNI GGTCTC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 1126
BsrDI GCAATG 1 cut(s) 349
BsrGI TGTACA 1 cut(s) 1452
BsrI ACTGG 4 cut(s) 362, 943, 1960, 3220
BssECI CCNNGG 3 cut(s) 2350, 2691, 3207
BssNI GRCGYC 1 cut(s) 2782
BssSI CACGAG 2 cut(s) 1937, 2454
BssT1I CCWWGG 3 cut(s) 2350, 2691, 3207
Bst2BI CACGAG 2 cut(s) 1937, 2454
Bst2UI CCWGG 5 cut(s) 119, 933, 1815, 2461, 2918
Bst6I CTCTTC 3 cut(s) 101, 612, 2355
BstACI GRCGYC 1 cut(s) 2782
BstAFI CTTAAG 2 cut(s) 1523, 1607
BstAUI TGTACA 1 cut(s) 1452
BstBI TTCGAA 2 cut(s) 36, 1914
BstC8I GCNNGC 5 cut(s) 237, 1877, 2138, 2436, 3072
BstEII GGTNACC 1 cut(s) 121
BstENI CCTNNNNNAGG 1 cut(s) 1157
BstF5I GGATG 4 cut(s) 1134, 1972, 1974, 2371
BstFNI CGCG 3 cut(s) 157, 2136, 2550
BstH2I RGCGCY 2 cut(s) 2785, 2977
BstHHI GCGC 5 cut(s) 157, 773, 1598, 2784, 2976
BstMAI GTCTC 4 cut(s) 84, 131, 614, 2837
BstMWI GCNNNNNNNGC 3 cut(s) 283, 655, 2600
BstNI CCWGG 5 cut(s) 119, 933, 1815, 2461, 2918
BstNSI RCATGY 3 cut(s) 203, 796, 1008
BstPI GGTNACC 1 cut(s) 121
BstSCI CCNGG 5 cut(s) 117, 931, 1813, 2459, 2916
BstSFI CTRYAG 3 cut(s) 861, 2293, 2409
BstSLI GKGCMC 2 cut(s) 1012, 3215
BstUI CGCG 3 cut(s) 157, 2136, 2550
BstV1I GCAGC 9 cut(s) 636, 847, 1359, 1781, 2612, 2615, 2850, 3074, 3096
BstV2I GAAGAC 2 cut(s) 61, 1811
BstX2I RGATCY 3 cut(s) 103, 1258, 2405
BstXI CCANNNNNNTGG 1 cut(s) 3066
BstYI RGATCY 3 cut(s) 103, 1258, 2405
Bsu15I ATCGAT 1 cut(s) 1137
BsuI GTATCC 1 cut(s) 515
BsuRI GGCC 9 cut(s) 286, 427, 823, 1935, 2089, 2814, 3070, 3154, 3226
BsuTUI ATCGAT 1 cut(s) 1137
BtsCI GGATG 4 cut(s) 1134, 1972, 1974, 2371
BveI ACCTGC 2 cut(s) 35, 1977
Cac8I GCNNGC 5 cut(s) 237, 1877, 2138, 2436, 3072
CciI TCATGA 1 cut(s) 7
CfoI GCGC 5 cut(s) 157, 773, 1598, 2784, 2976
Cfr13I GGNCC 4 cut(s) 822, 926, 2030, 2087
ClaI ATCGAT 1 cut(s) 1137
CseI GACGC 1 cut(s) 1692
CsiI ACCWGGT 2 cut(s) 117, 1813
Csp6I GTAC 6 cut(s) 687, 960, 1453, 1698, 1925, 2083
CviQI GTAC 6 cut(s) 687, 960, 1453, 1698, 1925, 2083
DinI GGCGCC 1 cut(s) 2783
DraI TTTAAA 3 cut(s) 706, 870, 1287
DraIII CACNNNGTG 2 cut(s) 121, 831
EaeI YGGCCR 1 cut(s) 3068
Eam1104I CTCTTC 3 cut(s) 101, 612, 2355
EarI CTCTTC 3 cut(s) 101, 612, 2355
Eco130I CCWWGG 3 cut(s) 2350, 2691, 3207
Eco147I AGGCCT 2 cut(s) 286, 427
Eco31I GGTCTC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 926, 2030
Eco57I CTGAAG 2 cut(s) 82, 1749
Eco91I GGTNACC 1 cut(s) 121
EcoNI CCTNNNNNAGG 1 cut(s) 1157
EcoO109I RGGNCCY 1 cut(s) 926
EcoO65I GGTNACC 1 cut(s) 121
EcoRI GAATTC 2 cut(s) 763, 2704
EcoRII CCWGG 5 cut(s) 117, 931, 1813, 2459, 2916
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 3 cut(s) 2350, 2691, 3207
EcoT22I ATGCAT 2 cut(s) 410, 1974
EgeI GGCGCC 1 cut(s) 2783
EheI GGCGCC 1 cut(s) 2783
ErhI CCWWGG 3 cut(s) 2350, 2691, 3207
Esp3I CGTCTC 1 cut(s) 2837
FalI AAGNNNNNCTT 2 cut(s) 3154, 3186
FaqI GGGAC 4 cut(s) 1565, 2506, 2927, 2948
FauI CCCGC 1 cut(s) 2129
FauNDI CATATG 1 cut(s) 451
FbaI TGATCA 1 cut(s) 1980
Fnu4HI GCNGC 9 cut(s) 650, 861, 1348, 1770, 2601, 2604, 2864, 3085, 3088
FokI GGATG 4 cut(s) 1141, 1959, 1981, 2378
Fsp4HI GCNGC 9 cut(s) 650, 861, 1348, 1770, 2601, 2604, 2864, 3085, 3088
FspBI CTAG 3 cut(s) 1094, 2024, 2840
FspI TGCGCA 2 cut(s) 772, 1597
GlaI GCGC 5 cut(s) 156, 772, 1597, 2783, 2975
GluI GCNGC 9 cut(s) 650, 861, 1348, 1770, 2601, 2604, 2864, 3085, 3088
GsuI CTGGAG 2 cut(s) 470, 1142
HaeII RGCGCY 2 cut(s) 2785, 2977
HaeIII GGCC 9 cut(s) 286, 427, 823, 1935, 2089, 2814, 3070, 3154, 3226
HgaI GACGC 1 cut(s) 1692
HhaI GCGC 5 cut(s) 157, 773, 1598, 2784, 2976
Hin1I GRCGYC 1 cut(s) 2782
Hin6I GCGC 5 cut(s) 155, 771, 1596, 2782, 2974
HinP1I GCGC 5 cut(s) 155, 771, 1596, 2782, 2974
HindIII AAGCTT 2 cut(s) 52, 2765
HphI GGTGA 6 cut(s) 34, 133, 890, 1504, 2238, 2369
Hpy166II GTNNAC 4 cut(s) 1010, 1250, 1447, 1455
Hpy8I GTNNAC 4 cut(s) 1010, 1250, 1447, 1455
Hpy99I CGWCG 2 cut(s) 3008, 3095
HpyAV CCTTC 9 cut(s) 189, 512, 1489, 1724, 1958, 2074, 2218, 2483, 2671
HpyCH4IV ACGT 5 cut(s) 219, 1382, 1416, 2745, 2846
HpyF10VI GCNNNNNNNGC 3 cut(s) 283, 655, 2600
HpySE526I ACGT 5 cut(s) 219, 1382, 1416, 2745, 2846
Hsp92I GRCGYC 1 cut(s) 2782
HspAI GCGC 5 cut(s) 155, 771, 1596, 2782, 2974
KasI GGCGCC 1 cut(s) 2781
Ksp22I TGATCA 1 cut(s) 1980
LmnI GCTCC 4 cut(s) 803, 1123, 1950, 2880
Lsp1109I GCAGC 9 cut(s) 636, 847, 1359, 1781, 2612, 2615, 2850, 3074, 3096
LweI GCATC 8 cut(s) 286, 1435, 1555, 1839, 1959, 1981, 2527, 2632
MabI ACCWGGT 2 cut(s) 117, 1813
MaeI CTAG 3 cut(s) 1094, 2024, 2840
MaeII ACGT 5 cut(s) 219, 1382, 1416, 2745, 2846
MaeIII GTNAC 9 cut(s) 121, 158, 220, 746, 1036, 1358, 1572, 2507, 3046
MbiI CCGCTC 1 cut(s) 1126
MfeI CAATTG 1 cut(s) 2276
MflI RGATCY 3 cut(s) 103, 1258, 2405
MhlI GDGCHC 4 cut(s) 800, 836, 1012, 3215
MlsI TGGCCA 1 cut(s) 3070
MluNI TGGCCA 1 cut(s) 3070
Mly113I GGCGCC 1 cut(s) 2782
MlyI GAGTC 3 cut(s) 1041, 1063, 2292
MmeI TCCRAC 3 cut(s) 349, 1199, 3128
Mox20I TGGCCA 1 cut(s) 3070
Mph1103I ATGCAT 2 cut(s) 410, 1974
MroXI GAANNNNTTC 3 cut(s) 32, 170, 2063
MscI TGGCCA 1 cut(s) 3070
MslI CAYNNNNRTG 2 cut(s) 903, 1003
Msp20I TGGCCA 1 cut(s) 3070
MspA1I CMGCKG 2 cut(s) 1777, 3087
MspCI CTTAAG 2 cut(s) 1523, 1607
MspR9I CCNGG 5 cut(s) 119, 933, 1815, 2461, 2918
MunI CAATTG 1 cut(s) 2276
Mva1269I GAATGC 1 cut(s) 1894
MvaI CCWGG 5 cut(s) 119, 933, 1815, 2461, 2918
MvnI CGCG 3 cut(s) 157, 2136, 2550
MwoI GCNNNNNNNGC 3 cut(s) 283, 655, 2600
NarI GGCGCC 1 cut(s) 2782
NdeI CATATG 1 cut(s) 451
NlaIV GGNNCC 5 cut(s) 927, 1260, 1740, 2783, 3205
NmuCI GTSAC 3 cut(s) 121, 1358, 3046
NsbI TGCGCA 2 cut(s) 772, 1597
NsiI ATGCAT 2 cut(s) 410, 1974
NspI RCATGY 3 cut(s) 203, 796, 1008
NspV TTCGAA 2 cut(s) 36, 1914
PagI TCATGA 1 cut(s) 7
PceI AGGCCT 2 cut(s) 286, 427
PciI ACATGT 2 cut(s) 792, 1004
PctI GAATGC 1 cut(s) 1894
PdmI GAANNNNTTC 3 cut(s) 32, 170, 2063
PflFI GACNNNGTC 3 cut(s) 65, 2939, 2984
PflMI CCANNNNNTGG 1 cut(s) 368
PfoI TCCNGGA 1 cut(s) 931
PkrI GCNGC 9 cut(s) 651, 862, 1349, 1771, 2602, 2605, 2865, 3086, 3089
PleI GAGTC 3 cut(s) 1041, 1063, 2291
PluTI GGCGCC 1 cut(s) 2785
PpsI GAGTC 3 cut(s) 1041, 1063, 2291
PpuMI RGGWCCY 1 cut(s) 926
PscI ACATGT 2 cut(s) 792, 1004
PsiI TTATAA 2 cut(s) 1146, 2102
Psp1406I AACGTT 1 cut(s) 219
Psp5II RGGWCCY 1 cut(s) 926
Psp6I CCWGG 5 cut(s) 117, 931, 1813, 2459, 2916
PspEI GGTNACC 1 cut(s) 121
PspGI CCWGG 5 cut(s) 117, 931, 1813, 2459, 2916
PspN4I GGNNCC 5 cut(s) 927, 1260, 1740, 2783, 3205
PspPI GGNCC 4 cut(s) 822, 926, 2030, 2087
PspPPI RGGWCCY 1 cut(s) 926
PstI CTGCAG 1 cut(s) 865
PsuI RGATCY 3 cut(s) 103, 1258, 2405
PsyI GACNNNGTC 3 cut(s) 65, 2939, 2984
PvuII CAGCTG 2 cut(s) 1777, 3087
RsaI GTAC 6 cut(s) 688, 961, 1454, 1699, 1926, 2084
RsaNI GTAC 6 cut(s) 687, 960, 1453, 1698, 1925, 2083
RseI CAYNNNNRTG 2 cut(s) 903, 1003
SatI GCNGC 9 cut(s) 650, 861, 1348, 1770, 2601, 2604, 2864, 3085, 3088
Sau96I GGNCC 4 cut(s) 822, 926, 2030, 2087
SchI GAGTC 3 cut(s) 1041, 1063, 2292
ScrFI CCNGG 5 cut(s) 119, 933, 1815, 2461, 2918
SduI GDGCHC 4 cut(s) 800, 836, 1012, 3215
SexAI ACCWGGT 2 cut(s) 117, 1813
SfaNI GCATC 8 cut(s) 286, 1435, 1555, 1839, 1959, 1981, 2527, 2632
SfcI CTRYAG 3 cut(s) 861, 2293, 2409
SfoI GGCGCC 1 cut(s) 2783
SfuI TTCGAA 2 cut(s) 36, 1914
SinI GGWCC 2 cut(s) 926, 2030
SmiMI CAYNNNNRTG 2 cut(s) 903, 1003
SmlI CTYRAG 6 cut(s) 1051, 1253, 1484, 1523, 1607, 2259
SmoI CTYRAG 6 cut(s) 1051, 1253, 1484, 1523, 1607, 2259
SseBI AGGCCT 2 cut(s) 286, 427
SsiI CCGC 3 cut(s) 786, 1126, 2136
SspDI GGCGCC 1 cut(s) 2781
SspI AATATT 3 cut(s) 394, 1021, 1692
SspMI CTAG 3 cut(s) 1094, 2024, 2840
StuI AGGCCT 2 cut(s) 286, 427
StyD4I CCNGG 5 cut(s) 117, 931, 1813, 2459, 2916
StyI CCWWGG 3 cut(s) 2350, 2691, 3207
TaiI ACGT 5 cut(s) 222, 1385, 1419, 2748, 2849
TatI WGTACW 4 cut(s) 686, 1452, 1697, 1924
TseFI GTSAC 3 cut(s) 121, 1358, 3046
TseI GCWGC 9 cut(s) 649, 860, 1347, 1769, 2600, 2603, 2863, 3084, 3087
Tsp45I GTSAC 3 cut(s) 121, 1358, 3046
TspGWI ACGGA 1 cut(s) 3122
Tth111I GACNNNGTC 3 cut(s) 65, 2939, 2984
Van91I CCANNNNNTGG 1 cut(s) 368
Vha464I CTTAAG 2 cut(s) 1523, 1607
VneI GTGCAC 1 cut(s) 1008
VpaK11BI GGWCC 2 cut(s) 926, 2030
XagI CCTNNNNNAGG 1 cut(s) 1157
XceI RCATGY 3 cut(s) 203, 796, 1008
XmnI GAANNNNTTC 3 cut(s) 32, 170, 2063
XspI CTAG 3 cut(s) 1094, 2024, 2840
Zsp2I ATGCAT 2 cut(s) 410, 1974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.