Rorug03G0238500

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000279
Physical Location & Seq
Reverse (-)
22190459 .. 22191597
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0238500.1

Sequence Viewer

Length: 888 bp
ATGGCTTTGCTCCTATTCTTACCATTGATATGGCATCACTGTTCTTCTGGGTGCGCATCAGTAATATGCCTCTTGCGTTGGAGGAGCCGGAAACCATCAAAGCTATGGCCAGTGTTGTTGGTACGTAGCTATCTTGATATGGATGATAAGCTGTTTAACACGAAGGGAACCATCCGGGTAAGGGTTGCTCATGCCTTAGACAAGCTTTTCTTCCTGAAGAAGACCCTAAAGCTGGCACCAGGTATTGTTGAAGAAATCGATTTATTTTTTGAAAACTTGTTGGGGTTATGTAAGAGTTGTAATATGGTATTCCACGAGGATGGTAAATGCAAGGCTACTCCACGCTCGACCATGAAGCAGGGAGCTTTGCAAAAAGAAAACAGGCTGGAGCTTCCAAATCCTTTCCAAAATGTAATCAATGGGGCTTATGCAACTGGAGGTTTTAGTTTTCAAGGGGATCGAACAATCCCTTCAATCCCTCGTACTCTCTTTGGCTTGAAGGAAACAACAAAGCCTCCGAAACCTGTGGTCATTAGAAAAGAAACTGTGAAAACCTCGGGGGATGTGGGAAGCTCTCGAGCATTGATACCGATTGATACTAATATTGAAATGGAGACTGTCAGTGAGTTGAAACACTCTACAGGTATGGTGGCAAACCAAGTACTGGATGTTGTGAATGTTGCAAGCCAGGAAAATGAGGATGTGATCGAACTTGAACTTGAGAAGCCAGAGGAGGTGGTCACTGATACCCCTTCTGTGGAAAAGGAAACTGTGATGCAGGAAATCACAACAAATACAGAACAGCAGGAAAAGGAAACCACAGAAGATATAACTCGAGGGAGAAGCGAGGAAGGCCTGCATCTCCTCGTGTGTCTCCTAAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

295

Amino Acids

33.12

Weight (kDa)

6.35

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 235
AccB7I CCANNNNNTGG 1 cut(s) 664
AclWI GGATC 1 cut(s) 465
AcoI YGGCCR 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 3 cut(s) 123, 484, 663
AfiI CCNNNNNNNGG 4 cut(s) 181, 232, 664, 757
AgsI TTSAA 8 cut(s) 251, 272, 452, 474, 499, 608, 631, 716
AjnI CCWGG 2 cut(s) 238, 687
AluBI AGCT 8 cut(s) 103, 129, 151, 205, 232, 365, 391, 573
AluI AGCT 8 cut(s) 103, 129, 151, 205, 232, 365, 391, 573
Alw26I GTCTC 2 cut(s) 608, 878
AlwI GGATC 1 cut(s) 465
Ama87I CYCGRG 3 cut(s) 556, 576, 834
AoxI GGCC 2 cut(s) 107, 853
AspLEI GCGC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 176
AvaI CYCGRG 3 cut(s) 556, 576, 834
BalI TGGCCA 1 cut(s) 109
BanI GGYRCC 1 cut(s) 235
BauI CACGAG 2 cut(s) 314, 866
BbsI GAAGAC 1 cut(s) 227
BccI CCATC 3 cut(s) 103, 179, 314
BciT130I CCWGG 2 cut(s) 240, 689
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 608, 878
BfmI CTRYAG 1 cut(s) 639
BmcAI AGTACT 1 cut(s) 663
Bme1390I CCNGG 3 cut(s) 176, 240, 689
BmeT110I CYCGRG 3 cut(s) 556, 576, 834
BmiI GGNNCC 3 cut(s) 86, 169, 237
BmrFI CCNGG 3 cut(s) 176, 240, 689
BmsI GCATC 4 cut(s) 43, 65, 765, 868
BpiI GAAGAC 1 cut(s) 227
BpmI CTGGAG 2 cut(s) 407, 456
BpuEI CTTGAG 1 cut(s) 740
BpuMI CCSGG 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 555
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 232, 664, 757
Bse1I ACTGG 3 cut(s) 110, 439, 669
BseBI CCWGG 2 cut(s) 240, 689
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 6 cut(s) 148, 171, 325, 568, 673, 706
BseLI CCNNNNNNNGG 4 cut(s) 181, 232, 664, 757
BseNI ACTGG 3 cut(s) 110, 439, 669
BseRI GAGGAG 3 cut(s) 97, 746, 854
BshFI GGCC 2 cut(s) 109, 855
BshNI GGYRCC 1 cut(s) 235
BshVI ATCGAT 1 cut(s) 258
BsiHKCI CYCGRG 3 cut(s) 556, 576, 834
BsiSI CCGG 2 cut(s) 88, 175
BslI CCNNNNNNNGG 4 cut(s) 181, 232, 664, 757
BsmAI GTCTC 2 cut(s) 608, 878
BsnI GGCC 2 cut(s) 109, 855
BsoBI CYCGRG 3 cut(s) 556, 576, 834
Bsp143I GATC 2 cut(s) 457, 705
BspANI GGCC 2 cut(s) 109, 855
BspDI ATCGAT 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 86, 169, 237
BspPI GGATC 1 cut(s) 465
BspT107I GGYRCC 1 cut(s) 235
BsrI ACTGG 3 cut(s) 110, 439, 669
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 2 cut(s) 457, 705
BssSI CACGAG 2 cut(s) 314, 866
Bst2BI CACGAG 2 cut(s) 314, 866
Bst2UI CCWGG 2 cut(s) 240, 689
Bst4CI ACNGT 4 cut(s) 41, 547, 619, 772
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 3 cut(s) 234, 685, 857
BstDEI CTNAG 1 cut(s) 196
BstF5I GGATG 6 cut(s) 148, 171, 325, 568, 673, 706
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 460, 708
BstMAI GTCTC 2 cut(s) 608, 878
BstMBI GATC 2 cut(s) 457, 705
BstMWI GCNNNNNNNGC 1 cut(s) 852
BstNI CCWGG 2 cut(s) 240, 689
BstSCI CCNGG 3 cut(s) 174, 238, 687
BstSFI CTRYAG 1 cut(s) 639
BstSNI TACGTA 1 cut(s) 125
BstV2I GAAGAC 1 cut(s) 227
BstXI CCANNNNNNTGG 2 cut(s) 30, 320
Bsu15I ATCGAT 1 cut(s) 258
BsuRI GGCC 2 cut(s) 109, 855
BsuTUI ATCGAT 1 cut(s) 258
BtsCI GGATG 6 cut(s) 148, 171, 325, 568, 673, 706
BtsIMutI CAGTG 4 cut(s) 37, 117, 628, 741
Cac8I GCNNGC 3 cut(s) 234, 685, 857
CfoI GCGC 1 cut(s) 56
ClaI ATCGAT 1 cut(s) 258
CsiI ACCWGGT 1 cut(s) 238
Csp6I GTAC 3 cut(s) 122, 483, 662
CviAII CATG 2 cut(s) 191, 352
CviQI GTAC 3 cut(s) 122, 483, 662
DdeI CTNAG 1 cut(s) 196
DpnI GATC 2 cut(s) 459, 707
DpnII GATC 2 cut(s) 457, 705
EaeI YGGCCR 1 cut(s) 107
Eco105I TACGTA 1 cut(s) 125
Eco147I AGGCCT 1 cut(s) 855
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 3 cut(s) 556, 576, 834
EcoRII CCWGG 2 cut(s) 238, 687
FaeI CATG 2 cut(s) 194, 355
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 2 cut(s) 190, 351
FokI GGATG 6 cut(s) 155, 158, 332, 575, 680, 713
FspAI RTGCGCAY 1 cut(s) 55
FspI TGCGCA 1 cut(s) 55
GlaI GCGC 1 cut(s) 55
GsuI CTGGAG 2 cut(s) 407, 456
HaeIII GGCC 2 cut(s) 109, 855
HapII CCGG 2 cut(s) 88, 175
HhaI GCGC 1 cut(s) 56
Hin1II CATG 2 cut(s) 194, 355
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 203
HpaII CCGG 2 cut(s) 88, 175
Hpy188I TCNGA 1 cut(s) 519
Hpy188III TCNNGA 3 cut(s) 134, 214, 576
HpyAV CCTTC 5 cut(s) 157, 480, 493, 762, 845
HpyCH4III ACNGT 4 cut(s) 41, 547, 619, 772
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 6 cut(s) 330, 370, 431, 683, 778, 859
HpyF10VI GCNNNNNNNGC 1 cut(s) 852
HpyF3I CTNAG 1 cut(s) 196
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 2 cut(s) 194, 355
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 457, 705
LmnI GCTCC 4 cut(s) 15, 84, 362, 388
LweI GCATC 4 cut(s) 43, 65, 765, 868
MabI ACCWGGT 1 cut(s) 238
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 739
MalI GATC 2 cut(s) 459, 707
MboI GATC 2 cut(s) 457, 705
MboII GAAGA 6 cut(s) 36, 202, 229, 232, 263, 836
MlsI TGGCCA 1 cut(s) 109
MluNI TGGCCA 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 59
Mox20I TGGCCA 1 cut(s) 109
MscI TGGCCA 1 cut(s) 109
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 2 cut(s) 28, 318
Msp20I TGGCCA 1 cut(s) 109
MspI CCGG 2 cut(s) 88, 175
MspR9I CCNGG 3 cut(s) 176, 240, 689
MvaI CCWGG 2 cut(s) 240, 689
MwoI GCNNNNNNNGC 1 cut(s) 852
NciI CCSGG 1 cut(s) 176
NdeII GATC 2 cut(s) 457, 705
NlaIII CATG 2 cut(s) 194, 355
NlaIV GGNNCC 3 cut(s) 86, 169, 237
NmuCI GTSAC 1 cut(s) 739
NsbI TGCGCA 1 cut(s) 55
PaeR7I CTCGAG 2 cut(s) 576, 834
PceI AGGCCT 1 cut(s) 855
PflMI CCANNNNNTGG 1 cut(s) 664
Ppu21I YACGTR 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 238, 687
PspGI CCWGG 2 cut(s) 238, 687
PspN4I GGNNCC 3 cut(s) 86, 169, 237
PspXI VCTCGAGB 1 cut(s) 834
RsaI GTAC 3 cut(s) 123, 484, 663
RsaNI GTAC 3 cut(s) 122, 483, 662
RseI CAYNNNNRTG 2 cut(s) 28, 318
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 2 cut(s) 457, 705
ScaI AGTACT 1 cut(s) 663
ScrFI CCNGG 3 cut(s) 176, 240, 689
SexAI ACCWGGT 1 cut(s) 238
SfaNI GCATC 4 cut(s) 43, 65, 765, 868
SfcI CTRYAG 1 cut(s) 639
Sfr274I CTCGAG 2 cut(s) 576, 834
SlaI CTCGAG 2 cut(s) 576, 834
SmiMI CAYNNNNRTG 2 cut(s) 28, 318
SmlI CTYRAG 3 cut(s) 576, 719, 834
SmoI CTYRAG 3 cut(s) 576, 719, 834
SnaBI TACGTA 1 cut(s) 125
SseBI AGGCCT 1 cut(s) 855
SspI AATATT 1 cut(s) 604
StuI AGGCCT 1 cut(s) 855
StyD4I CCNGG 3 cut(s) 174, 238, 687
TaaI ACNGT 4 cut(s) 41, 547, 619, 772
TaiI ACGT 1 cut(s) 127
TaqI TCGA 6 cut(s) 258, 347, 460, 577, 708, 835
TatI WGTACW 1 cut(s) 661
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 4 cut(s) 44, 117, 628, 748
TseFI GTSAC 1 cut(s) 739
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 1 cut(s) 368
TspRI CASTG 4 cut(s) 44, 117, 628, 748
Van91I CCANNNNNTGG 1 cut(s) 664
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XhoI CTCGAG 2 cut(s) 576, 834
ZrmI AGTACT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.