Rmu_sc0011052.1_g000014

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011052.1
OG0000279
Physical Location & Seq
Forward (+)
39158 .. 43709
4552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011052.1_g000014.1.cds

Sequence Viewer

Length: 3132 bp
atggggatgacgagtaagctgaaacaggaacaagttgcagatacaagaagccttgtgggtttggtattctcttggactataagggatgttctcaatggaaacctttatagaaatcaggtgcagaggatccccgacacatttgtgacattgacgagttacaagaaatcattcattccttcacttgttgaggaaactcatgctgatttactatcgaatatgttgaatctgtcacaagcacctacttgtgaaattctgacaatcgaagattcagatggaactcctggtgacttgctttacgatgtaacatatcagagagatacagaaactgatgagaatcacaaaggactgatgtatgagccacaggttggagatatcattgccttgactaatgttagaccaaaatgcattgatgatttgaacaggcctccaaggttctatctaatcgcttatgttcataaagcaaatgatattgaagaatttcctgatgatctccagttcaaaatactatcatcgaagcctatcaactatggagaaccagacatgcataagagcaagagagagacactttttgctgtctatcttatgaacttgacaacaaatctccgtgtatggaaggctttgaactcagagggaaatacaaatatcattaacaaagttctgcaacccaagtcagatgatggggattcttgttctgtttgcttctccaaagaaaaatgcagtactggcatttctgcattatggcctacaatttgctctcaaaatctaaatgaatcccaagaagctgcagttttgaactgtatcagtttgactcaatgccatcaccagaattccgtaaaattaatatggggtcctcctggtactggcaagacgaagacaatgagtctgacactctttgctctctttcagttaaagtgcagaactctcacatgtgctcccaccaatattgcagtgctagaagtagcagcaagactccggagattggttaaccagtcactcgagtatggcaggtatggactaggagatatagttctctttggtaacaagaagcgaatgaagattgacaataatgatgatcttcgtgatatatttcttgatcatcgtgttaaaattctcatcaagtgtttggtacctttatctgggtggaaacatttgttagaatcaatgatacatttacttgatgatcctgaggaacaatattctttgtatttggaaaacagagctaaagagcagaaacagaatgcacaaaaacatgaggaggataatcaaaaacataatggagaagaggattatcctttgacatatgaggagtttgtaaagaatgaatttgattcaatcagtcaggagctgaaggtttgtatggtagatttgtacacccacttaccaacttgttgcatttcacttaaagtggtgaaggacatggtcagagctttgggttttctcaagtctattaaatcttcattgcatactactgttgttgctaatgaagggttgaagttagtcttcaaagattccacagttccaggaagcattgttggttgccttacgcagttgagaacagagtgtacaaacacactgaagtcgcttcctattaacaaatatgcattaatgaacttctgcctagaaaatgcttgcttaatattctgtactgcatcaacttcttccaaattgcatgttgtagcaggaacaagaccattggaattgttggtcattgatgaagctgctcagcttaaagaatgtgaatcagcaattcctttacaactatctggtctccgccatgctatccttgtaggagatgagaggcaactccctgccatggttaaaagcgagattgcagtaagtgctgattttggaagaagtttgtttggaaggctggcaaagttggggcacaagaagcacctactcaatgtccagtacaggatgcatccatccatcagtttatttccaaaaagggagttctacgacaaccagatagtagatggtccaaatgtcaaagaaagaagctatgagaggtgcttcctcaagggaaaaatgtaccaatcctattccttcataaatgtagccgatggaaaagaagaatttgatcacagatttagtcggaaaaatatggtggaggttgctgtagtctctgggatagtagcaagcctttataaagaatttattggaaaaaagaagaaagttagtattggggtcatatcaccatacaaggctcaagtttatgcaattcaagagatactcagaaaatatactgaaacttctggtactggattctccgtgagtgtgcgatctgttgacgggttccaaggtggtgaagaagatgtgataattatatccactgtccgatgtaatgggaagggatcagttggtttcttgtcgaaccggcaaagagcaaatgttgcgttaacacgtgcaaggtattgcctttggatattggggaatgcgtcaactttgattactagtgactctgtttggaagaagctagtccttgatgccaagaaacggaactgtttttataatgctgatgaagacagcgacttggcccaggctattacagcagccctgctcaagcttgaccaacttcattctctgcttaatattgactctatgctgttcaaaaacgctatatggaaggtttgcttcactgatgactttcggaactccataataaaaattaaagacactgtgattcttcgggaagtactcgcgttattaaccaagctttcgagtggatggcgccgacctcacaaggataaaggaaatttagtgtatgatgggacttctgctcagctgttagagaagtacaaaatcaaagggcacttgaatctcatttggactgtagatattctccaagagaatgcacattacgtccaagttatgaagttttgggatattttaccattttctcatataccagaactagcaaagcgtcttgacattgtttttggaaattttacagtggataagatgaaccgctgcaggcacaaatgcattgacagggatactgttgttccaatgagatggccagtggttttcagaaattttcctgcagctgatcatgaggagttcctttcaaaaccattgtcttctttccgtataactactaatggagaaacagcaacttcaacacatgggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

1043

Amino Acids

118.11

Weight (kDa)

8.46

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2148, 2511
Acc36I ACCTGC 1 cut(s) 996
Acc65I GGTACC 1 cut(s) 1126
AccB1I GGYRCC 2 cut(s) 1126, 2730
AccB7I CCANNNNNTGG 1 cut(s) 365
AccII CGCG 1 cut(s) 2702
AccIII TCCGGA 1 cut(s) 972
AciI CCGC 2 cut(s) 1771, 2968
AclWI GGATC 4 cut(s) 121, 134, 1175, 2362
AcoI YGGCCR 1 cut(s) 3017
AcuI CTGAAG 2 cut(s) 1367, 1595
AcvI CACGTG 1 cut(s) 2405
AcyI GRCGYC 1 cut(s) 2731
AfiI CCNNNNNNNGG 6 cut(s) 365, 860, 979, 1136, 1813, 2496
AflIII ACRYGT 2 cut(s) 926, 2402
AhdI GACNNNNNGTC 1 cut(s) 879
AhlI ACTAGT 1 cut(s) 2453
AjnI CCWGG 4 cut(s) 280, 853, 1519, 2538
AleI CACNNNNGTG 2 cut(s) 140, 3127
AloI GAACNNNNNNTCC 2 cut(s) 1011, 1043
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 3 cut(s) 554, 1772, 2128
AlwI GGATC 4 cut(s) 121, 134, 1175, 2362
AlwNI CAGNNNCTG 2 cut(s) 326, 1345
Ama87I CYCGRG 1 cut(s) 995
Aor13HI TCCGGA 1 cut(s) 972
AoxI GGCC 4 cut(s) 422, 740, 2535, 3017
ApeKI GCWGC 6 cut(s) 782, 962, 1718, 2552, 2970, 3044
ArsI GACNNNNNNTTYG 4 cut(s) 2921, 2953, 3062, 3094
AseI ATTAAT 2 cut(s) 839, 1604
Asp700I GAANNNNTTC 2 cut(s) 167, 477
Asp718I GGTACC 1 cut(s) 1126
AspLEI GCGC 1 cut(s) 2733
AspS9I GGNCC 3 cut(s) 848, 1979, 2536
AsuHPI GGTGA 5 cut(s) 296, 812, 1420, 2187, 2318
AvaI CYCGRG 1 cut(s) 995
AvaII GGWCC 2 cut(s) 848, 1979
AxyI CCTNAGG 1 cut(s) 1185
BaeGI GKGCMC 2 cut(s) 1887, 2814
BaeI ACNNNNGTAYC 2 cut(s) 2988, 3021
BalI TGGCCA 1 cut(s) 3019
BamHI GGATCC 1 cut(s) 126
BanI GGYRCC 2 cut(s) 1126, 2730
BbrPI CACGTG 1 cut(s) 2405
BbsI GAAGAC 4 cut(s) 878, 1492, 2529, 3072
Bbv12I GWGCWC 1 cut(s) 934
BbvI GCAGC 6 cut(s) 769, 974, 1705, 2564, 2957, 3056
BciT130I CCWGG 4 cut(s) 282, 855, 1521, 2540
BciVI GTATCC 1 cut(s) 2989
BclI TGATCA 3 cut(s) 1093, 2080, 3049
BcoDI GTCTC 3 cut(s) 554, 1772, 2128
BcuI ACTAGT 1 cut(s) 2453
BfaI CTAG 6 cut(s) 953, 1016, 1619, 2454, 2477, 2915
BfmI CTRYAG 5 cut(s) 783, 2118, 2832, 2971, 3042
BfoI RGCGCY 1 cut(s) 2734
BfuAI ACCTGC 1 cut(s) 996
BfuI GTATCC 1 cut(s) 2989
BisI GCNGC 6 cut(s) 783, 963, 1719, 2553, 2971, 3045
BlpI GCTNAGC 2 cut(s) 1722, 2781
BlsI GCNGC 6 cut(s) 784, 964, 1720, 2554, 2972, 3046
BmcAI AGTACT 2 cut(s) 721, 2697
Bme1390I CCNGG 4 cut(s) 282, 855, 1521, 2540
Bme18I GGWCC 2 cut(s) 848, 1979
BmeRI GACNNNNNGTC 1 cut(s) 879
BmeT110I CYCGRG 1 cut(s) 995
BmgT120I GGNCC 3 cut(s) 848, 1979, 2536
BmiI GGNNCC 5 cut(s) 128, 849, 1128, 2297, 2732
BmrFI CCNGG 4 cut(s) 282, 855, 1521, 2540
BmsI GCATC 4 cut(s) 1658, 1908, 1930, 2476
BpiI GAAGAC 4 cut(s) 878, 1492, 2529, 3072
BpmI CTGGAG 1 cut(s) 476
Bpu1102I GCTNAGC 2 cut(s) 1722, 2781
BpuEI CTTGAG 4 cut(s) 1424, 2003, 2193, 2546
BsaAI YACGTR 1 cut(s) 2405
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 2731
BsaI GGTCTC 1 cut(s) 1772
BsaJI CCNNGG 4 cut(s) 428, 1812, 2299, 2538
BsaWI WCCGGW 1 cut(s) 972
BsaXI ACNNNNNCTCC 4 cut(s) 916, 946, 1011, 1041
Bsc4I CCNNNNNNNGG 6 cut(s) 365, 860, 979, 1136, 1813, 2496
Bse118I RCCGGY 1 cut(s) 2376
Bse1I ACTGG 7 cut(s) 493, 727, 865, 988, 1909, 2266, 3020
Bse21I CCTNAGG 1 cut(s) 1185
Bse3DI GCAATG 2 cut(s) 375, 1457
Bse8I GATNNNNATC 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 972
BseBI CCWGG 4 cut(s) 282, 855, 1521, 2540
BseDI CCNNGG 4 cut(s) 428, 1812, 2299, 2538
BseGI GGATG 6 cut(s) 12, 91, 1921, 1923, 1925, 2732
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 6 cut(s) 365, 860, 979, 1136, 1813, 2496
BseMI GCAATG 2 cut(s) 375, 1457
BseMII CTCAG 5 cut(s) 639, 1176, 1736, 2248, 2795
BseNI ACTGG 7 cut(s) 493, 727, 865, 988, 1909, 2266, 3020
BseRI GAGGAG 3 cut(s) 1268, 1319, 3071
BseSI GKGCMC 2 cut(s) 1887, 2814
BseXI GCAGC 6 cut(s) 769, 974, 1705, 2564, 2957, 3056
BsgI GTGCAG 2 cut(s) 140, 934
Bsh1236I CGCG 1 cut(s) 2702
BshFI GGCC 4 cut(s) 424, 742, 2537, 3019
BshNI GGYRCC 2 cut(s) 1126, 2730
BsiHKAI GWGCWC 1 cut(s) 934
BsiHKCI CYCGRG 1 cut(s) 995
BsiSI CCGG 2 cut(s) 973, 2377
BslFI GGGAC 1 cut(s) 2785
BslI CCNNNNNNNGG 6 cut(s) 365, 860, 979, 1136, 1813, 2496
BsmAI GTCTC 3 cut(s) 554, 1772, 2128
BsmFI GGGAC 1 cut(s) 2785
BsmI GAATGC 3 cut(s) 1243, 2440, 2857
BsnI GGCC 4 cut(s) 424, 742, 2537, 3019
Bso31I GGTCTC 1 cut(s) 1772
BsoBI CYCGRG 1 cut(s) 995
Bsp1286I GDGCHC 3 cut(s) 934, 1887, 2814
Bsp13I TCCGGA 1 cut(s) 972
Bsp1407I TGTACA 2 cut(s) 1368, 1562
Bsp143I GATC 9 cut(s) 126, 487, 1072, 1093, 1180, 2080, 2282, 2354, 3049
Bsp1720I GCTNAGC 2 cut(s) 1722, 2781
Bsp19I CCATGG 1 cut(s) 1812
BspACI CCGC 2 cut(s) 1771, 2968
BspANI GGCC 4 cut(s) 424, 742, 2537, 3019
BspCNI CTCAG 5 cut(s) 638, 1177, 1735, 2247, 2794
BspEI TCCGGA 1 cut(s) 972
BspFNI CGCG 1 cut(s) 2702
BspHI TCATGA 1 cut(s) 3052
BspLI GGNNCC 5 cut(s) 128, 849, 1128, 2297, 2732
BspMAI CTGCAG 3 cut(s) 787, 2975, 3046
BspMI ACCTGC 1 cut(s) 996
BspPI GGATC 4 cut(s) 121, 134, 1175, 2362
BspT107I GGYRCC 2 cut(s) 1126, 2730
BspTNI GGTCTC 1 cut(s) 1772
BsrDI GCAATG 2 cut(s) 375, 1457
BsrFI RCCGGY 1 cut(s) 2376
BsrGI TGTACA 2 cut(s) 1368, 1562
BsrI ACTGG 7 cut(s) 493, 727, 865, 988, 1909, 2266, 3020
BssAI RCCGGY 1 cut(s) 2376
BssECI CCNNGG 4 cut(s) 428, 1812, 2299, 2538
BssMI GATC 9 cut(s) 126, 487, 1072, 1093, 1180, 2080, 2282, 2354, 3049
BssNI GRCGYC 1 cut(s) 2731
BssT1I CCWWGG 3 cut(s) 428, 1812, 2299
Bst2UI CCWGG 4 cut(s) 282, 855, 1521, 2540
Bst4CI ACNGT 9 cut(s) 797, 1471, 1516, 2335, 2504, 2680, 2833, 2953, 3001
Bst6I CTCTTC 1 cut(s) 1275
BstACI GRCGYC 1 cut(s) 2731
BstAPI GCANNNNNTGC 2 cut(s) 1838, 2393
BstAUI TGTACA 2 cut(s) 1368, 1562
BstBAI YACGTR 1 cut(s) 2405
BstC8I GCNNGC 4 cut(s) 1630, 1872, 2140, 2975
BstDEI CTNAG 5 cut(s) 625, 1185, 1722, 2234, 2781
BstDSI CCRYGG 1 cut(s) 1812
BstF5I GGATG 6 cut(s) 12, 91, 1921, 1923, 1925, 2732
BstFNI CGCG 1 cut(s) 2702
BstH2I RGCGCY 1 cut(s) 2734
BstHHI GCGC 1 cut(s) 2733
BstKTI GATC 9 cut(s) 129, 490, 1075, 1096, 1183, 2083, 2285, 2357, 3052
BstMAI GTCTC 3 cut(s) 554, 1772, 2128
BstMBI GATC 9 cut(s) 126, 487, 1072, 1093, 1180, 2080, 2282, 2354, 3049
BstMWI GCNNNNNNNGC 5 cut(s) 723, 1838, 1891, 2393, 2549
BstNI CCWGG 4 cut(s) 282, 855, 1521, 2540
BstNSI RCATGY 3 cut(s) 544, 930, 1673
BstSCI CCNGG 4 cut(s) 280, 853, 1519, 2538
BstSFI CTRYAG 5 cut(s) 783, 2118, 2832, 2971, 3042
BstSLI GKGCMC 2 cut(s) 1887, 2814
BstUI CGCG 1 cut(s) 2702
BstV1I GCAGC 6 cut(s) 769, 974, 1705, 2564, 2957, 3056
BstV2I GAAGAC 4 cut(s) 878, 1492, 2529, 3072
BstX2I RGATCY 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 3015
BstYI RGATCY 1 cut(s) 126
Bsu36I CCTNAGG 1 cut(s) 1185
BsuI GTATCC 1 cut(s) 2989
BsuRI GGCC 4 cut(s) 424, 742, 2537, 3019
BtgI CCRYGG 1 cut(s) 1812
BtsCI GGATG 6 cut(s) 12, 91, 1921, 1923, 1925, 2732
BtsI GCAGTG 1 cut(s) 954
BtsIMutI CAGTG 7 cut(s) 954, 1571, 2331, 2637, 2676, 2958, 3027
BveI ACCTGC 1 cut(s) 996
Cac8I GCNNGC 4 cut(s) 1630, 1872, 2140, 2975
CaiI CAGNNNCTG 2 cut(s) 326, 1345
CciI TCATGA 1 cut(s) 3052
CfoI GCGC 1 cut(s) 2733
Cfr10I RCCGGY 1 cut(s) 2376
Cfr13I GGNCC 3 cut(s) 848, 1979, 2536
CseI GACGC 2 cut(s) 2427, 2912
CspCI CAANNNNNGTGG 2 cut(s) 925, 960
DdeI CTNAG 5 cut(s) 625, 1185, 1722, 2234, 2781
DinI GGCGCC 1 cut(s) 2732
DpnI GATC 9 cut(s) 128, 489, 1074, 1095, 1182, 2082, 2284, 2356, 3051
DpnII GATC 9 cut(s) 126, 487, 1072, 1093, 1180, 2080, 2282, 2354, 3049
DriI GACNNNNNGTC 1 cut(s) 879
EaeI YGGCCR 1 cut(s) 3017
Eam1104I CTCTTC 1 cut(s) 1275
Eam1105I GACNNNNNGTC 1 cut(s) 879
EarI CTCTTC 1 cut(s) 1275
EciI GGCGGA 1 cut(s) 1760
Eco130I CCWWGG 3 cut(s) 428, 1812, 2299
Eco147I AGGCCT 1 cut(s) 424
Eco31I GGTCTC 1 cut(s) 1772
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 848, 1979
Eco57I CTGAAG 2 cut(s) 1367, 1595
Eco72I CACGTG 1 cut(s) 2405
Eco81I CCTNAGG 1 cut(s) 1185
Eco88I CYCGRG 1 cut(s) 995
EcoO109I RGGNCCY 1 cut(s) 848
EcoRI GAATTC 1 cut(s) 826
EcoRII CCWGG 4 cut(s) 280, 853, 1519, 2538
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 3 cut(s) 428, 1812, 2299
EcoT22I ATGCAT 5 cut(s) 407, 546, 1603, 1923, 2987
EgeI GGCGCC 1 cut(s) 2732
EheI GGCGCC 1 cut(s) 2732
ErhI CCWWGG 3 cut(s) 428, 1812, 2299
FalI AAGNNNNNCTT 4 cut(s) 1484, 1516, 2618, 2650
FaqI GGGAC 1 cut(s) 2785
FauNDI CATATG 1 cut(s) 1300
FbaI TGATCA 3 cut(s) 1093, 2080, 3049
Fnu4HI GCNGC 6 cut(s) 783, 963, 1719, 2553, 2971, 3045
FokI GGATG 6 cut(s) 19, 98, 1908, 1912, 1930, 2739
Fsp4HI GCNGC 6 cut(s) 783, 963, 1719, 2553, 2971, 3045
FspBI CTAG 6 cut(s) 953, 1016, 1619, 2454, 2477, 2915
GlaI GCGC 1 cut(s) 2732
GluI GCNGC 6 cut(s) 783, 963, 1719, 2553, 2971, 3045
GsuI CTGGAG 1 cut(s) 476
HaeII RGCGCY 1 cut(s) 2734
HaeIII GGCC 4 cut(s) 424, 742, 2537, 3019
HapII CCGG 2 cut(s) 973, 2377
HgaI GACGC 2 cut(s) 2427, 2912
HhaI GCGC 1 cut(s) 2733
Hin1I GRCGYC 1 cut(s) 2731
Hin6I GCGC 1 cut(s) 2731
HinP1I GCGC 1 cut(s) 2731
HincII GTYRAC 4 cut(s) 985, 2290, 2400, 2442
HindII GTYRAC 4 cut(s) 985, 2290, 2400, 2442
HindIII AAGCTT 2 cut(s) 2564, 2714
HpaI GTTAAC 2 cut(s) 985, 2400
HpaII CCGG 2 cut(s) 973, 2377
HphI GGTGA 5 cut(s) 296, 812, 1420, 2187, 2318
Hpy166II GTNNAC 6 cut(s) 985, 1371, 1563, 2290, 2400, 2442
Hpy8I GTNNAC 6 cut(s) 985, 1371, 1563, 2290, 2400, 2442
HpyAV CCTTC 9 cut(s) 186, 607, 1342, 1405, 1478, 1860, 2056, 2344, 2620
HpyCH4III ACNGT 9 cut(s) 797, 1471, 1516, 2335, 2504, 2680, 2833, 2953, 3001
HpyCH4IV ACGT 2 cut(s) 2404, 2862
HpyF10VI GCNNNNNNNGC 5 cut(s) 723, 1838, 1891, 2393, 2549
HpyF3I CTNAG 5 cut(s) 625, 1185, 1722, 2234, 2781
HpySE526I ACGT 2 cut(s) 2404, 2862
Hsp92I GRCGYC 1 cut(s) 2731
HspAI GCGC 1 cut(s) 2731
KasI GGCGCC 1 cut(s) 2730
Kpn2I TCCGGA 1 cut(s) 972
KpnI GGTACC 1 cut(s) 1130
Ksp22I TGATCA 3 cut(s) 1093, 2080, 3049
KspAI GTTAAC 2 cut(s) 985, 2400
Kzo9I GATC 9 cut(s) 126, 487, 1072, 1093, 1180, 2080, 2282, 2354, 3049
LmnI GCTCC 2 cut(s) 937, 1342
Lsp1109I GCAGC 6 cut(s) 769, 974, 1705, 2564, 2957, 3056
LweI GCATC 4 cut(s) 1658, 1908, 1930, 2476
MaeI CTAG 6 cut(s) 953, 1016, 1619, 2454, 2477, 2915
MaeII ACGT 2 cut(s) 2404, 2862
MaeIII GTNAC 8 cut(s) 142, 155, 228, 284, 301, 990, 1037, 2456
MalI GATC 9 cut(s) 128, 489, 1074, 1095, 1182, 2082, 2284, 2356, 3051
MboI GATC 9 cut(s) 126, 487, 1072, 1093, 1180, 2080, 2282, 2354, 3049
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 3 cut(s) 934, 1887, 2814
MlsI TGGCCA 1 cut(s) 3019
MluNI TGGCCA 1 cut(s) 3019
Mly113I GGCGCC 1 cut(s) 2731
MlyI GAGTC 5 cut(s) 802, 889, 963, 2453, 2591
MmeI TCCRAC 2 cut(s) 346, 2075
Mox20I TGGCCA 1 cut(s) 3019
Mph1103I ATGCAT 5 cut(s) 407, 546, 1603, 1923, 2987
MroI TCCGGA 1 cut(s) 972
MroXI GAANNNNTTC 2 cut(s) 167, 477
MscI TGGCCA 1 cut(s) 3019
MslI CAYNNNNRTG 2 cut(s) 140, 3127
Msp20I TGGCCA 1 cut(s) 3019
MspA1I CMGCKG 3 cut(s) 2785, 2970, 3047
MspI CCGG 2 cut(s) 973, 2377
MspR9I CCNGG 4 cut(s) 282, 855, 1521, 2540
Mva1269I GAATGC 3 cut(s) 1243, 2440, 2857
MvaI CCWGG 4 cut(s) 282, 855, 1521, 2540
MvnI CGCG 1 cut(s) 2702
MwoI GCNNNNNNNGC 5 cut(s) 723, 1838, 1891, 2393, 2549
NarI GGCGCC 1 cut(s) 2731
NcoI CCATGG 1 cut(s) 1812
NdeI CATATG 1 cut(s) 1300
NdeII GATC 9 cut(s) 126, 487, 1072, 1093, 1180, 2080, 2282, 2354, 3049
NlaIV GGNNCC 5 cut(s) 128, 849, 1128, 2297, 2732
NmuCI GTSAC 5 cut(s) 142, 228, 284, 990, 2456
NsiI ATGCAT 5 cut(s) 407, 546, 1603, 1923, 2987
NspI RCATGY 3 cut(s) 544, 930, 1673
OliI CACNNNNGTG 2 cut(s) 140, 3127
PaeR7I CTCGAG 1 cut(s) 995
PagI TCATGA 1 cut(s) 3052
PceI AGGCCT 1 cut(s) 424
PciI ACATGT 1 cut(s) 926
PctI GAATGC 3 cut(s) 1243, 2440, 2857
PdmI GAANNNNTTC 2 cut(s) 167, 477
PflFI GACNNNGTC 1 cut(s) 1418
PflMI CCANNNNNTGG 1 cut(s) 365
PfoI TCCNGGA 1 cut(s) 1519
PkrI GCNGC 6 cut(s) 784, 964, 1720, 2554, 2972, 3046
PleI GAGTC 5 cut(s) 802, 888, 963, 2453, 2591
PluTI GGCGCC 1 cut(s) 2734
PmaCI CACGTG 1 cut(s) 2405
PmlI CACGTG 1 cut(s) 2405
PpsI GAGTC 5 cut(s) 802, 888, 963, 2453, 2591
Ppu21I YACGTR 1 cut(s) 2405
PpuMI RGGWCCY 1 cut(s) 848
PscI ACATGT 1 cut(s) 926
PshBI ATTAAT 2 cut(s) 839, 1604
PsiI TTATAA 2 cut(s) 2148, 2511
Psp5II RGGWCCY 1 cut(s) 848
Psp6I CCWGG 4 cut(s) 280, 853, 1519, 2538
PspCI CACGTG 1 cut(s) 2405
PspGI CCWGG 4 cut(s) 280, 853, 1519, 2538
PspN4I GGNNCC 5 cut(s) 128, 849, 1128, 2297, 2732
PspPI GGNCC 3 cut(s) 848, 1979, 2536
PspPPI RGGWCCY 1 cut(s) 848
PspXI VCTCGAGB 1 cut(s) 995
PsrI GAACNNNNNNTAC 2 cut(s) 1546, 1578
PstI CTGCAG 3 cut(s) 787, 2975, 3046
PstNI CAGNNNCTG 2 cut(s) 326, 1345
PsuI RGATCY 1 cut(s) 126
PsyI GACNNNGTC 1 cut(s) 1418
PvuII CAGCTG 2 cut(s) 2785, 3047
RseI CAYNNNNRTG 2 cut(s) 140, 3127
SatI GCNGC 6 cut(s) 783, 963, 1719, 2553, 2971, 3045
Sau3AI GATC 9 cut(s) 126, 487, 1072, 1093, 1180, 2080, 2282, 2354, 3049
Sau96I GGNCC 3 cut(s) 848, 1979, 2536
ScaI AGTACT 2 cut(s) 721, 2697
SchI GAGTC 5 cut(s) 802, 889, 963, 2453, 2591
ScrFI CCNGG 4 cut(s) 282, 855, 1521, 2540
SduI GDGCHC 3 cut(s) 934, 1887, 2814
SfaNI GCATC 4 cut(s) 1658, 1908, 1930, 2476
SfcI CTRYAG 5 cut(s) 783, 2118, 2832, 2971, 3042
SfoI GGCGCC 1 cut(s) 2732
Sfr274I CTCGAG 1 cut(s) 995
SinI GGWCC 2 cut(s) 848, 1979
SlaI CTCGAG 1 cut(s) 995
SmiMI CAYNNNNRTG 2 cut(s) 140, 3127
SmlI CTYRAG 5 cut(s) 995, 1439, 2018, 2208, 2561
SmoI CTYRAG 5 cut(s) 995, 1439, 2018, 2208, 2561
SpeI ACTAGT 1 cut(s) 2453
SseBI AGGCCT 1 cut(s) 424
SsiI CCGC 2 cut(s) 1771, 2968
SspDI GGCGCC 1 cut(s) 2730
SspI AATATT 4 cut(s) 943, 1196, 1638, 2593
SspMI CTAG 6 cut(s) 953, 1016, 1619, 2454, 2477, 2915
StuI AGGCCT 1 cut(s) 424
StyD4I CCNGG 4 cut(s) 280, 853, 1519, 2538
StyI CCWWGG 3 cut(s) 428, 1812, 2299
TaaI ACNGT 9 cut(s) 797, 1471, 1516, 2335, 2504, 2680, 2833, 2953, 3001
TaiI ACGT 2 cut(s) 2407, 2865
TaqI TCGA 6 cut(s) 212, 261, 512, 996, 2372, 2720
TatI WGTACW 7 cut(s) 719, 1368, 1562, 1643, 1911, 2695, 2796
TscAI CASTG 7 cut(s) 954, 1578, 2338, 2644, 2683, 2958, 3027
TseFI GTSAC 5 cut(s) 142, 228, 284, 990, 2456
TseI GCWGC 6 cut(s) 782, 962, 1718, 2552, 2970, 3044
Tsp45I GTSAC 5 cut(s) 142, 228, 284, 990, 2456
TspGWI ACGGA 5 cut(s) 593, 820, 2260, 2512, 3077
TspRI CASTG 7 cut(s) 954, 1578, 2338, 2644, 2683, 2958, 3027
Tth111I GACNNNGTC 1 cut(s) 1418
Van91I CCANNNNNTGG 1 cut(s) 365
VpaK11BI GGWCC 2 cut(s) 848, 1979
VspI ATTAAT 2 cut(s) 839, 1604
XceI RCATGY 3 cut(s) 544, 930, 1673
XcmI CCANNNNNNNNNTGG 1 cut(s) 1973
XhoI CTCGAG 1 cut(s) 995
XmnI GAANNNNTTC 2 cut(s) 167, 477
XspI CTAG 6 cut(s) 953, 1016, 1619, 2454, 2477, 2915
ZrmI AGTACT 2 cut(s) 721, 2697
Zsp2I ATGCAT 5 cut(s) 407, 546, 1603, 1923, 2987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.