Rroxscaffold_7G00203270

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000279
Physical Location & Seq
Reverse (-)
51870529 .. 51879518
8990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203270.1

Sequence Viewer

Length: 1164 bp
ATGTTTGGATCCTATTCCTTCATAAATATAGCCTATGGAAAAGAAGAATTTGATCGTGGGCGCAGTTTGAAAAATATGGTTGAGGTTGCTGTTGTCTATCAGATAGTTCTTAGCCTTTACGAAGAATTCAGTCGAACAAAGAAGAAGGTTAGCATTGGGGTAATATCACCTTACAAAGCCCAAGTCAATGCAATTGAAGAGAGAGTCAGAGAATACAGTACAGATCATTTAGCTGGAACTGGCTTCGTTCTAAGTGTTCGGTCTGTTGATGGATTCCAAGGAGGTGAAGAGGATGTGATAATCATCTCCACAGTTAGATGTAATGGGAATGGATCAATTGGTTTCCTTTCAAATCATCAAAGAGCAAATGTTGTACTAACACGTGCAAGGCACTGTCTTTGGATATTGGGGAATGGACTGACCTTGTCTAAGAGTAACTCTATCTGGAAGAATCTAATCATTGATGCCAAGAATCGCAATTGTTTTTACAATGCTGATGTGGACAACAACCTGTCTCAGGCTATTGCATCTGCCCTTGTGGATCATGACCACGTTCAAGTTTTATTCAATTCTGATTCTCCGCTGTTCAGAAATGCAAAATGGAAGGTTTACTTTGCCAATGAATTTAACCACTCAATTGCAAAAGCTAAAGACCCCAAGATTCGTCGGGAACTGGTTTCTCTACTGAGAAAGCTTTCAAGTGGTTGGCGCCAATCTCATGAGGCGAAATTCTATGGTAGGACTTCTTGTCAGCTGTTAGAGAAGTATCGAGTTGATGGGATCCTGAACTTGATTTGGAGTGTGGACATTCTCCAAGAGAATTCACAACATGTACAGATTATACAAGTTTGGGATATTGTGCCACATTCTGATGTTCGAAAGCTCACAAAGCGTCTTGACAACATTTTCGGGAGTTACACAGTGGATAAGGTTAATCGCTGCAAACAAAGAAGTCTTGAGGGGGACGATGTAGTTCCAATTAGATGGCCAATGGAATATTCAAGCAGTCGCAGTGAATCTGATCCTCTGGAGTTCCTTTCAACACCATTATCTTGTCTCACTCTGAGAGACGAGCCAGCTGAAAATTCAACCGCATCTTATATGAGAAATAAAGCATCCAACATGAGTGGAAAGGAGGCCACCGGATCAAAACCAAGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

387

Amino Acids

43.98

Weight (kDa)

9.06

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_12 PF13087 4 - 138 1.5e-36 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 708
AciI CCGC 2 cut(s) 581, 1092
AclWI GGATC 8 cut(s) 3, 16, 340, 549, 775, 788, 1016, 1153
AcoI YGGCCR 1 cut(s) 986
AcsI RAATTY 6 cut(s) 47, 125, 623, 728, 820, 1084
AcvI CACGTG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 709
AfaI GTAC 3 cut(s) 220, 375, 834
AfiI CCNNNNNNNGG 1 cut(s) 517
AflIII ACRYGT 2 cut(s) 380, 829
AgsI TTSAA 9 cut(s) 70, 197, 351, 557, 568, 699, 1002, 1041, 1089
AhdI GACNNNNNGTC 1 cut(s) 747
AjuI GAANNNNNNNTTGG 2 cut(s) 982, 1014
AluBI AGCT 6 cut(s) 233, 647, 694, 754, 883, 1079
AluI AGCT 6 cut(s) 233, 647, 694, 754, 883, 1079
Alw26I GTCTC 3 cut(s) 519, 1061, 1062
AlwI GGATC 8 cut(s) 3, 16, 340, 549, 775, 788, 1016, 1153
AoxI GGCC 2 cut(s) 986, 1137
ApeKI GCWGC 1 cut(s) 939
ApoI RAATTY 6 cut(s) 47, 125, 623, 728, 820, 1084
ArsI GACNNNNNNTTYG 4 cut(s) 168, 200, 890, 922
Asp700I GAANNNNTTC 1 cut(s) 694
AspLEI GCGC 2 cut(s) 63, 711
AsuHPI GGTGA 2 cut(s) 159, 296
AsuII TTCGAA 1 cut(s) 877
BalI TGGCCA 1 cut(s) 988
BamHI GGATCC 2 cut(s) 8, 780
BanI GGYRCC 1 cut(s) 708
BbrPI CACGTG 1 cut(s) 383
BbvI GCAGC 1 cut(s) 926
BccI CCATC 3 cut(s) 263, 770, 978
BcoDI GTCTC 3 cut(s) 519, 1061, 1062
BfoI RGCGCY 1 cut(s) 712
BisI GCNGC 1 cut(s) 940
BlsI GCNGC 1 cut(s) 941
BmeRI GACNNNNNGTC 1 cut(s) 747
BmiI GGNNCC 3 cut(s) 10, 710, 782
BmsI GCATC 4 cut(s) 454, 536, 1103, 1124
BpmI CTGGAG 1 cut(s) 1049
Bpu14I TTCGAA 1 cut(s) 877
BpuEI CTTGAG 1 cut(s) 977
BsaAI YACGTR 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 709
BsaJI CCNNGG 2 cut(s) 277, 1154
BsaWI WCCGGW 1 cut(s) 1142
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse1I ACTGG 2 cut(s) 244, 678
Bse8I GATNNNNATC 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 277, 1154
BseGI GGATG 2 cut(s) 298, 1115
BseJI GATNNNNATC 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMII CTCAG 3 cut(s) 530, 677, 1055
BseNI ACTGG 2 cut(s) 244, 678
BseXI GCAGC 1 cut(s) 926
BshFI GGCC 2 cut(s) 988, 1139
BshNI GGYRCC 1 cut(s) 708
BsiSI CCGG 1 cut(s) 1143
BslFI GGGAC 1 cut(s) 977
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 3 cut(s) 519, 1061, 1062
BsmBI CGTCTC 1 cut(s) 1062
BsmFI GGGAC 1 cut(s) 977
BsnI GGCC 2 cut(s) 988, 1139
Bsp119I TTCGAA 1 cut(s) 877
Bsp1407I TGTACA 1 cut(s) 832
Bsp143I GATC 8 cut(s) 8, 52, 223, 332, 541, 780, 1021, 1145
BspACI CCGC 2 cut(s) 581, 1092
BspANI GGCC 2 cut(s) 988, 1139
BspCNI CTCAG 3 cut(s) 529, 678, 1056
BspHI TCATGA 2 cut(s) 544, 718
BspLI GGNNCC 3 cut(s) 10, 710, 782
BspPI GGATC 8 cut(s) 3, 16, 340, 549, 775, 788, 1016, 1153
BspT104I TTCGAA 1 cut(s) 877
BspT107I GGYRCC 1 cut(s) 708
BsrGI TGTACA 1 cut(s) 832
BsrI ACTGG 2 cut(s) 244, 678
BssECI CCNNGG 2 cut(s) 277, 1154
BssMI GATC 8 cut(s) 8, 52, 223, 332, 541, 780, 1021, 1145
BssNI GRCGYC 1 cut(s) 709
BssT1I CCWWGG 2 cut(s) 277, 1154
Bst4CI ACNGT 4 cut(s) 218, 313, 395, 922
Bst6I CTCTTC 2 cut(s) 192, 282
BstACI GRCGYC 1 cut(s) 709
BstAUI TGTACA 1 cut(s) 832
BstBAI YACGTR 1 cut(s) 383
BstBI TTCGAA 1 cut(s) 877
BstC8I GCNNGC 1 cut(s) 1077
BstDEI CTNAG 6 cut(s) 110, 251, 429, 516, 686, 1064
BstENI CCTNNNNNAGG 1 cut(s) 515
BstF5I GGATG 2 cut(s) 298, 1115
BstH2I RGCGCY 1 cut(s) 712
BstHHI GCGC 2 cut(s) 63, 711
BstKTI GATC 8 cut(s) 11, 55, 226, 335, 544, 783, 1024, 1148
BstMAI GTCTC 3 cut(s) 519, 1061, 1062
BstMBI GATC 8 cut(s) 8, 52, 223, 332, 541, 780, 1021, 1145
BstMWI GCNNNNNNNGC 1 cut(s) 889
BstNSI RCATGY 1 cut(s) 833
BstV1I GCAGC 1 cut(s) 926
BstX2I RGATCY 2 cut(s) 8, 780
BstXI CCANNNNNNTGG 1 cut(s) 984
BstYI RGATCY 2 cut(s) 8, 780
BsuRI GGCC 2 cut(s) 988, 1139
BtsCI GGATG 2 cut(s) 298, 1115
BtsI GCAGTG 1 cut(s) 1018
BtsIMutI CAGTG 3 cut(s) 391, 927, 1018
Cac8I GCNNGC 1 cut(s) 1077
CciI TCATGA 2 cut(s) 544, 718
CfoI GCGC 2 cut(s) 63, 711
CseI GACGC 1 cut(s) 881
Csp6I GTAC 3 cut(s) 219, 374, 833
CspCI CAANNNNNGTGG 2 cut(s) 1108, 1143
CviAII CATG 4 cut(s) 545, 719, 830, 1123
CviQI GTAC 3 cut(s) 219, 374, 833
DdeI CTNAG 6 cut(s) 110, 251, 429, 516, 686, 1064
DinI GGCGCC 1 cut(s) 710
DpnI GATC 8 cut(s) 10, 54, 225, 334, 543, 782, 1023, 1147
DpnII GATC 8 cut(s) 8, 52, 223, 332, 541, 780, 1021, 1145
DriI GACNNNNNGTC 1 cut(s) 747
EaeI YGGCCR 1 cut(s) 986
Eam1104I CTCTTC 2 cut(s) 192, 282
Eam1105I GACNNNNNGTC 1 cut(s) 747
EarI CTCTTC 2 cut(s) 192, 282
Eco130I CCWWGG 2 cut(s) 277, 1154
Eco72I CACGTG 1 cut(s) 383
EcoNI CCTNNNNNAGG 1 cut(s) 515
EcoRI GAATTC 2 cut(s) 125, 820
EcoT14I CCWWGG 2 cut(s) 277, 1154
EgeI GGCGCC 1 cut(s) 710
EheI GGCGCC 1 cut(s) 710
ErhI CCWWGG 2 cut(s) 277, 1154
Esp3I CGTCTC 1 cut(s) 1062
FaeI CATG 4 cut(s) 548, 722, 833, 1126
FalI AAGNNNNNCTT 2 cut(s) 596, 628
FaqI GGGAC 1 cut(s) 977
FatI CATG 4 cut(s) 544, 718, 829, 1122
Fnu4HI GCNGC 1 cut(s) 940
FokI GGATG 2 cut(s) 305, 1102
Fsp4HI GCNGC 1 cut(s) 940
GlaI GCGC 2 cut(s) 62, 710
GluI GCNGC 1 cut(s) 940
GsuI CTGGAG 1 cut(s) 1049
HaeII RGCGCY 1 cut(s) 712
HaeIII GGCC 2 cut(s) 988, 1139
HapII CCGG 1 cut(s) 1143
HgaI GACGC 1 cut(s) 881
HhaI GCGC 2 cut(s) 63, 711
Hin1I GRCGYC 1 cut(s) 709
Hin1II CATG 4 cut(s) 548, 722, 833, 1126
Hin6I GCGC 2 cut(s) 61, 709
HinP1I GCGC 2 cut(s) 61, 709
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 7 cut(s) 204, 273, 451, 472, 575, 661, 1016
HpaII CCGG 1 cut(s) 1143
HphI GGTGA 2 cut(s) 159, 296
Hpy166II GTNNAC 3 cut(s) 502, 610, 805
Hpy188I TCNGA 7 cut(s) 102, 209, 574, 590, 871, 1021, 1065
Hpy188III TCNNGA 9 cut(s) 445, 545, 668, 719, 784, 896, 910, 956, 1028
Hpy8I GTNNAC 3 cut(s) 502, 610, 805
Hpy99I CGWCG 1 cut(s) 669
HpyAV CCTTC 3 cut(s) 28, 139, 598
HpyCH4III ACNGT 4 cut(s) 218, 313, 395, 922
HpyCH4IV ACGT 2 cut(s) 382, 552
HpyCH4V TGCA 6 cut(s) 191, 386, 527, 596, 641, 942
HpyF10VI GCNNNNNNNGC 1 cut(s) 889
HpyF3I CTNAG 6 cut(s) 110, 251, 429, 516, 686, 1064
HpySE526I ACGT 2 cut(s) 382, 552
Hsp92I GRCGYC 1 cut(s) 709
Hsp92II CATG 4 cut(s) 548, 722, 833, 1126
HspAI GCGC 2 cut(s) 61, 709
KasI GGCGCC 1 cut(s) 708
Kzo9I GATC 8 cut(s) 8, 52, 223, 332, 541, 780, 1021, 1145
Lsp1109I GCAGC 1 cut(s) 926
LweI GCATC 4 cut(s) 454, 536, 1103, 1124
MaeII ACGT 2 cut(s) 382, 552
MaeIII GTNAC 2 cut(s) 434, 914
MalI GATC 8 cut(s) 10, 54, 225, 334, 543, 782, 1023, 1147
MboI GATC 8 cut(s) 8, 52, 223, 332, 541, 780, 1021, 1145
MboII GAAGA 6 cut(s) 56, 134, 154, 209, 299, 460
MfeI CAATTG 4 cut(s) 192, 336, 478, 636
MflI RGATCY 2 cut(s) 8, 780
MlsI TGGCCA 1 cut(s) 988
MluNI TGGCCA 1 cut(s) 988
Mly113I GGCGCC 1 cut(s) 709
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 1143
MnlI CCTC 7 cut(s) 76, 275, 283, 715, 952, 1035, 1129
Mox20I TGGCCA 1 cut(s) 988
MroXI GAANNNNTTC 1 cut(s) 694
MscI TGGCCA 1 cut(s) 988
MseI TTAA 2 cut(s) 627, 933
MslI CAYNNNNRTG 1 cut(s) 870
Msp20I TGGCCA 1 cut(s) 988
MspA1I CMGCKG 3 cut(s) 583, 754, 1079
MspI CCGG 1 cut(s) 1143
MunI CAATTG 4 cut(s) 192, 336, 478, 636
MwoI GCNNNNNNNGC 1 cut(s) 889
NarI GGCGCC 1 cut(s) 709
NdeII GATC 8 cut(s) 8, 52, 223, 332, 541, 780, 1021, 1145
NlaIII CATG 4 cut(s) 548, 722, 833, 1126
NlaIV GGNNCC 3 cut(s) 10, 710, 782
NspI RCATGY 1 cut(s) 833
NspV TTCGAA 1 cut(s) 877
PagI TCATGA 2 cut(s) 544, 718
PciI ACATGT 1 cut(s) 829
PdmI GAANNNNTTC 1 cut(s) 694
PfeI GAWTC 6 cut(s) 273, 451, 472, 575, 661, 1016
PflFI GACNNNGTC 1 cut(s) 424
PkrI GCNGC 1 cut(s) 941
PleI GAGTC 1 cut(s) 212
PluTI GGCGCC 1 cut(s) 712
PmaCI CACGTG 1 cut(s) 383
PmlI CACGTG 1 cut(s) 383
PpsI GAGTC 1 cut(s) 212
Ppu21I YACGTR 1 cut(s) 383
PscI ACATGT 1 cut(s) 829
PspCI CACGTG 1 cut(s) 383
PspN4I GGNNCC 3 cut(s) 10, 710, 782
PsuI RGATCY 2 cut(s) 8, 780
PsyI GACNNNGTC 1 cut(s) 424
PvuII CAGCTG 2 cut(s) 754, 1079
RsaI GTAC 3 cut(s) 220, 375, 834
RsaNI GTAC 3 cut(s) 219, 374, 833
RseI CAYNNNNRTG 1 cut(s) 870
SaqAI TTAA 2 cut(s) 627, 933
SatI GCNGC 1 cut(s) 940
Sau3AI GATC 8 cut(s) 8, 52, 223, 332, 541, 780, 1021, 1145
SchI GAGTC 1 cut(s) 213
SfaNI GCATC 4 cut(s) 454, 536, 1103, 1124
SfoI GGCGCC 1 cut(s) 710
SfuI TTCGAA 1 cut(s) 877
SmiMI CAYNNNNRTG 1 cut(s) 870
SmlI CTYRAG 1 cut(s) 956
SmoI CTYRAG 1 cut(s) 956
SsiI CCGC 2 cut(s) 581, 1092
SspDI GGCGCC 1 cut(s) 708
SspI AATATT 1 cut(s) 998
StyI CCWWGG 2 cut(s) 277, 1154
TaaI ACNGT 4 cut(s) 218, 313, 395, 922
TaiI ACGT 2 cut(s) 385, 555
TaqI TCGA 3 cut(s) 133, 769, 877
TaqII GACCGA 1 cut(s) 249
TatI WGTACW 3 cut(s) 218, 373, 832
TfiI GAWTC 6 cut(s) 273, 451, 472, 575, 661, 1016
Tru1I TTAA 2 cut(s) 627, 933
Tru9I TTAA 2 cut(s) 627, 933
TscAI CASTG 3 cut(s) 398, 927, 1018
TseI GCWGC 1 cut(s) 939
TspDTI ATGAA 2 cut(s) 10, 636
TspRI CASTG 3 cut(s) 398, 927, 1018
Tth111I GACNNNGTC 1 cut(s) 424
XagI CCTNNNNNAGG 1 cut(s) 515
XapI RAATTY 6 cut(s) 47, 125, 623, 728, 820, 1084
XceI RCATGY 1 cut(s) 833
XmnI GAANNNNTTC 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.