Rroxscaffold_7G00203280

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000279
Physical Location & Seq
Reverse (-)
51880781 .. 51884482
3702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203280.1

Sequence Viewer

Length: 645 bp
ATGCCGGCGGGAGAATGCGAGTCGAGAAACTTTGAAGATTTGCGAGAGAAGAAGATGGAGACCGAAAGAATAAGGAAGGTAACTACGATTCTTGAGACGTTCTTGACGGTAACGAGTTACATGAGAGCATTTGTTCCTTCACTTCTTGAGGAAATACATGATGAATTACGCTCAAGCATGATGTCCCTGGCACAGGCACCAACTTGTGAAATTCTGACAGTTGAAACTTCAAAGGATCATAAACCTCCCAAAGACTTGTTTTACCAAATTACATGTGCAGAAGATTACGGAGGAGCATACGAGCCAGTTGTTGGTGATATCATTGCCTTGACCGAAGTGAGACCAAAATCCATTGATGATTTGAATAGATCCAGAAATTCTTATCTTCTTGCTTATGTTATTGGATCACAACACGGAAGTCCTGATAAGCTTCCGATACTCGCATCAAAGTCTATCAATAAAGGAGAGTCAGGAAACAAAAAGATTACCAGTAAGAGTGATACACTTTTTGCTGTTTACCTCATGAACATGACAACAAATGTACGTGTATGGAAAGCTCTGAACTCAGAATTAGGCTCAAACACAAATCTGTTTAAGAATGTTCTGCAAGTGCAACCACCAAATTCATCACATGTATTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

214

Amino Acids

24.07

Weight (kDa)

6.12

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 99 - 188 9e-11 Domain of unknown function (DUF6469)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 196
AccB7I CCANNNNNTGG 1 cut(s) 311
AciI CCGC 1 cut(s) 8
AclWI GGATC 3 cut(s) 243, 363, 412
AcsI RAATTY 3 cut(s) 210, 376, 622
AfaI GTAC 1 cut(s) 543
AfiI CCNNNNNNNGG 2 cut(s) 193, 311
AflIII ACRYGT 3 cut(s) 272, 544, 631
AgsI TTSAA 4 cut(s) 35, 224, 231, 364
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 2 cut(s) 430, 557
AluI AGCT 2 cut(s) 430, 557
Alw26I GTCTC 3 cut(s) 53, 89, 334
AlwI GGATC 3 cut(s) 243, 363, 412
ApoI RAATTY 3 cut(s) 210, 376, 622
AsuHPI GGTGA 1 cut(s) 326
BanI GGYRCC 1 cut(s) 196
BccI CCATC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 188
BcoDI GTCTC 3 cut(s) 53, 89, 334
Bme1390I CCNGG 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 452
BpuEI CTTGAG 3 cut(s) 113, 157, 167
BsaAI YACGTR 1 cut(s) 545
BsaI GGTCTC 2 cut(s) 53, 334
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 311
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 2 cut(s) 305, 489
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 193, 311
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 2 cut(s) 305, 489
BseRI GAGGAG 1 cut(s) 306
BsgI GTGCAG 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 193, 311
BsmAI GTCTC 3 cut(s) 53, 89, 334
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 20
Bso31I GGTCTC 2 cut(s) 53, 334
Bsp143I GATC 3 cut(s) 235, 368, 404
BspACI CCGC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 578
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 3 cut(s) 243, 363, 412
BspT107I GGYRCC 1 cut(s) 196
BspTNI GGTCTC 2 cut(s) 53, 334
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 2 cut(s) 305, 489
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 3 cut(s) 235, 368, 404
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 109, 220
BstBAI YACGTR 1 cut(s) 545
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 565
BstENI CCTNNNNNAGG 1 cut(s) 191
BstKTI GATC 3 cut(s) 238, 371, 407
BstMAI GTCTC 3 cut(s) 53, 89, 334
BstMBI GATC 3 cut(s) 235, 368, 404
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 2 cut(s) 276, 635
BstSCI CCNGG 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 522
Cfr10I RCCGGY 1 cut(s) 4
Csp6I GTAC 1 cut(s) 542
CviAII CATG 7 cut(s) 121, 158, 178, 273, 523, 529, 632
CviJI RGCY 4 cut(s) 304, 430, 557, 576
CviKI_1 RGCY 4 cut(s) 304, 430, 557, 576
CviQI GTAC 1 cut(s) 542
DdeI CTNAG 1 cut(s) 565
DpnI GATC 3 cut(s) 237, 370, 406
DpnII GATC 3 cut(s) 235, 368, 404
Eco31I GGTCTC 2 cut(s) 53, 334
Eco32I GATATC 1 cut(s) 319
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 186
EcoRV GATATC 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 7 cut(s) 124, 161, 181, 276, 526, 532, 635
FaqI GGGAC 1 cut(s) 169
FatI CATG 7 cut(s) 120, 157, 177, 272, 522, 528, 631
HapII CCGG 1 cut(s) 5
Hin1II CATG 7 cut(s) 124, 161, 181, 276, 526, 532, 635
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 3 cut(s) 20, 88, 467
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 5 cut(s) 216, 435, 561, 568, 644
Hpy188III TCNNGA 8 cut(s) 24, 92, 103, 146, 372, 422, 471, 523
Hpy8I GTNNAC 1 cut(s) 517
HpyAV CCTTC 2 cut(s) 70, 147
HpyCH4III ACNGT 2 cut(s) 109, 220
HpyCH4IV ACGT 2 cut(s) 98, 544
HpyCH4V TGCA 3 cut(s) 278, 607, 613
HpyF3I CTNAG 1 cut(s) 565
HpySE526I ACGT 2 cut(s) 98, 544
Hsp92II CATG 7 cut(s) 124, 161, 181, 276, 526, 532, 635
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 3 cut(s) 235, 368, 404
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 9 cut(s) 18, 173, 179, 200, 318, 385, 435, 456, 502
LweI GCATC 1 cut(s) 452
MaeII ACGT 2 cut(s) 98, 544
MaeIII GTNAC 3 cut(s) 79, 109, 116
MalI GATC 3 cut(s) 237, 370, 406
MboI GATC 3 cut(s) 235, 368, 404
MboII GAAGA 6 cut(s) 47, 61, 64, 293, 377, 631
MflI RGATCY 1 cut(s) 368
MluCI AATT 6 cut(s) 164, 210, 267, 376, 569, 622
MlyI GAGTC 2 cut(s) 29, 476
MnlI CCTC 4 cut(s) 142, 255, 284, 530
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 1 cut(s) 594
MslI CAYNNNNRTG 1 cut(s) 527
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 188
Mva1269I GAATGC 1 cut(s) 20
MvaI CCWGG 1 cut(s) 188
NaeI GCCGGC 1 cut(s) 6
NdeII GATC 3 cut(s) 235, 368, 404
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 7 cut(s) 124, 161, 181, 276, 526, 532, 635
NlaIV GGNNCC 1 cut(s) 198
NspI RCATGY 2 cut(s) 276, 635
PagI TCATGA 1 cut(s) 522
PciI ACATGT 2 cut(s) 272, 631
PctI GAATGC 1 cut(s) 20
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 88
PflMI CCANNNNNTGG 1 cut(s) 311
PleI GAGTC 2 cut(s) 28, 475
PpsI GAGTC 2 cut(s) 28, 475
Ppu21I YACGTR 1 cut(s) 545
PscI ACATGT 2 cut(s) 272, 631
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 1 cut(s) 543
RsaNI GTAC 1 cut(s) 542
RseI CAYNNNNRTG 1 cut(s) 527
SaqAI TTAA 1 cut(s) 594
Sau3AI GATC 3 cut(s) 235, 368, 404
SchI GAGTC 2 cut(s) 29, 476
ScrFI CCNGG 1 cut(s) 188
SetI ASST 7 cut(s) 81, 101, 247, 432, 522, 547, 559
SfaNI GCATC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 3 cut(s) 92, 146, 172
SmoI CTYRAG 3 cut(s) 92, 146, 172
Sse9I AATT 6 cut(s) 164, 210, 267, 376, 569, 622
SsiI CCGC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 109, 220
TaiI ACGT 2 cut(s) 101, 547
TaqI TCGA 1 cut(s) 23
TaqII GACCGA 2 cut(s) 77, 347
TasI AATT 6 cut(s) 164, 210, 267, 376, 569, 622
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TspDTI ATGAA 3 cut(s) 177, 539, 615
TspGWI ACGGA 2 cut(s) 303, 429
Van91I CCANNNNNTGG 1 cut(s) 311
XagI CCTNNNNNAGG 1 cut(s) 191
XapI RAATTY 3 cut(s) 210, 376, 622
XceI RCATGY 2 cut(s) 276, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.