AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1130 |
| AccI | GTMKAC | 3 cut(s) | 202, 265, 963 |
| AclI | AACGTT | 1 cut(s) | 996 |
| AclWI | GGATC | 1 cut(s) | 1243 |
| AcsI | RAATTY | 3 cut(s) | 58, 112, 488 |
| AcuI | CTGAAG | 1 cut(s) | 173 |
| AcvI | CACGTG | 1 cut(s) | 1148 |
| AfaI | GTAC | 2 cut(s) | 682, 890 |
| AfeI | AGCGCT | 1 cut(s) | 81 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 349, 592, 848 |
| AflII | CTTAAG | 1 cut(s) | 371 |
| AflIII | ACRYGT | 2 cut(s) | 672, 1145 |
| AjiI | CACGTC | 1 cut(s) | 707 |
| AjnI | CCWGG | 1 cut(s) | 406 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 1252 |
| AluBI | AGCT | 5 cut(s) | 365, 370, 501, 913, 1037 |
| AluI | AGCT | 5 cut(s) | 365, 370, 501, 913, 1037 |
| Alw21I | GWGCWC | 1 cut(s) | 17 |
| Alw26I | GTCTC | 1 cut(s) | 353 |
| AlwI | GGATC | 1 cut(s) | 1243 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 392 |
| Aor51HI | AGCGCT | 1 cut(s) | 81 |
| ApeKI | GCWGC | 3 cut(s) | 68, 392, 623 |
| ApoI | RAATTY | 3 cut(s) | 58, 112, 488 |
| AspLEI | GCGC | 1 cut(s) | 82 |
| AspS9I | GGNCC | 2 cut(s) | 340, 1089 |
| AsuHPI | GGTGA | 5 cut(s) | 77, 737, 831, 893, 1087 |
| AvaII | GGWCC | 2 cut(s) | 340, 1089 |
| BauI | CACGAG | 1 cut(s) | 1053 |
| BbrPI | CACGTG | 1 cut(s) | 1148 |
| BbsI | GAAGAC | 1 cut(s) | 1215 |
| Bbv12I | GWGCWC | 1 cut(s) | 17 |
| BbvI | GCAGC | 3 cut(s) | 80, 379, 610 |
| BccI | CCATC | 2 cut(s) | 722, 935 |
| BciT130I | CCWGG | 1 cut(s) | 408 |
| BclI | TGATCA | 1 cut(s) | 907 |
| BcoDI | GTCTC | 1 cut(s) | 353 |
| BfaI | CTAG | 2 cut(s) | 120, 1140 |
| BfmI | CTRYAG | 1 cut(s) | 1167 |
| BfoI | RGCGCY | 1 cut(s) | 83 |
| BfrI | CTTAAG | 1 cut(s) | 371 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 191 |
| BisI | GCNGC | 3 cut(s) | 69, 393, 624 |
| BlpI | GCTNAGC | 1 cut(s) | 366 |
| BlsI | GCNGC | 3 cut(s) | 70, 394, 625 |
| Bme1390I | CCNGG | 1 cut(s) | 408 |
| Bme18I | GGWCC | 2 cut(s) | 340, 1089 |
| BmgBI | CACGTC | 1 cut(s) | 707 |
| BmgT120I | GGNCC | 2 cut(s) | 340, 1089 |
| BmiI | GGNNCC | 2 cut(s) | 1090, 1111 |
| BmrFI | CCNGG | 1 cut(s) | 408 |
| BmsI | GCATC | 7 cut(s) | 172, 574, 610, 1142, 1153, 1180, 1192 |
| BpiI | GAAGAC | 1 cut(s) | 1215 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 366 |
| BpuEI | CTTGAG | 1 cut(s) | 283 |
| BsaAI | YACGTR | 1 cut(s) | 1148 |
| BsaBI | GATNNNNATC | 2 cut(s) | 441, 1179 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 945, 975 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 349, 592, 848 |
| Bse3DI | GCAATG | 2 cut(s) | 395, 462 |
| Bse8I | GATNNNNATC | 2 cut(s) | 441, 1179 |
| BseBI | CCWGG | 1 cut(s) | 408 |
| BseGI | GGATG | 2 cut(s) | 565, 1157 |
| BseJI | GATNNNNATC | 2 cut(s) | 441, 1179 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 349, 592, 848 |
| BseMI | GCAATG | 2 cut(s) | 395, 462 |
| BseMII | CTCAG | 2 cut(s) | 380, 1033 |
| BseRI | GAGGAG | 1 cut(s) | 969 |
| BseXI | GCAGC | 3 cut(s) | 80, 379, 610 |
| BsgI | GTGCAG | 1 cut(s) | 274 |
| BsiHKAI | GWGCWC | 1 cut(s) | 17 |
| BsiSI | CCGG | 1 cut(s) | 320 |
| BslFI | GGGAC | 4 cut(s) | 717, 723, 864, 1102 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 349, 592, 848 |
| BsmAI | GTCTC | 1 cut(s) | 353 |
| BsmFI | GGGAC | 4 cut(s) | 717, 723, 864, 1102 |
| BsmI | GAATGC | 2 cut(s) | 479, 567 |
| Bsp1286I | GDGCHC | 1 cut(s) | 17 |
| Bsp143I | GATC | 2 cut(s) | 907, 1235 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 366 |
| BspCNI | CTCAG | 2 cut(s) | 379, 1032 |
| BspLI | GGNNCC | 2 cut(s) | 1090, 1111 |
| BspPI | GGATC | 1 cut(s) | 1243 |
| BspQI | GCTCTTC | 1 cut(s) | 429 |
| BspTI | CTTAAG | 1 cut(s) | 371 |
| BsrDI | GCAATG | 2 cut(s) | 395, 462 |
| BssMI | GATC | 2 cut(s) | 907, 1235 |
| BssSI | CACGAG | 1 cut(s) | 1053 |
| Bst2BI | CACGAG | 1 cut(s) | 1053 |
| Bst2UI | CCWGG | 1 cut(s) | 408 |
| Bst4CI | ACNGT | 3 cut(s) | 89, 985, 1028 |
| Bst6I | CTCTTC | 3 cut(s) | 429, 647, 711 |
| BstAFI | CTTAAG | 1 cut(s) | 371 |
| BstBAI | YACGTR | 1 cut(s) | 1148 |
| BstC8I | GCNNGC | 2 cut(s) | 73, 453 |
| BstDEI | CTNAG | 5 cut(s) | 27, 366, 1019, 1103, 1184 |
| BstF5I | GGATG | 2 cut(s) | 565, 1157 |
| BstH2I | RGCGCY | 1 cut(s) | 83 |
| BstHHI | GCGC | 1 cut(s) | 82 |
| BstKTI | GATC | 2 cut(s) | 910, 1238 |
| BstMAI | GTCTC | 1 cut(s) | 353 |
| BstMBI | GATC | 2 cut(s) | 907, 1235 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 77, 191, 1043 |
| BstNI | CCWGG | 1 cut(s) | 408 |
| BstNSI | RCATGY | 1 cut(s) | 676 |
| BstSCI | CCNGG | 1 cut(s) | 406 |
| BstSFI | CTRYAG | 1 cut(s) | 1167 |
| BstV1I | GCAGC | 3 cut(s) | 80, 379, 610 |
| BstV2I | GAAGAC | 1 cut(s) | 1215 |
| BstX2I | RGATCY | 1 cut(s) | 1235 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 748 |
| BstYI | RGATCY | 1 cut(s) | 1235 |
| BtrI | CACGTC | 1 cut(s) | 707 |
| BtsCI | GGATG | 2 cut(s) | 565, 1157 |
| BtsIMutI | CAGTG | 2 cut(s) | 181, 615 |
| Cac8I | GCNNGC | 2 cut(s) | 73, 453 |
| CaiI | CAGNNNCTG | 1 cut(s) | 392 |
| CfoI | GCGC | 1 cut(s) | 82 |
| Cfr13I | GGNCC | 2 cut(s) | 340, 1089 |
| Csp6I | GTAC | 2 cut(s) | 681, 889 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 121, 156 |
| CviAII | CATG | 4 cut(s) | 419, 673, 748, 1195 |
| CviQI | GTAC | 2 cut(s) | 681, 889 |
| DdeI | CTNAG | 5 cut(s) | 27, 366, 1019, 1103, 1184 |
| DpnI | GATC | 2 cut(s) | 909, 1237 |
| DpnII | GATC | 2 cut(s) | 907, 1235 |
| Eam1104I | CTCTTC | 3 cut(s) | 429, 647, 711 |
| EarI | CTCTTC | 3 cut(s) | 429, 647, 711 |
| Eco47I | GGWCC | 2 cut(s) | 340, 1089 |
| Eco47III | AGCGCT | 1 cut(s) | 81 |
| Eco57I | CTGAAG | 1 cut(s) | 173 |
| Eco72I | CACGTG | 1 cut(s) | 1148 |
| EcoRI | GAATTC | 1 cut(s) | 112 |
| EcoRII | CCWGG | 1 cut(s) | 406 |
| EcoT22I | ATGCAT | 1 cut(s) | 567 |
| FaeI | CATG | 4 cut(s) | 422, 676, 751, 1198 |
| FaqI | GGGAC | 4 cut(s) | 717, 723, 864, 1102 |
| FatI | CATG | 4 cut(s) | 418, 672, 747, 1194 |
| FbaI | TGATCA | 1 cut(s) | 907 |
| FblI | GTMKAC | 3 cut(s) | 202, 265, 963 |
| Fnu4HI | GCNGC | 3 cut(s) | 69, 393, 624 |
| FokI | GGATG | 2 cut(s) | 552, 1164 |
| Fsp4HI | GCNGC | 3 cut(s) | 69, 393, 624 |
| FspBI | CTAG | 2 cut(s) | 120, 1140 |
| GlaI | GCGC | 1 cut(s) | 81 |
| GluI | GCNGC | 3 cut(s) | 69, 393, 624 |
| HaeII | RGCGCY | 1 cut(s) | 83 |
| HapII | CCGG | 1 cut(s) | 320 |
| HhaI | GCGC | 1 cut(s) | 82 |
| Hin1II | CATG | 4 cut(s) | 422, 676, 751, 1198 |
| Hin6I | GCGC | 1 cut(s) | 80 |
| HinP1I | GCGC | 1 cut(s) | 80 |
| HincII | GTYRAC | 1 cut(s) | 1000 |
| HindII | GTYRAC | 1 cut(s) | 1000 |
| HindIII | AAGCTT | 1 cut(s) | 499 |
| HinfI | GANTC | 6 cut(s) | 150, 383, 612, 1051, 1136, 1180 |
| HpaI | GTTAAC | 1 cut(s) | 1000 |
| HpaII | CCGG | 1 cut(s) | 320 |
| HphI | GGTGA | 5 cut(s) | 77, 737, 831, 893, 1087 |
| Hpy166II | GTNNAC | 5 cut(s) | 203, 266, 340, 964, 1000 |
| Hpy188I | TCNGA | 1 cut(s) | 494 |
| Hpy188III | TCNNGA | 4 cut(s) | 55, 120, 133, 635 |
| Hpy8I | GTNNAC | 5 cut(s) | 203, 266, 340, 964, 1000 |
| HpyAV | CCTTC | 3 cut(s) | 197, 353, 579 |
| HpyCH4III | ACNGT | 3 cut(s) | 89, 985, 1028 |
| HpyCH4IV | ACGT | 6 cut(s) | 706, 966, 996, 1008, 1041, 1147 |
| HpyCH4V | TGCA | 8 cut(s) | 106, 291, 395, 400, 455, 565, 626, 1058 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 77, 191, 1043 |
| HpyF3I | CTNAG | 5 cut(s) | 27, 366, 1019, 1103, 1184 |
| HpySE526I | ACGT | 6 cut(s) | 706, 966, 996, 1008, 1041, 1147 |
| Hsp92II | CATG | 4 cut(s) | 422, 676, 751, 1198 |
| HspAI | GCGC | 1 cut(s) | 80 |
| Ksp22I | TGATCA | 1 cut(s) | 907 |
| KspAI | GTTAAC | 1 cut(s) | 1000 |
| Kzo9I | GATC | 2 cut(s) | 907, 1235 |
| LguI | GCTCTTC | 1 cut(s) | 429 |
| LpnPI | CCDG | 7 cut(s) | 85, 92, 176, 333, 393, 420, 465 |
| Lsp1109I | GCAGC | 3 cut(s) | 80, 379, 610 |
| LweI | GCATC | 7 cut(s) | 172, 574, 610, 1142, 1153, 1180, 1192 |
| MaeI | CTAG | 2 cut(s) | 120, 1140 |
| MaeII | ACGT | 6 cut(s) | 706, 966, 996, 1008, 1041, 1147 |
| MaeIII | GTNAC | 3 cut(s) | 992, 1022, 1082 |
| MalI | GATC | 2 cut(s) | 909, 1237 |
| MboI | GATC | 2 cut(s) | 907, 1235 |
| MfeI | CAATTG | 1 cut(s) | 154 |
| MflI | RGATCY | 1 cut(s) | 1235 |
| MhlI | GDGCHC | 1 cut(s) | 17 |
| MluCI | AATT | 5 cut(s) | 58, 112, 154, 488, 892 |
| MlyI | GAGTC | 2 cut(s) | 1045, 1145 |
| MnlI | CCTC | 5 cut(s) | 307, 318, 463, 648, 947 |
| Mph1103I | ATGCAT | 1 cut(s) | 567 |
| MseI | TTAA | 3 cut(s) | 372, 546, 999 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1150 |
| MspCI | CTTAAG | 1 cut(s) | 371 |
| MspI | CCGG | 1 cut(s) | 320 |
| MspR9I | CCNGG | 1 cut(s) | 408 |
| MunI | CAATTG | 1 cut(s) | 154 |
| Mva1269I | GAATGC | 2 cut(s) | 479, 567 |
| MvaI | CCWGG | 1 cut(s) | 408 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 77, 191, 1043 |
| NdeII | GATC | 2 cut(s) | 907, 1235 |
| NlaIII | CATG | 4 cut(s) | 422, 676, 751, 1198 |
| NlaIV | GGNNCC | 2 cut(s) | 1090, 1111 |
| NsiI | ATGCAT | 1 cut(s) | 567 |
| NspI | RCATGY | 1 cut(s) | 676 |
| PciI | ACATGT | 1 cut(s) | 672 |
| PciSI | GCTCTTC | 1 cut(s) | 429 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 474 |
| PctI | GAATGC | 2 cut(s) | 479, 567 |
| PfeI | GAWTC | 4 cut(s) | 150, 383, 612, 1180 |
| PflFI | GACNNNGTC | 2 cut(s) | 414, 735 |
| PfoI | TCCNGGA | 1 cut(s) | 406 |
| PkrI | GCNGC | 3 cut(s) | 70, 394, 625 |
| PleI | GAGTC | 2 cut(s) | 1045, 1144 |
| PmaCI | CACGTG | 1 cut(s) | 1148 |
| PmlI | CACGTG | 1 cut(s) | 1148 |
| PpsI | GAGTC | 2 cut(s) | 1045, 1144 |
| Ppu21I | YACGTR | 1 cut(s) | 1148 |
| PscI | ACATGT | 1 cut(s) | 672 |
| PsiI | TTATAA | 1 cut(s) | 1130 |
| Psp1406I | AACGTT | 1 cut(s) | 996 |
| Psp6I | CCWGG | 1 cut(s) | 406 |
| PspCI | CACGTG | 1 cut(s) | 1148 |
| PspGI | CCWGG | 1 cut(s) | 406 |
| PspN4I | GGNNCC | 2 cut(s) | 1090, 1111 |
| PspPI | GGNCC | 2 cut(s) | 340, 1089 |
| PstNI | CAGNNNCTG | 1 cut(s) | 392 |
| PsuI | RGATCY | 1 cut(s) | 1235 |
| PsyI | GACNNNGTC | 2 cut(s) | 414, 735 |
| RsaI | GTAC | 2 cut(s) | 682, 890 |
| RsaNI | GTAC | 2 cut(s) | 681, 889 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1150 |
| SapI | GCTCTTC | 1 cut(s) | 429 |
| SaqAI | TTAA | 3 cut(s) | 372, 546, 999 |
| SatI | GCNGC | 3 cut(s) | 69, 393, 624 |
| Sau3AI | GATC | 2 cut(s) | 907, 1235 |
| Sau96I | GGNCC | 2 cut(s) | 340, 1089 |
| SchI | GAGTC | 2 cut(s) | 1045, 1145 |
| ScrFI | CCNGG | 1 cut(s) | 408 |
| SduI | GDGCHC | 1 cut(s) | 17 |
| SfaNI | GCATC | 7 cut(s) | 172, 574, 610, 1142, 1153, 1180, 1192 |
| SfcI | CTRYAG | 1 cut(s) | 1167 |
| SinI | GGWCC | 2 cut(s) | 340, 1089 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1150 |
| SmlI | CTYRAG | 2 cut(s) | 298, 371 |
| SmoI | CTYRAG | 2 cut(s) | 298, 371 |
| Sse9I | AATT | 5 cut(s) | 58, 112, 154, 488, 892 |
| SspI | AATATT | 1 cut(s) | 285 |
| SspMI | CTAG | 2 cut(s) | 120, 1140 |
| StyD4I | CCNGG | 1 cut(s) | 406 |
| TaaI | ACNGT | 3 cut(s) | 89, 985, 1028 |
| TaiI | ACGT | 6 cut(s) | 709, 969, 999, 1011, 1044, 1150 |
| TaqI | TCGA | 3 cut(s) | 559, 1226, 1244 |
| TasI | AATT | 5 cut(s) | 58, 112, 154, 488, 892 |
| TatI | WGTACW | 1 cut(s) | 888 |
| TfiI | GAWTC | 4 cut(s) | 150, 383, 612, 1180 |
| Tru1I | TTAA | 3 cut(s) | 372, 546, 999 |
| Tru9I | TTAA | 3 cut(s) | 372, 546, 999 |
| TscAI | CASTG | 2 cut(s) | 181, 622 |
| TseI | GCWGC | 3 cut(s) | 68, 392, 623 |
| TspDTI | ATGAA | 4 cut(s) | 25, 30, 258, 452 |
| TspGWI | ACGGA | 1 cut(s) | 1017 |
| TspRI | CASTG | 2 cut(s) | 181, 622 |
| Tth111I | GACNNNGTC | 2 cut(s) | 414, 735 |
| Vha464I | CTTAAG | 1 cut(s) | 371 |
| VpaK11BI | GGWCC | 2 cut(s) | 340, 1089 |
| XapI | RAATTY | 3 cut(s) | 58, 112, 488 |
| XbaI | TCTAGA | 1 cut(s) | 119 |
| XceI | RCATGY | 1 cut(s) | 676 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 875 |
| XmiI | GTMKAC | 3 cut(s) | 202, 265, 963 |
| XspI | CTAG | 2 cut(s) | 120, 1140 |
| Zsp2I | ATGCAT | 1 cut(s) | 567 |