AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 939 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2907 |
| AccB1I | GGYRCC | 2 cut(s) | 232, 2664 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 356, 563, 697, 839 |
| AccII | CGCG | 1 cut(s) | 229 |
| AciI | CCGC | 5 cut(s) | 229, 1578, 2177, 2215, 3099 |
| AcoI | YGGCCR | 1 cut(s) | 2942 |
| AcuI | CTGAAG | 1 cut(s) | 1325 |
| AcvI | CACGTG | 1 cut(s) | 2339 |
| AcyI | GRCGYC | 1 cut(s) | 2665 |
| AdeI | CACNNNGTG | 2 cut(s) | 456, 1496 |
| AfaI | GTAC | 3 cut(s) | 1328, 1576, 2331 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 228, 229, 356, 532, 563, 682, 697, 839 |
| AflIII | ACRYGT | 2 cut(s) | 821, 2336 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 582, 835, 2703 |
| AhlI | ACTAGT | 1 cut(s) | 1798 |
| AjnI | CCWGG | 3 cut(s) | 111, 556, 1690 |
| Alw21I | GWGCWC | 1 cut(s) | 968 |
| Alw26I | GTCTC | 4 cut(s) | 125, 313, 2475, 3017 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 563 |
| AoxI | GGCC | 4 cut(s) | 446, 2679, 2942, 3093 |
| ApeKI | GCWGC | 5 cut(s) | 423, 485, 1646, 2045, 2895 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2124, 2156, 2846, 2878 |
| AseI | ATTAAT | 2 cut(s) | 1245, 1389 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1449, 1940 |
| AspLEI | GCGC | 2 cut(s) | 635, 2667 |
| AspS9I | GGNCC | 5 cut(s) | 447, 551, 1027, 1459, 1907 |
| AsuHPI | GGTGA | 7 cut(s) | 371, 515, 992, 1118, 1214, 2115, 2252 |
| AsuII | TTCGAA | 1 cut(s) | 1791 |
| AvaII | GGWCC | 4 cut(s) | 551, 1027, 1459, 1907 |
| BaeGI | GKGCMC | 1 cut(s) | 235 |
| BalI | TGGCCA | 1 cut(s) | 2944 |
| BamHI | GGATCC | 3 cut(s) | 883, 1964, 2736 |
| BanI | GGYRCC | 2 cut(s) | 232, 2664 |
| BanII | GRGCYC | 1 cut(s) | 968 |
| BbrPI | CACGTG | 1 cut(s) | 2339 |
| BbsI | GAAGAC | 2 cut(s) | 55, 1212 |
| Bbv12I | GWGCWC | 1 cut(s) | 968 |
| BbvI | GCAGC | 5 cut(s) | 410, 472, 1633, 2032, 2882 |
| BceAI | ACGGC | 1 cut(s) | 686 |
| BciT130I | CCWGG | 3 cut(s) | 113, 558, 1692 |
| BclI | TGATCA | 1 cut(s) | 382 |
| BcoDI | GTCTC | 4 cut(s) | 125, 313, 2475, 3017 |
| BcuI | ACTAGT | 1 cut(s) | 1798 |
| BfaI | CTAG | 4 cut(s) | 441, 1440, 1799, 3136 |
| BfmI | CTRYAG | 2 cut(s) | 486, 2896 |
| BfoI | RGCGCY | 1 cut(s) | 2668 |
| BisI | GCNGC | 5 cut(s) | 424, 486, 1647, 2046, 2896 |
| BlpI | GCTNAGC | 2 cut(s) | 967, 1650 |
| BlsI | GCNGC | 5 cut(s) | 425, 487, 1648, 2047, 2897 |
| Bme1390I | CCNGG | 3 cut(s) | 113, 558, 1692 |
| Bme18I | GGWCC | 4 cut(s) | 551, 1027, 1459, 1907 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 582, 835, 2703 |
| BmgT120I | GGNCC | 5 cut(s) | 447, 551, 1027, 1459, 1907 |
| BmiI | GGNNCC | 8 cut(s) | 234, 552, 674, 885, 1029, 1966, 2666, 2738 |
| BmrFI | CCNGG | 3 cut(s) | 113, 558, 1692 |
| BmsI | GCATC | 7 cut(s) | 1178, 1589, 1858, 2410, 2492, 3080, 3110 |
| BpiI | GAAGAC | 2 cut(s) | 55, 1212 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 122, 154 |
| BpmI | CTGGAG | 2 cut(s) | 540, 3005 |
| Bpu10I | CCTNAGC | 1 cut(s) | 429 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 967, 1650 |
| Bpu14I | TTCGAA | 1 cut(s) | 1791 |
| BpuEI | CTTGAG | 9 cut(s) | 193, 203, 803, 878, 899, 1151, 1418, 1967, 2933 |
| BsaAI | YACGTR | 1 cut(s) | 2339 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2258 |
| BsaHI | GRCGYC | 1 cut(s) | 2665 |
| BsaJI | CCNNGG | 3 cut(s) | 267, 557, 2233 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 619, 649, 1139, 1169 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 228, 229, 356, 532, 563, 682, 697, 839 |
| Bse1I | ACTGG | 6 cut(s) | 568, 691, 1626, 1837, 2200, 2945 |
| Bse3DI | GCAATG | 2 cut(s) | 366, 1434 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2258 |
| BseBI | CCWGG | 3 cut(s) | 113, 558, 1692 |
| BseDI | CCNNGG | 3 cut(s) | 267, 557, 2233 |
| BseGI | GGATG | 3 cut(s) | 753, 1849, 3071 |
| BseJI | GATNNNNATC | 1 cut(s) | 2258 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 228, 229, 356, 532, 563, 682, 697, 839 |
| BseMI | GCAATG | 2 cut(s) | 366, 1434 |
| BseMII | CTCAG | 9 cut(s) | 120, 420, 668, 981, 1475, 1664, 1752, 2486, 3011 |
| BseNI | ACTGG | 6 cut(s) | 568, 691, 1626, 1837, 2200, 2945 |
| BseRI | GAGGAG | 3 cut(s) | 331, 1148, 1277 |
| BseSI | GKGCMC | 1 cut(s) | 235 |
| BseXI | GCAGC | 5 cut(s) | 410, 472, 1633, 2032, 2882 |
| BseYI | CCCAGC | 1 cut(s) | 3116 |
| BsgI | GTGCAG | 1 cut(s) | 637 |
| Bsh1236I | CGCG | 1 cut(s) | 229 |
| BshFI | GGCC | 4 cut(s) | 448, 2681, 2944, 3095 |
| BshNI | GGYRCC | 2 cut(s) | 232, 2664 |
| BsiHKAI | GWGCWC | 1 cut(s) | 968 |
| BslFI | GGGAC | 5 cut(s) | 205, 574, 1824, 2933, 3038 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 228, 229, 356, 532, 563, 682, 697, 839 |
| BsmAI | GTCTC | 4 cut(s) | 125, 313, 2475, 3017 |
| BsmBI | CGTCTC | 1 cut(s) | 125 |
| BsmFI | GGGAC | 5 cut(s) | 205, 574, 1824, 2933, 3038 |
| BsmI | GAATGC | 2 cut(s) | 1695, 1851 |
| BsnI | GGCC | 4 cut(s) | 448, 2681, 2944, 3095 |
| Bsp119I | TTCGAA | 1 cut(s) | 1791 |
| Bsp1286I | GDGCHC | 2 cut(s) | 235, 968 |
| Bsp1407I | TGTACA | 1 cut(s) | 1326 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 967, 1650 |
| BspACI | CCGC | 5 cut(s) | 229, 1578, 2177, 2215, 3099 |
| BspANI | GGCC | 4 cut(s) | 448, 2681, 2944, 3095 |
| BspCNI | CTCAG | 9 cut(s) | 121, 421, 669, 980, 1476, 1663, 1753, 2485, 3012 |
| BspFNI | CGCG | 1 cut(s) | 229 |
| BspLI | GGNNCC | 8 cut(s) | 234, 552, 674, 885, 1029, 1966, 2666, 2738 |
| BspMAI | CTGCAG | 2 cut(s) | 490, 2900 |
| BspT104I | TTCGAA | 1 cut(s) | 1791 |
| BspT107I | GGYRCC | 2 cut(s) | 232, 2664 |
| BsrDI | GCAATG | 2 cut(s) | 366, 1434 |
| BsrGI | TGTACA | 1 cut(s) | 1326 |
| BsrI | ACTGG | 6 cut(s) | 568, 691, 1626, 1837, 2200, 2945 |
| BssECI | CCNNGG | 3 cut(s) | 267, 557, 2233 |
| BssNI | GRCGYC | 1 cut(s) | 2665 |
| BssT1I | CCWWGG | 2 cut(s) | 267, 2233 |
| Bst2UI | CCWGG | 3 cut(s) | 113, 558, 1692 |
| Bst6I | CTCTTC | 2 cut(s) | 2148, 2238 |
| BstACI | GRCGYC | 1 cut(s) | 2665 |
| BstAUI | TGTACA | 1 cut(s) | 1326 |
| BstBAI | YACGTR | 1 cut(s) | 2339 |
| BstBI | TTCGAA | 1 cut(s) | 1791 |
| BstC8I | GCNNGC | 3 cut(s) | 231, 1561, 3033 |
| BstF5I | GGATG | 3 cut(s) | 753, 1849, 3071 |
| BstFNI | CGCG | 1 cut(s) | 229 |
| BstH2I | RGCGCY | 1 cut(s) | 2668 |
| BstHHI | GCGC | 2 cut(s) | 635, 2667 |
| BstMAI | GTCTC | 4 cut(s) | 125, 313, 2475, 3017 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1766 |
| BstNI | CCWGG | 3 cut(s) | 113, 558, 1692 |
| BstNSI | RCATGY | 3 cut(s) | 633, 825, 1706 |
| BstSCI | CCNGG | 3 cut(s) | 111, 556, 1690 |
| BstSFI | CTRYAG | 2 cut(s) | 486, 2896 |
| BstSLI | GKGCMC | 1 cut(s) | 235 |
| BstUI | CGCG | 1 cut(s) | 229 |
| BstV1I | GCAGC | 5 cut(s) | 410, 472, 1633, 2032, 2882 |
| BstV2I | GAAGAC | 2 cut(s) | 55, 1212 |
| BstX2I | RGATCY | 4 cut(s) | 883, 1964, 2497, 2736 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2940 |
| BstYI | RGATCY | 4 cut(s) | 883, 1964, 2497, 2736 |
| BsuRI | GGCC | 4 cut(s) | 448, 2681, 2944, 3095 |
| BtgZI | GCGATG | 1 cut(s) | 2578 |
| BtsCI | GGATG | 3 cut(s) | 753, 1849, 3071 |
| BtsI | GCAGTG | 2 cut(s) | 1160, 2974 |
| Cac8I | GCNNGC | 3 cut(s) | 231, 1561, 3033 |
| CaiI | CAGNNNCTG | 1 cut(s) | 563 |
| CfoI | GCGC | 2 cut(s) | 635, 2667 |
| Cfr13I | GGNCC | 5 cut(s) | 447, 551, 1027, 1459, 1907 |
| CseI | GACGC | 1 cut(s) | 2837 |
| CsiI | ACCWGGT | 1 cut(s) | 111 |
| Csp6I | GTAC | 3 cut(s) | 1327, 1575, 2330 |
| CspCI | CAANNNNNGTGG | 5 cut(s) | 30, 808, 843, 3064, 3099 |
| CviQI | GTAC | 3 cut(s) | 1327, 1575, 2330 |
| DinI | GGCGCC | 1 cut(s) | 2666 |
| DraIII | CACNNNGTG | 2 cut(s) | 456, 1496 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2907 |
| DriI | GACNNNNNGTC | 3 cut(s) | 582, 835, 2703 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2907 |
| EaeI | YGGCCR | 1 cut(s) | 2942 |
| Eam1104I | CTCTTC | 2 cut(s) | 2148, 2238 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 582, 835, 2703 |
| EarI | CTCTTC | 2 cut(s) | 2148, 2238 |
| Ecl136II | GAGCTC | 1 cut(s) | 966 |
| Eco130I | CCWWGG | 2 cut(s) | 267, 2233 |
| Eco24I | GRGCYC | 1 cut(s) | 968 |
| Eco32I | GATATC | 1 cut(s) | 1899 |
| Eco47I | GGWCC | 4 cut(s) | 551, 1027, 1459, 1907 |
| Eco53kI | GAGCTC | 1 cut(s) | 966 |
| Eco57I | CTGAAG | 1 cut(s) | 1325 |
| Eco72I | CACGTG | 1 cut(s) | 2339 |
| EcoICRI | GAGCTC | 1 cut(s) | 966 |
| EcoO109I | RGGNCCY | 2 cut(s) | 551, 1027 |
| EcoRI | GAATTC | 3 cut(s) | 388, 2081, 2776 |
| EcoRII | CCWGG | 3 cut(s) | 111, 556, 1690 |
| EcoRV | GATATC | 1 cut(s) | 1899 |
| EcoT14I | CCWWGG | 2 cut(s) | 267, 2233 |
| EcoT22I | ATGCAT | 2 cut(s) | 1851, 3073 |
| EcoT38I | GRGCYC | 1 cut(s) | 968 |
| EgeI | GGCGCC | 1 cut(s) | 2666 |
| EheI | GGCGCC | 1 cut(s) | 2666 |
| ErhI | CCWWGG | 2 cut(s) | 267, 2233 |
| Esp3I | CGTCTC | 1 cut(s) | 125 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2552, 2584 |
| FaqI | GGGAC | 5 cut(s) | 205, 574, 1824, 2933, 3038 |
| FauI | CCCGC | 1 cut(s) | 222 |
| FauNDI | CATATG | 1 cut(s) | 343 |
| FbaI | TGATCA | 1 cut(s) | 382 |
| Fnu4HI | GCNGC | 5 cut(s) | 424, 486, 1647, 2046, 2896 |
| FokI | GGATG | 3 cut(s) | 760, 1836, 3058 |
| FriOI | GRGCYC | 1 cut(s) | 968 |
| Fsp4HI | GCNGC | 5 cut(s) | 424, 486, 1647, 2046, 2896 |
| FspBI | CTAG | 4 cut(s) | 441, 1440, 1799, 3136 |
| GlaI | GCGC | 2 cut(s) | 634, 2666 |
| GluI | GCNGC | 5 cut(s) | 424, 486, 1647, 2046, 2896 |
| GsaI | CCCAGC | 1 cut(s) | 3120 |
| GsuI | CTGGAG | 2 cut(s) | 540, 3005 |
| HaeII | RGCGCY | 1 cut(s) | 2668 |
| HaeIII | GGCC | 4 cut(s) | 448, 2681, 2944, 3095 |
| HgaI | GACGC | 1 cut(s) | 2837 |
| HhaI | GCGC | 2 cut(s) | 635, 2667 |
| Hin1I | GRCGYC | 1 cut(s) | 2665 |
| Hin6I | GCGC | 2 cut(s) | 633, 2665 |
| HinP1I | GCGC | 2 cut(s) | 633, 2665 |
| HincII | GTYRAC | 1 cut(s) | 688 |
| HindII | GTYRAC | 1 cut(s) | 688 |
| HindIII | AAGCTT | 2 cut(s) | 1783, 2648 |
| HpaI | GTTAAC | 1 cut(s) | 688 |
| HphI | GGTGA | 7 cut(s) | 371, 515, 992, 1118, 1214, 2115, 2252 |
| Hpy166II | GTNNAC | 7 cut(s) | 688, 819, 1329, 2015, 2566, 2761, 2881 |
| Hpy8I | GTNNAC | 7 cut(s) | 688, 819, 1329, 2015, 2566, 2761, 2881 |
| Hpy99I | CGWCG | 2 cut(s) | 145, 2625 |
| HpyCH4IV | ACGT | 5 cut(s) | 134, 998, 1256, 2338, 2922 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1766 |
| HpySE526I | ACGT | 5 cut(s) | 134, 998, 1256, 2338, 2922 |
| Hsp92I | GRCGYC | 1 cut(s) | 2665 |
| HspAI | GCGC | 2 cut(s) | 633, 2665 |
| KasI | GGCGCC | 1 cut(s) | 2664 |
| Ksp22I | TGATCA | 1 cut(s) | 382 |
| KspAI | GTTAAC | 1 cut(s) | 688 |
| LmnI | GCTCC | 6 cut(s) | 45, 338, 640, 678, 963, 1926 |
| Lsp1109I | GCAGC | 5 cut(s) | 410, 472, 1633, 2032, 2882 |
| LweI | GCATC | 7 cut(s) | 1178, 1589, 1858, 2410, 2492, 3080, 3110 |
| MabI | ACCWGGT | 1 cut(s) | 111 |
| MaeI | CTAG | 4 cut(s) | 441, 1440, 1799, 3136 |
| MaeII | ACGT | 5 cut(s) | 134, 998, 1256, 2338, 2922 |
| MfeI | CAATTG | 5 cut(s) | 579, 1454, 1468, 2148, 2434 |
| MflI | RGATCY | 4 cut(s) | 883, 1964, 2497, 2736 |
| MhlI | GDGCHC | 2 cut(s) | 235, 968 |
| MlsI | TGGCCA | 1 cut(s) | 2944 |
| MluNI | TGGCCA | 1 cut(s) | 2944 |
| Mly113I | GGCGCC | 1 cut(s) | 2665 |
| MlyI | GAGTC | 2 cut(s) | 869, 1409 |
| MmeI | TCCRAC | 3 cut(s) | 824, 1535, 3099 |
| Mox20I | TGGCCA | 1 cut(s) | 2944 |
| Mph1103I | ATGCAT | 2 cut(s) | 1851, 3073 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1449, 1940 |
| MscI | TGGCCA | 1 cut(s) | 2944 |
| MslI | CAYNNNNRTG | 3 cut(s) | 628, 1417, 2826 |
| Msp20I | TGGCCA | 1 cut(s) | 2944 |
| MspA1I | CMGCKG | 2 cut(s) | 2710, 3035 |
| MspR9I | CCNGG | 3 cut(s) | 113, 558, 1692 |
| MunI | CAATTG | 5 cut(s) | 579, 1454, 1468, 2148, 2434 |
| Mva1269I | GAATGC | 2 cut(s) | 1695, 1851 |
| MvaI | CCWGG | 3 cut(s) | 113, 558, 1692 |
| MvnI | CGCG | 1 cut(s) | 229 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1766 |
| NarI | GGCGCC | 1 cut(s) | 2665 |
| NdeI | CATATG | 1 cut(s) | 343 |
| NlaIV | GGNNCC | 8 cut(s) | 234, 552, 674, 885, 1029, 1966, 2666, 2738 |
| NmuCI | GTSAC | 4 cut(s) | 588, 661, 1488, 2817 |
| NsiI | ATGCAT | 2 cut(s) | 1851, 3073 |
| NspI | RCATGY | 3 cut(s) | 633, 825, 1706 |
| NspV | TTCGAA | 1 cut(s) | 1791 |
| PciI | ACATGT | 1 cut(s) | 821 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 146 |
| PctI | GAATGC | 2 cut(s) | 1695, 1851 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1449, 1940 |
| PflFI | GACNNNGTC | 1 cut(s) | 2380 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 356, 563, 697, 839 |
| PkrI | GCNGC | 5 cut(s) | 425, 487, 1648, 2047, 2897 |
| PleI | GAGTC | 2 cut(s) | 868, 1408 |
| PluTI | GGCGCC | 1 cut(s) | 2668 |
| PmaCI | CACGTG | 1 cut(s) | 2339 |
| PmlI | CACGTG | 1 cut(s) | 2339 |
| PpsI | GAGTC | 2 cut(s) | 868, 1408 |
| Ppu21I | YACGTR | 1 cut(s) | 2339 |
| PpuMI | RGGWCCY | 2 cut(s) | 551, 1027 |
| PscI | ACATGT | 1 cut(s) | 821 |
| PshBI | ATTAAT | 2 cut(s) | 1245, 1389 |
| PsiI | TTATAA | 1 cut(s) | 939 |
| Psp124BI | GAGCTC | 1 cut(s) | 968 |
| Psp5II | RGGWCCY | 2 cut(s) | 551, 1027 |
| Psp6I | CCWGG | 3 cut(s) | 111, 556, 1690 |
| PspCI | CACGTG | 1 cut(s) | 2339 |
| PspFI | CCCAGC | 1 cut(s) | 3116 |
| PspGI | CCWGG | 3 cut(s) | 111, 556, 1690 |
| PspN4I | GGNNCC | 8 cut(s) | 234, 552, 674, 885, 1029, 1966, 2666, 2738 |
| PspPI | GGNCC | 5 cut(s) | 447, 551, 1027, 1459, 1907 |
| PspPPI | RGGWCCY | 2 cut(s) | 551, 1027 |
| PstI | CTGCAG | 2 cut(s) | 490, 2900 |
| PstNI | CAGNNNCTG | 1 cut(s) | 563 |
| PsuI | RGATCY | 4 cut(s) | 883, 1964, 2497, 2736 |
| PsyI | GACNNNGTC | 1 cut(s) | 2380 |
| PvuII | CAGCTG | 2 cut(s) | 2710, 3035 |
| RsaI | GTAC | 3 cut(s) | 1328, 1576, 2331 |
| RsaNI | GTAC | 3 cut(s) | 1327, 1575, 2330 |
| RseI | CAYNNNNRTG | 3 cut(s) | 628, 1417, 2826 |
| SacI | GAGCTC | 1 cut(s) | 968 |
| SatI | GCNGC | 5 cut(s) | 424, 486, 1647, 2046, 2896 |
| Sau96I | GGNCC | 5 cut(s) | 447, 551, 1027, 1459, 1907 |
| SchI | GAGTC | 2 cut(s) | 869, 1409 |
| ScrFI | CCNGG | 3 cut(s) | 113, 558, 1692 |
| SduI | GDGCHC | 2 cut(s) | 235, 968 |
| SexAI | ACCWGGT | 1 cut(s) | 111 |
| SfaNI | GCATC | 7 cut(s) | 1178, 1589, 1858, 2410, 2492, 3080, 3110 |
| SfcI | CTRYAG | 2 cut(s) | 486, 2896 |
| SfoI | GGCGCC | 1 cut(s) | 2666 |
| SfuI | TTCGAA | 1 cut(s) | 1791 |
| SinI | GGWCC | 4 cut(s) | 551, 1027, 1459, 1907 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 628, 1417, 2826 |
| SmlI | CTYRAG | 9 cut(s) | 182, 208, 782, 857, 878, 1130, 1397, 1946, 2912 |
| SmoI | CTYRAG | 9 cut(s) | 182, 208, 782, 857, 878, 1130, 1397, 1946, 2912 |
| SpeI | ACTAGT | 1 cut(s) | 1798 |
| SsiI | CCGC | 5 cut(s) | 229, 1578, 2177, 2215, 3099 |
| SspDI | GGCGCC | 1 cut(s) | 2664 |
| SspI | AATATT | 2 cut(s) | 1569, 2954 |
| SspMI | CTAG | 4 cut(s) | 441, 1440, 1799, 3136 |
| SstI | GAGCTC | 1 cut(s) | 968 |
| StyD4I | CCNGG | 3 cut(s) | 111, 556, 1690 |
| StyI | CCWWGG | 2 cut(s) | 267, 2233 |
| TaiI | ACGT | 5 cut(s) | 137, 1001, 1259, 2341, 2925 |
| TaqI | TCGA | 4 cut(s) | 140, 1699, 1791, 1843 |
| TatI | WGTACW | 2 cut(s) | 1326, 2329 |
| TseFI | GTSAC | 4 cut(s) | 588, 661, 1488, 2817 |
| TseI | GCWGC | 5 cut(s) | 423, 485, 1646, 2045, 2895 |
| Tsp45I | GTSAC | 4 cut(s) | 588, 661, 1488, 2817 |
| TspGWI | ACGGA | 1 cut(s) | 1619 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2380 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 356, 563, 697, 839 |
| VpaK11BI | GGWCC | 4 cut(s) | 551, 1027, 1459, 1907 |
| VspI | ATTAAT | 2 cut(s) | 1245, 1389 |
| XceI | RCATGY | 3 cut(s) | 633, 825, 1706 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 840 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1449, 1940 |
| XspI | CTAG | 4 cut(s) | 441, 1440, 1799, 3136 |
| Zsp2I | ATGCAT | 2 cut(s) | 1851, 3073 |