RchiOBHm_Chr3g0488061

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000279
Physical Location & Seq
Forward (+)
35596923 .. 35604035
7113 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45246

Sequence Viewer

Length: 3435 bp
ATGGGGATGAAGAGTAAGCTGAAACAGGAACAAGTTGCAGATACAAGAAGCCTTGTGGGTTTGGTATTCTCTTGGTCTATAAGGGATGTTCTCAATGAAAACCTTTACAGAAATCAGGTGCAGAGGATCCCCGACACATTTGTGACATTGACGAGTTACAAGAAATCATTCATTCCTTCACTTGTTGAGGAAACTCATGCTGATTTACTATCGAATATGTTGAATCTGTCACAAGCACCTACTTGTGAAATTCTGACAATCGAAGATTCAGATGGAACTCCTGGTGACTTGCTTTACGATGTAACATATCAGAGAGATACAGAAACTGATGAGAATCACAAAGGACTGATGTATGAGCCACAGGTTGGAGATATCATTGCCTTGACTAATGTTAGACCAAAATGCATTGATGATTTGAACAGGCCTCCAAGGTTCTATCTAATCGCTCATGTTGATAAAGCAAATGATATTGAAGAATTTCCTGATGATCTCCAGTTCAAAATACTATCATCGAAGCCTATCAACTATGGAGAACCAGACATGCATAAGAGCAAGAGAGAGACACTTTTTGCTGTCTATCTTATGAACTTGACAACAAATCTCCGTGTATGGAAGGCTTTGAACTCAGAGGGAAATACAAATATCATTAACAAAGTTCTGCAACCCAAGTCAGATGATGGGGATTCTTGTTCTGTTTGCTTTTCCAAAGAAAAATGCAATGCTGGCATTTCTGCATTATGGCCTACAATTTGCTCTCAAAATCTAAATGAATCCCAAGAAGCTGCAGTTTTGAACTGTATCAATTTGACTCAATGCCATCACCAGAATTCCGTAAAATTAATATGGGGTCCTCCTGGTACTGGCAAGACGAAGACAATGAGTCTGACACTCTTTGCTCTCTTTCAGTTAAAGTGCAGAACTCTCACATGTGCTCCCACCAATATTGCGGTGCTAGAAGTAGCAGCAAGACTCCGGAGATTGGTTAACCAGTCACTCGAGTATGGCAGGTATGGACTAGGAGATATAGTTCTCTTTGGTAACAAGAAGCGAATGAAGATTGACAATAATGATGATGTTCGTGATATATTTCTTGATCATCGTGTTAAAATTCTCATCAAGTGTTTGGTACCTTTATCTGGGTGGAAACATTTGTTAGAATCAATGATACATTTACTTGATGATCCTGAGGAACAATATTCTTTGTACTTGGAAAACAGAGCTAAAGAGCAGAAACAGAATGCACAAAAACATGAGGATAATCAAAAACATAATGGAGATGAGGATTATCCTTTGACATATGAGGAGTTTGTAAAGAATGAATTTGATTCAATCAGTCAGGAGCTGAAGGTTTGTATGGTAGATTTGTACACCCACTTACCAACTTGTTGCATTTCACTTAAAGTGGTGAAGGACATGGTCAGAGCTTTGGGTTTGCTCAAGTCTATTAAATCTTCATTGCATACTACTGTTGTTGCTAATGAAGGGTTGAAGTTAGTCTTCAAAGATTCCAAAGTTCCAGGAAGCATTGTTGGTTGCCTTACGCAGTTGAGAACAGAGTGTACAAACACACTGAAGTCGCTTCCTATTAACAAATATGCATTAATGAACTTCTGCCTAGAAAATGCTTGCTTAATATTCTGTACTGCATCAACTTCTTCCAAATTGCATGTTGTAGCAGGAACAAGACCGTTGGAATTGTTGGTCATTGATGAAGCTGCTCAGCTTAAAGAATGTGAATCAGCAATTCCTTTACAACTATCTGGTCTCCGCCATGCTATCCTTGTAGGAGATGAGAGGCAACTCCCTGCCATGGTTAAAAGCGAGATTGCAGTAAGTGCTGATTTTGGAAGAAGTTTGTTTGGAAGGCTGGCAAAGTTGGGGCACAAGAAGCACCTACTCAATGTCCAGTACAGGATGCATCCATCCATCAATTTATTTCCAAAAAGGGAGTTCTATGACAACCAGATAGTAGATGGTCCAAATGTCAAAGAAAGAAGCTATGAGAGGTGCTTCCTCAAGGGAAAAATGTACCAATCCTATTCCTTCATAAATGTAGCCGATGGAAAAGAAGAATTTGATCACAGATTTAGTCGGAAAAATATGGTGGAGGTTGCTGTAGTCTCTGGGATAGTAGCAAGCCTTTATAAAGAATTTATTGGAACAAAGAAGAAAGTTAGTATTGGGGTCATATCACCATACAAGGCTCAAGTTTATGCAATTCAAGAGATACTCAGAAAATATACTGAAACTTCTGATACTGGATTCTCCGTAAGTGTGCGATCTGTTGACGGGTTCCAAGGTGGTGAAGAAGATGTGATAATTATATCTACTGTCCGATGTAATGGGAAGGGGTCAGTTGGTTTCTTGTCGAACCGGCAAAGAGCAAATGTTGCGTTAACACGTGCAAGGTATTGCCTTTGGATATTGGGGAATGCGTCAACTTTGATTACTAGTGACTCTGTTTGGAAGAAGCTAGTCCTTGATGCCAAGAAACGGAACTGTTTTTATAATGCTGATGAAGACACCGACTTGGCCCAGGCTATTACAGCAGCCCTGCTCAAGCTTGACCAACTTCATTCTCTGCTTAATATCGACTCTATGCTGTTCAAAAACGCTATATGGAAGGTTTGCTTCACTGATGACTTTCGGAACTCCATAATAAAAATTAAAGACACTGTGATTCTTCGGGAAGTACTCGCGTTATTAACCAAGCTTTCGAGTGGATGGCGCCGACCTCACAAGGATAAAGGAAATTTAGTGTATGATGGGACTTCTGCTCAGCTGTTAGAGAAGTATAAAATCAAAGGGCACTTGAATCTCATTTGGACTGTAGATATTCTCCAGGAGAATGCACATTACGTCCAAGTTATGAAGTTTTGGGATATTTTGCCATTTTCTCATATACCAGAACTAGCAAAGCGTCTTGACATTGTTTTTGGAAATTTTACAGTGGATAAGATGAACCGCTGCAGGCACAAATGCATTGACAGGGATACTGTTGTTCCAATGAGATGGCCGGTGGTTTTCAGAAATTTTCCTGCAGCTGATCATGAGGAGTTCCTTTCAAAACCATTGTCTTCTTTCCGTATAACTACTAATCGAGAAACAGCAACTTCAACACATGGGGGGACAGCGAAAGCAGTAAATCCGATTATCTGTTCGAAAAGCAACGTCAATAAAAAAGAAAGATGGTTATGGAAAATAAAGGCTGAAGACAAAGTGAAGGAGCTCAGCACTTGCCTTGAAGCTGACCCTGTGGAGTTCTTTTCAAAACCATTATCATCACTAAGTATAGCAGAGAAGCCAGAAGCATCTACTTCCACTGACATATCCACAGCGATTGGATCATGCCTTTCCAGTACTCCTCAAAGTCGTTCAAAAAGCAATGCGAATCGAAGGAGATCATCATCAAAACTAAAAGTCTTTAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

1144

Amino Acids

129.33

Weight (kDa)

8.77

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 80 - 212 5.6e-14 Domain of unknown function (DUF6469)
AAA_11 PF13086 254 - 608 3e-33 AAA domain
AAA_12 PF13087 616 - 812 1.1e-56 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2145, 2508
Acc36I ACCTGC 1 cut(s) 996
Acc65I GGTACC 1 cut(s) 1126
AccB1I GGYRCC 2 cut(s) 1126, 2727
AccB7I CCANNNNNTGG 1 cut(s) 365
AccII CGCG 1 cut(s) 2699
AccIII TCCGGA 1 cut(s) 972
AciI CCGC 3 cut(s) 947, 1768, 2965
AclWI GGATC 4 cut(s) 121, 134, 1175, 3352
AcoI YGGCCR 1 cut(s) 3014
AcuI CTGAAG 3 cut(s) 1364, 1592, 3231
AcvI CACGTG 1 cut(s) 2402
AcyI GRCGYC 1 cut(s) 2728
AfiI CCNNNNNNNGG 6 cut(s) 365, 860, 979, 1136, 1810, 2493
AflIII ACRYGT 2 cut(s) 926, 2399
AhdI GACNNNNNGTC 1 cut(s) 879
AhlI ACTAGT 1 cut(s) 2450
AjnI CCWGG 5 cut(s) 280, 853, 1516, 2535, 2841
AleI CACNNNNGTG 1 cut(s) 140
AloI GAACNNNNNNTCC 2 cut(s) 1011, 1043
Alw21I GWGCWC 2 cut(s) 934, 3231
Alw26I GTCTC 3 cut(s) 554, 1769, 2125
AlwI GGATC 4 cut(s) 121, 134, 1175, 3352
AlwNI CAGNNNCTG 2 cut(s) 326, 1342
Ama87I CYCGRG 1 cut(s) 995
Aor13HI TCCGGA 1 cut(s) 972
AoxI GGCC 4 cut(s) 422, 740, 2532, 3014
ApeKI GCWGC 6 cut(s) 782, 962, 1715, 2549, 2967, 3041
ArsI GACNNNNNNTTYG 4 cut(s) 2918, 2950, 3059, 3091
AseI ATTAAT 2 cut(s) 839, 1601
Asp700I GAANNNNTTC 2 cut(s) 167, 477
Asp718I GGTACC 1 cut(s) 1126
AspLEI GCGC 1 cut(s) 2730
AspS9I GGNCC 3 cut(s) 848, 1976, 2533
AsuHPI GGTGA 5 cut(s) 296, 812, 1417, 2184, 2315
AsuII TTCGAA 1 cut(s) 3161
AvaI CYCGRG 1 cut(s) 995
AvaII GGWCC 2 cut(s) 848, 1976
AxyI CCTNAGG 1 cut(s) 1185
BaeGI GKGCMC 2 cut(s) 1884, 2811
BaeI ACNNNNGTAYC 2 cut(s) 2985, 3018
BamHI GGATCC 1 cut(s) 126
BanI GGYRCC 2 cut(s) 1126, 2727
BanII GRGCYC 1 cut(s) 3231
BbrPI CACGTG 1 cut(s) 2402
BbsI GAAGAC 5 cut(s) 878, 1489, 2526, 3069, 3219
Bbv12I GWGCWC 2 cut(s) 934, 3231
BbvI GCAGC 6 cut(s) 769, 974, 1702, 2561, 2954, 3053
BciT130I CCWGG 5 cut(s) 282, 855, 1518, 2537, 2843
BciVI GTATCC 1 cut(s) 2986
BclI TGATCA 3 cut(s) 1093, 2077, 3046
BcoDI GTCTC 3 cut(s) 554, 1769, 2125
BcuI ACTAGT 1 cut(s) 2450
BfaI CTAG 6 cut(s) 953, 1016, 1616, 2451, 2474, 2912
BfmI CTRYAG 5 cut(s) 783, 2115, 2829, 2968, 3039
BfoI RGCGCY 1 cut(s) 2731
BfuAI ACCTGC 1 cut(s) 996
BfuI GTATCC 1 cut(s) 2986
BisI GCNGC 6 cut(s) 783, 963, 1716, 2550, 2968, 3042
BlpI GCTNAGC 3 cut(s) 1719, 2778, 3230
BlsI GCNGC 6 cut(s) 784, 964, 1717, 2551, 2969, 3043
BmcAI AGTACT 2 cut(s) 2694, 3361
Bme1390I CCNGG 5 cut(s) 282, 855, 1518, 2537, 2843
Bme18I GGWCC 2 cut(s) 848, 1976
BmeRI GACNNNNNGTC 1 cut(s) 879
BmeT110I CYCGRG 1 cut(s) 995
BmgT120I GGNCC 3 cut(s) 848, 1976, 2533
BmiI GGNNCC 5 cut(s) 128, 849, 1128, 2294, 2729
BmrFI CCNGG 5 cut(s) 282, 855, 1518, 2537, 2843
BmsI GCATC 5 cut(s) 1655, 1905, 1927, 2473, 3320
BpiI GAAGAC 5 cut(s) 878, 1489, 2526, 3069, 3219
BpmI CTGGAG 2 cut(s) 476, 2825
Bpu1102I GCTNAGC 3 cut(s) 1719, 2778, 3230
Bpu14I TTCGAA 1 cut(s) 3161
BpuEI CTTGAG 4 cut(s) 1421, 2000, 2190, 2543
BsaAI YACGTR 1 cut(s) 2402
BsaBI GATNNNNATC 2 cut(s) 333, 3406
BsaHI GRCGYC 1 cut(s) 2728
BsaI GGTCTC 1 cut(s) 1769
BsaJI CCNNGG 4 cut(s) 428, 1809, 2296, 2535
BsaWI WCCGGW 1 cut(s) 972
BsaXI ACNNNNNCTCC 4 cut(s) 916, 946, 1011, 1041
Bsc4I CCNNNNNNNGG 6 cut(s) 365, 860, 979, 1136, 1810, 2493
Bse118I RCCGGY 2 cut(s) 2373, 3016
Bse1I ACTGG 6 cut(s) 493, 865, 988, 1906, 2263, 3357
Bse21I CCTNAGG 1 cut(s) 1185
Bse3DI GCAATG 4 cut(s) 375, 724, 1454, 3391
Bse8I GATNNNNATC 2 cut(s) 333, 3406
BseAI TCCGGA 1 cut(s) 972
BseBI CCWGG 5 cut(s) 282, 855, 1518, 2537, 2843
BseDI CCNNGG 4 cut(s) 428, 1809, 2296, 2535
BseGI GGATG 6 cut(s) 12, 91, 1918, 1920, 1922, 2729
BseJI GATNNNNATC 2 cut(s) 333, 3406
BseLI CCNNNNNNNGG 6 cut(s) 365, 860, 979, 1136, 1810, 2493
BseMI GCAATG 4 cut(s) 375, 724, 1454, 3391
BseMII CTCAG 6 cut(s) 639, 1176, 1733, 2245, 2792, 3244
BseNI ACTGG 6 cut(s) 493, 865, 988, 1906, 2263, 3357
BseRI GAGGAG 3 cut(s) 1316, 3068, 3354
BseSI GKGCMC 2 cut(s) 1884, 2811
BseXI GCAGC 6 cut(s) 769, 974, 1702, 2561, 2954, 3053
BsgI GTGCAG 2 cut(s) 140, 934
Bsh1236I CGCG 1 cut(s) 2699
BshFI GGCC 4 cut(s) 424, 742, 2534, 3016
BshNI GGYRCC 2 cut(s) 1126, 2727
BsiHKAI GWGCWC 2 cut(s) 934, 3231
BsiHKCI CYCGRG 1 cut(s) 995
BsiSI CCGG 3 cut(s) 973, 2374, 3017
BslFI GGGAC 2 cut(s) 2782, 3142
BslI CCNNNNNNNGG 6 cut(s) 365, 860, 979, 1136, 1810, 2493
BsmAI GTCTC 3 cut(s) 554, 1769, 2125
BsmFI GGGAC 2 cut(s) 2782, 3142
BsmI GAATGC 3 cut(s) 1243, 2437, 2854
BsnI GGCC 4 cut(s) 424, 742, 2534, 3016
Bso31I GGTCTC 1 cut(s) 1769
BsoBI CYCGRG 1 cut(s) 995
Bsp119I TTCGAA 1 cut(s) 3161
Bsp1286I GDGCHC 4 cut(s) 934, 1884, 2811, 3231
Bsp13I TCCGGA 1 cut(s) 972
Bsp1407I TGTACA 2 cut(s) 1365, 1559
Bsp143I GATC 9 cut(s) 126, 487, 1093, 1180, 2077, 2279, 3046, 3344, 3401
Bsp1720I GCTNAGC 3 cut(s) 1719, 2778, 3230
Bsp19I CCATGG 1 cut(s) 1809
BspACI CCGC 3 cut(s) 947, 1768, 2965
BspANI GGCC 4 cut(s) 424, 742, 2534, 3016
BspCNI CTCAG 6 cut(s) 638, 1177, 1732, 2244, 2791, 3243
BspEI TCCGGA 1 cut(s) 972
BspFNI CGCG 1 cut(s) 2699
BspHI TCATGA 1 cut(s) 3049
BspLI GGNNCC 5 cut(s) 128, 849, 1128, 2294, 2729
BspMAI CTGCAG 3 cut(s) 787, 2972, 3043
BspMI ACCTGC 1 cut(s) 996
BspPI GGATC 4 cut(s) 121, 134, 1175, 3352
BspT104I TTCGAA 1 cut(s) 3161
BspT107I GGYRCC 2 cut(s) 1126, 2727
BspTNI GGTCTC 1 cut(s) 1769
BsrDI GCAATG 4 cut(s) 375, 724, 1454, 3391
BsrFI RCCGGY 2 cut(s) 2373, 3016
BsrGI TGTACA 2 cut(s) 1365, 1559
BsrI ACTGG 6 cut(s) 493, 865, 988, 1906, 2263, 3357
BssAI RCCGGY 2 cut(s) 2373, 3016
BssECI CCNNGG 4 cut(s) 428, 1809, 2296, 2535
BssMI GATC 9 cut(s) 126, 487, 1093, 1180, 2077, 2279, 3046, 3344, 3401
BssNI GRCGYC 1 cut(s) 2728
BssT1I CCWWGG 3 cut(s) 428, 1809, 2296
Bst2UI CCWGG 5 cut(s) 282, 855, 1518, 2537, 2843
Bst4CI ACNGT 9 cut(s) 797, 1468, 1689, 2332, 2501, 2677, 2830, 2950, 2998
Bst6I CTCTTC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 2728
BstAPI GCANNNNNTGC 2 cut(s) 1835, 2390
BstAUI TGTACA 2 cut(s) 1365, 1559
BstBAI YACGTR 1 cut(s) 2402
BstBI TTCGAA 1 cut(s) 3161
BstC8I GCNNGC 5 cut(s) 724, 1627, 1869, 2137, 2972
BstDEI CTNAG 7 cut(s) 625, 1185, 1719, 2231, 2778, 3230, 3287
BstDSI CCRYGG 1 cut(s) 1809
BstF5I GGATG 6 cut(s) 12, 91, 1918, 1920, 1922, 2729
BstFNI CGCG 1 cut(s) 2699
BstH2I RGCGCY 1 cut(s) 2731
BstHHI GCGC 1 cut(s) 2730
BstKTI GATC 9 cut(s) 129, 490, 1096, 1183, 2080, 2282, 3049, 3347, 3404
BstMAI GTCTC 3 cut(s) 554, 1769, 2125
BstMBI GATC 9 cut(s) 126, 487, 1093, 1180, 2077, 2279, 3046, 3344, 3401
BstMWI GCNNNNNNNGC 5 cut(s) 723, 1835, 1888, 2390, 2546
BstNI CCWGG 5 cut(s) 282, 855, 1518, 2537, 2843
BstNSI RCATGY 3 cut(s) 544, 930, 1670
BstSCI CCNGG 5 cut(s) 280, 853, 1516, 2535, 2841
BstSFI CTRYAG 5 cut(s) 783, 2115, 2829, 2968, 3039
BstSLI GKGCMC 2 cut(s) 1884, 2811
BstUI CGCG 1 cut(s) 2699
BstV1I GCAGC 6 cut(s) 769, 974, 1702, 2561, 2954, 3053
BstV2I GAAGAC 5 cut(s) 878, 1489, 2526, 3069, 3219
BstX2I RGATCY 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 3012
BstYI RGATCY 1 cut(s) 126
Bsu36I CCTNAGG 1 cut(s) 1185
BsuI GTATCC 1 cut(s) 2986
BsuRI GGCC 4 cut(s) 424, 742, 2534, 3016
BtgI CCRYGG 1 cut(s) 1809
BtsCI GGATG 6 cut(s) 12, 91, 1918, 1920, 1922, 2729
BtsIMutI CAGTG 5 cut(s) 1568, 2634, 2673, 2955, 3321
BveI ACCTGC 1 cut(s) 996
Cac8I GCNNGC 5 cut(s) 724, 1627, 1869, 2137, 2972
CaiI CAGNNNCTG 2 cut(s) 326, 1342
CciI TCATGA 1 cut(s) 3049
CfoI GCGC 1 cut(s) 2730
Cfr10I RCCGGY 2 cut(s) 2373, 3016
Cfr13I GGNCC 3 cut(s) 848, 1976, 2533
CseI GACGC 2 cut(s) 2424, 2909
CspCI CAANNNNNGTGG 4 cut(s) 925, 960, 3322, 3357
DdeI CTNAG 7 cut(s) 625, 1185, 1719, 2231, 2778, 3230, 3287
DinI GGCGCC 1 cut(s) 2729
DpnI GATC 9 cut(s) 128, 489, 1095, 1182, 2079, 2281, 3048, 3346, 3403
DpnII GATC 9 cut(s) 126, 487, 1093, 1180, 2077, 2279, 3046, 3344, 3401
DriI GACNNNNNGTC 1 cut(s) 879
EaeI YGGCCR 1 cut(s) 3014
Eam1104I CTCTTC 1 cut(s) 5
Eam1105I GACNNNNNGTC 1 cut(s) 879
EarI CTCTTC 1 cut(s) 5
EciI GGCGGA 1 cut(s) 1757
Ecl136II GAGCTC 1 cut(s) 3229
Eco130I CCWWGG 3 cut(s) 428, 1809, 2296
Eco147I AGGCCT 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 3231
Eco31I GGTCTC 1 cut(s) 1769
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 848, 1976
Eco53kI GAGCTC 1 cut(s) 3229
Eco57I CTGAAG 3 cut(s) 1364, 1592, 3231
Eco72I CACGTG 1 cut(s) 2402
Eco81I CCTNAGG 1 cut(s) 1185
Eco88I CYCGRG 1 cut(s) 995
EcoICRI GAGCTC 1 cut(s) 3229
EcoO109I RGGNCCY 1 cut(s) 848
EcoRI GAATTC 1 cut(s) 826
EcoRII CCWGG 5 cut(s) 280, 853, 1516, 2535, 2841
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 3 cut(s) 428, 1809, 2296
EcoT22I ATGCAT 5 cut(s) 407, 546, 1600, 1920, 2984
EcoT38I GRGCYC 1 cut(s) 3231
EgeI GGCGCC 1 cut(s) 2729
EheI GGCGCC 1 cut(s) 2729
ErhI CCWWGG 3 cut(s) 428, 1809, 2296
FalI AAGNNNNNCTT 4 cut(s) 1481, 1513, 2615, 2647
FaqI GGGAC 2 cut(s) 2782, 3142
FauNDI CATATG 1 cut(s) 1297
FbaI TGATCA 3 cut(s) 1093, 2077, 3046
Fnu4HI GCNGC 6 cut(s) 783, 963, 1716, 2550, 2968, 3042
FokI GGATG 6 cut(s) 19, 98, 1905, 1909, 1927, 2736
FriOI GRGCYC 1 cut(s) 3231
Fsp4HI GCNGC 6 cut(s) 783, 963, 1716, 2550, 2968, 3042
FspBI CTAG 6 cut(s) 953, 1016, 1616, 2451, 2474, 2912
GlaI GCGC 1 cut(s) 2729
GluI GCNGC 6 cut(s) 783, 963, 1716, 2550, 2968, 3042
GsuI CTGGAG 2 cut(s) 476, 2825
HaeII RGCGCY 1 cut(s) 2731
HaeIII GGCC 4 cut(s) 424, 742, 2534, 3016
HapII CCGG 3 cut(s) 973, 2374, 3017
HgaI GACGC 2 cut(s) 2424, 2909
HhaI GCGC 1 cut(s) 2730
Hin1I GRCGYC 1 cut(s) 2728
Hin6I GCGC 1 cut(s) 2728
HinP1I GCGC 1 cut(s) 2728
HincII GTYRAC 4 cut(s) 985, 2287, 2397, 2439
HindII GTYRAC 4 cut(s) 985, 2287, 2397, 2439
HindIII AAGCTT 2 cut(s) 2561, 2711
HpaI GTTAAC 2 cut(s) 985, 2397
HpaII CCGG 3 cut(s) 973, 2374, 3017
HphI GGTGA 5 cut(s) 296, 812, 1417, 2184, 2315
Hpy166II GTNNAC 6 cut(s) 985, 1368, 1560, 2287, 2397, 2439
Hpy8I GTNNAC 6 cut(s) 985, 1368, 1560, 2287, 2397, 2439
HpyCH4III ACNGT 9 cut(s) 797, 1468, 1689, 2332, 2501, 2677, 2830, 2950, 2998
HpyCH4IV ACGT 3 cut(s) 2401, 2859, 3171
HpyF10VI GCNNNNNNNGC 5 cut(s) 723, 1835, 1888, 2390, 2546
HpyF3I CTNAG 7 cut(s) 625, 1185, 1719, 2231, 2778, 3230, 3287
HpySE526I ACGT 3 cut(s) 2401, 2859, 3171
Hsp92I GRCGYC 1 cut(s) 2728
HspAI GCGC 1 cut(s) 2728
KasI GGCGCC 1 cut(s) 2727
Kpn2I TCCGGA 1 cut(s) 972
KpnI GGTACC 1 cut(s) 1130
Ksp22I TGATCA 3 cut(s) 1093, 2077, 3046
KspAI GTTAAC 2 cut(s) 985, 2397
Kzo9I GATC 9 cut(s) 126, 487, 1093, 1180, 2077, 2279, 3046, 3344, 3401
LmnI GCTCC 3 cut(s) 937, 1339, 3226
Lsp1109I GCAGC 6 cut(s) 769, 974, 1702, 2561, 2954, 3053
LweI GCATC 5 cut(s) 1655, 1905, 1927, 2473, 3320
MaeI CTAG 6 cut(s) 953, 1016, 1616, 2451, 2474, 2912
MaeII ACGT 3 cut(s) 2401, 2859, 3171
MaeIII GTNAC 8 cut(s) 142, 155, 228, 284, 301, 990, 1037, 2453
MalI GATC 9 cut(s) 128, 489, 1095, 1182, 2079, 2281, 3048, 3346, 3403
MboI GATC 9 cut(s) 126, 487, 1093, 1180, 2077, 2279, 3046, 3344, 3401
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 4 cut(s) 934, 1884, 2811, 3231
Mly113I GGCGCC 1 cut(s) 2728
MlyI GAGTC 5 cut(s) 802, 889, 963, 2450, 2588
MmeI TCCRAC 3 cut(s) 346, 1671, 2072
Mph1103I ATGCAT 5 cut(s) 407, 546, 1600, 1920, 2984
MroI TCCGGA 1 cut(s) 972
MroXI GAANNNNTTC 2 cut(s) 167, 477
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 3 cut(s) 2782, 2967, 3044
MspI CCGG 3 cut(s) 973, 2374, 3017
MspR9I CCNGG 5 cut(s) 282, 855, 1518, 2537, 2843
Mva1269I GAATGC 3 cut(s) 1243, 2437, 2854
MvaI CCWGG 5 cut(s) 282, 855, 1518, 2537, 2843
MvnI CGCG 1 cut(s) 2699
MwoI GCNNNNNNNGC 5 cut(s) 723, 1835, 1888, 2390, 2546
NarI GGCGCC 1 cut(s) 2728
NcoI CCATGG 1 cut(s) 1809
NdeI CATATG 1 cut(s) 1297
NdeII GATC 9 cut(s) 126, 487, 1093, 1180, 2077, 2279, 3046, 3344, 3401
NlaIV GGNNCC 5 cut(s) 128, 849, 1128, 2294, 2729
NmuCI GTSAC 5 cut(s) 142, 228, 284, 990, 2453
NsiI ATGCAT 5 cut(s) 407, 546, 1600, 1920, 2984
NspI RCATGY 3 cut(s) 544, 930, 1670
NspV TTCGAA 1 cut(s) 3161
OliI CACNNNNGTG 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 995
PagI TCATGA 1 cut(s) 3049
PceI AGGCCT 1 cut(s) 424
PciI ACATGT 1 cut(s) 926
PctI GAATGC 3 cut(s) 1243, 2437, 2854
PdmI GAANNNNTTC 2 cut(s) 167, 477
PflFI GACNNNGTC 1 cut(s) 1415
PflMI CCANNNNNTGG 1 cut(s) 365
PfoI TCCNGGA 2 cut(s) 1516, 2841
PkrI GCNGC 6 cut(s) 784, 964, 1717, 2551, 2969, 3043
PleI GAGTC 5 cut(s) 802, 888, 963, 2450, 2588
PluTI GGCGCC 1 cut(s) 2731
PmaCI CACGTG 1 cut(s) 2402
PmlI CACGTG 1 cut(s) 2402
PpsI GAGTC 5 cut(s) 802, 888, 963, 2450, 2588
Ppu21I YACGTR 1 cut(s) 2402
PpuMI RGGWCCY 1 cut(s) 848
PscI ACATGT 1 cut(s) 926
PshBI ATTAAT 2 cut(s) 839, 1601
PsiI TTATAA 2 cut(s) 2145, 2508
Psp124BI GAGCTC 1 cut(s) 3231
Psp5II RGGWCCY 1 cut(s) 848
Psp6I CCWGG 5 cut(s) 280, 853, 1516, 2535, 2841
PspCI CACGTG 1 cut(s) 2402
PspGI CCWGG 5 cut(s) 280, 853, 1516, 2535, 2841
PspN4I GGNNCC 5 cut(s) 128, 849, 1128, 2294, 2729
PspPI GGNCC 3 cut(s) 848, 1976, 2533
PspPPI RGGWCCY 1 cut(s) 848
PspXI VCTCGAGB 1 cut(s) 995
PsrI GAACNNNNNNTAC 2 cut(s) 1543, 1575
PstI CTGCAG 3 cut(s) 787, 2972, 3043
PstNI CAGNNNCTG 2 cut(s) 326, 1342
PsuI RGATCY 1 cut(s) 126
PsyI GACNNNGTC 1 cut(s) 1415
PvuII CAGCTG 2 cut(s) 2782, 3044
RseI CAYNNNNRTG 1 cut(s) 140
SacI GAGCTC 1 cut(s) 3231
SatI GCNGC 6 cut(s) 783, 963, 1716, 2550, 2968, 3042
Sau3AI GATC 9 cut(s) 126, 487, 1093, 1180, 2077, 2279, 3046, 3344, 3401
Sau96I GGNCC 3 cut(s) 848, 1976, 2533
ScaI AGTACT 2 cut(s) 2694, 3361
SchI GAGTC 5 cut(s) 802, 889, 963, 2450, 2588
ScrFI CCNGG 5 cut(s) 282, 855, 1518, 2537, 2843
SduI GDGCHC 4 cut(s) 934, 1884, 2811, 3231
SfaNI GCATC 5 cut(s) 1655, 1905, 1927, 2473, 3320
SfcI CTRYAG 5 cut(s) 783, 2115, 2829, 2968, 3039
SfoI GGCGCC 1 cut(s) 2729
Sfr274I CTCGAG 1 cut(s) 995
SfuI TTCGAA 1 cut(s) 3161
SinI GGWCC 2 cut(s) 848, 1976
SlaI CTCGAG 1 cut(s) 995
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 5 cut(s) 995, 1436, 2015, 2205, 2558
SmoI CTYRAG 5 cut(s) 995, 1436, 2015, 2205, 2558
SpeI ACTAGT 1 cut(s) 2450
SseBI AGGCCT 1 cut(s) 424
SsiI CCGC 3 cut(s) 947, 1768, 2965
SspDI GGCGCC 1 cut(s) 2727
SspI AATATT 3 cut(s) 943, 1196, 1635
SspMI CTAG 6 cut(s) 953, 1016, 1616, 2451, 2474, 2912
SstI GAGCTC 1 cut(s) 3231
StuI AGGCCT 1 cut(s) 424
StyD4I CCNGG 5 cut(s) 280, 853, 1516, 2535, 2841
StyI CCWWGG 3 cut(s) 428, 1809, 2296
TaaI ACNGT 9 cut(s) 797, 1468, 1689, 2332, 2501, 2677, 2830, 2950, 2998
TaiI ACGT 3 cut(s) 2404, 2862, 3174
TatI WGTACW 7 cut(s) 1203, 1365, 1559, 1640, 1908, 2692, 3359
TscAI CASTG 5 cut(s) 1575, 2641, 2680, 2955, 3328
TseFI GTSAC 5 cut(s) 142, 228, 284, 990, 2453
TseI GCWGC 6 cut(s) 782, 962, 1715, 2549, 2967, 3041
Tsp45I GTSAC 5 cut(s) 142, 228, 284, 990, 2453
TspGWI ACGGA 5 cut(s) 593, 820, 2257, 2509, 3074
TspRI CASTG 5 cut(s) 1575, 2641, 2680, 2955, 3328
Tth111I GACNNNGTC 1 cut(s) 1415
Van91I CCANNNNNTGG 1 cut(s) 365
VpaK11BI GGWCC 2 cut(s) 848, 1976
VspI ATTAAT 2 cut(s) 839, 1601
XceI RCATGY 3 cut(s) 544, 930, 1670
XcmI CCANNNNNNNNNTGG 1 cut(s) 1970
XhoI CTCGAG 1 cut(s) 995
XmnI GAANNNNTTC 2 cut(s) 167, 477
XspI CTAG 6 cut(s) 953, 1016, 1616, 2451, 2474, 2912
ZrmI AGTACT 2 cut(s) 2694, 3361
Zsp2I ATGCAT 5 cut(s) 407, 546, 1600, 1920, 2984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.