AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 97 |
| AcsI | RAATTY | 3 cut(s) | 73, 138, 202 |
| AgsI | TTSAA | 3 cut(s) | 137, 208, 262 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 164, 196 |
| ApeKI | GCWGC | 1 cut(s) | 99 |
| ApoI | RAATTY | 3 cut(s) | 73, 138, 202 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 50, 82 |
| BbvI | GCAGC | 1 cut(s) | 86 |
| BccI | CCATC | 1 cut(s) | 191 |
| BceAI | ACGGC | 1 cut(s) | 87 |
| BfaI | CTAG | 1 cut(s) | 44 |
| BfmI | CTRYAG | 1 cut(s) | 380 |
| BisI | GCNGC | 1 cut(s) | 100 |
| BlsI | GCNGC | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 1 cut(s) | 167 |
| BseDI | CCNNGG | 1 cut(s) | 167 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseMII | CTCAG | 1 cut(s) | 342 |
| BseXI | GCAGC | 1 cut(s) | 86 |
| Bsp19I | CCATGG | 1 cut(s) | 167 |
| BspACI | CCGC | 1 cut(s) | 97 |
| BspCNI | CTCAG | 1 cut(s) | 343 |
| BssECI | CCNNGG | 1 cut(s) | 167 |
| BssT1I | CCWWGG | 1 cut(s) | 167 |
| Bst4CI | ACNGT | 2 cut(s) | 82, 381 |
| BstDEI | CTNAG | 1 cut(s) | 351 |
| BstDSI | CCRYGG | 1 cut(s) | 167 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstSFI | CTRYAG | 1 cut(s) | 380 |
| BstV1I | GCAGC | 1 cut(s) | 86 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 190 |
| BtgI | CCRYGG | 1 cut(s) | 167 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| BtsIMutI | CAGTG | 1 cut(s) | 87 |
| CseI | GACGC | 1 cut(s) | 41 |
| CviAII | CATG | 3 cut(s) | 168, 326, 356 |
| DdeI | CTNAG | 1 cut(s) | 351 |
| Eco130I | CCWWGG | 1 cut(s) | 167 |
| EcoT14I | CCWWGG | 1 cut(s) | 167 |
| EcoT22I | ATGCAT | 1 cut(s) | 116 |
| ErhI | CCWWGG | 1 cut(s) | 167 |
| FaeI | CATG | 3 cut(s) | 171, 329, 359 |
| FatI | CATG | 3 cut(s) | 167, 325, 355 |
| Fnu4HI | GCNGC | 1 cut(s) | 100 |
| FokI | GGATG | 1 cut(s) | 352 |
| Fsp4HI | GCNGC | 1 cut(s) | 100 |
| FspBI | CTAG | 1 cut(s) | 44 |
| GluI | GCNGC | 1 cut(s) | 100 |
| HgaI | GACGC | 1 cut(s) | 41 |
| Hin1II | CATG | 3 cut(s) | 171, 329, 359 |
| Hpy166II | GTNNAC | 1 cut(s) | 85 |
| Hpy188I | TCNGA | 2 cut(s) | 198, 352 |
| Hpy188III | TCNNGA | 1 cut(s) | 56 |
| Hpy8I | GTNNAC | 1 cut(s) | 85 |
| HpyCH4III | ACNGT | 2 cut(s) | 82, 381 |
| HpyCH4V | TGCA | 3 cut(s) | 114, 213, 329 |
| HpyF3I | CTNAG | 1 cut(s) | 351 |
| Hsp92II | CATG | 3 cut(s) | 171, 329, 359 |
| LmnI | GCTCC | 1 cut(s) | 221 |
| LpnPI | CCDG | 2 cut(s) | 51, 106 |
| Lsp1109I | GCAGC | 1 cut(s) | 86 |
| MaeI | CTAG | 1 cut(s) | 44 |
| MaeIII | GTNAC | 1 cut(s) | 104 |
| MboII | GAAGA | 1 cut(s) | 344 |
| MfeI | CAATTG | 1 cut(s) | 208 |
| MluCI | AATT | 8 cut(s) | 73, 138, 187, 202, 208, 243, 248, 346 |
| MnlI | CCTC | 1 cut(s) | 379 |
| Mph1103I | ATGCAT | 1 cut(s) | 116 |
| MseI | TTAA | 2 cut(s) | 246, 251 |
| MspA1I | CMGCKG | 1 cut(s) | 99 |
| MunI | CAATTG | 1 cut(s) | 208 |
| NcoI | CCATGG | 1 cut(s) | 167 |
| NlaIII | CATG | 3 cut(s) | 171, 329, 359 |
| NsiI | ATGCAT | 1 cut(s) | 116 |
| PkrI | GCNGC | 1 cut(s) | 101 |
| SaqAI | TTAA | 2 cut(s) | 246, 251 |
| SatI | GCNGC | 1 cut(s) | 100 |
| SetI | ASST | 1 cut(s) | 125 |
| SfcI | CTRYAG | 1 cut(s) | 380 |
| SgeI | CNNG | 7 cut(s) | 50, 56, 68, 133, 180, 338, 368 |
| Sse9I | AATT | 8 cut(s) | 73, 138, 187, 202, 208, 243, 248, 346 |
| SsiI | CCGC | 1 cut(s) | 97 |
| SspI | AATATT | 1 cut(s) | 296 |
| SspMI | CTAG | 1 cut(s) | 44 |
| StyI | CCWWGG | 1 cut(s) | 167 |
| TaaI | ACNGT | 2 cut(s) | 82, 381 |
| TasI | AATT | 8 cut(s) | 73, 138, 187, 202, 208, 243, 248, 346 |
| Tru1I | TTAA | 2 cut(s) | 246, 251 |
| Tru9I | TTAA | 2 cut(s) | 246, 251 |
| TscAI | CASTG | 1 cut(s) | 87 |
| TseI | GCWGC | 1 cut(s) | 99 |
| TspDTI | ATGAA | 4 cut(s) | 17, 107, 140, 372 |
| TspRI | CASTG | 1 cut(s) | 87 |
| XapI | RAATTY | 3 cut(s) | 73, 138, 202 |
| XspI | CTAG | 1 cut(s) | 44 |
| Zsp2I | ATGCAT | 1 cut(s) | 116 |