Rroxscaffold_6G00394230

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000279
Physical Location & Seq
Reverse (-)
14581002 .. 14584012
3011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394230.1

Sequence Viewer

Length: 1281 bp
ATGTATGAGCCACAGGTTGGAGATGTCATTGCCTTGACAAATGTTAGACCAGAATGCATTGAGGATTTGAACAGGCCTCCAAGGTTCTATCTAATCGCTTATGTTGATAAAGCAAATGATATTGATGAATTTCCTGATGCCCTCCAGTTCAAGATATTGACATGGTCAGAGCTTTGGGAACGAAGACCACTGGAATTGTTGGTCATTGATGAAGCTGCTCAGCTTAAAGAATGTGAATCAGCAATTCCTTTACAACTATCTAGTCTCCGCCGTGCTATCCTTGTAGGAGATGAGAGGCAACTCCCTGCCATGGTTAAAAGCGAGATTGCAGCAAGTGCTGATTTTGGGAGAAGTTTGTTTGGAAGGCTGGCAAAGTTGGGATACAAGAAGCATCTACTCAATGTCCAGTACAGGATGCATCCATCCGTCAGTTTATTTCCGAAAAGGGAGTTCTACGACAACCAGATATTAGATGGTCCAAATGTCAAAGAAAGAAGCTATGAGAGTGGAACAAAGAAGAAAGTTGATACTGGGGTCATATCACCATACAAGGCTCAAGTTTATGCAATTCAAGAGATACTCAGAAAATATACTGAAACTTCTGATACTGGCTTCTCCGTAAGTGTGCGATCTGTTGATGGGTTCCAAGGTGGTGAAGAAGATGTGATAATTATATCTACCTTCCAATGTACTGGGAACGGGTCAGATGGTTTCTTGTTGAACAGGCAAAGAGAAAATGTTGCCCTAACACGTGCAAGGTGTTGCCTTTGGATAGTGGGGAATGGTTCGACTTTGATTACTAGTGACTCTGTTTGGAAGAAGCTAGTCCTTTATGCCAAGAAACGGAACTGTTTTTATATTGTTGATGAAGACAGCAACTTGGCTCAGGCTATTATTACAGCTGCCCTGCTGGAGCTTGACCAACTTCATTCTCTGCTCATTATCGACTCTACGCTGTTCAAAAACGCTATATGGAAGGAGAATGCACATTACGTCCAAGTTATGAAGTTTTGGGATATTTTGCCATTTTCTCATATACCAGAGCTAGCAAAGCGTCTTGACATTATTTTTGGAAATTTTACAGTGGATAAGATGAACCGCTGCAGGCACAAATGCATTGACAGGGATACTGTTGTTCCAATGATATGGCCGGTGGTTTTTGGCAACTTTCCTGTAGCTGATCATGAGGAGTACCTTTCAAAACTATTGTGTTCTTTCAGTAAACAGCAACTTCAAGATATGGGTGATGTTGAAGTTCATGTTCTGAAAAAGAGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

426

Amino Acids

48.76

Weight (kDa)

6.34

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_11 PF13086 63 - 108 2.9e-12 AAA domain
AAA_12 PF13087 116 - 168 1.9e-12 AAA domain
AAA_12 PF13087 173 - 262 1.7e-24 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 17
AciI CCGC 2 cut(s) 268, 1099
AcoI YGGCCR 1 cut(s) 1148
AcsI RAATTY 2 cut(s) 128, 1075
AcvI CACGTG 1 cut(s) 752
AfaI GTAC 3 cut(s) 410, 691, 1193
AfiI CCNNNNNNNGG 3 cut(s) 17, 310, 843
AflIII ACRYGT 1 cut(s) 749
AgsI TTSAA 8 cut(s) 70, 151, 572, 721, 961, 1200, 1235, 1253
AhlI ACTAGT 1 cut(s) 800
AluBI AGCT 9 cut(s) 172, 215, 223, 498, 823, 902, 916, 1045, 1178
AluI AGCT 9 cut(s) 172, 215, 223, 498, 823, 902, 916, 1045, 1178
Alw26I GTCTC 1 cut(s) 269
AoxI GGCC 2 cut(s) 74, 1148
ApeKI GCWGC 4 cut(s) 215, 329, 902, 1101
ApoI RAATTY 2 cut(s) 128, 1075
ArsI GACNNNNNNTTYG 2 cut(s) 1052, 1084
AspS9I GGNCC 1 cut(s) 476
AsuHPI GGTGA 3 cut(s) 534, 665, 1256
AsuNHI GCTAGC 1 cut(s) 1045
AvaII GGWCC 1 cut(s) 476
BaeI ACNNNNGTAYC 4 cut(s) 519, 552, 1119, 1152
BbrPI CACGTG 1 cut(s) 752
BbsI GAAGAC 2 cut(s) 190, 876
BbvI GCAGC 4 cut(s) 202, 341, 889, 1088
BccI CCATC 4 cut(s) 430, 467, 632, 701
BceAI ACGGC 1 cut(s) 255
BciVI GTATCC 2 cut(s) 374, 1120
BclI TGATCA 1 cut(s) 1180
BcoDI GTCTC 1 cut(s) 269
BcuI ACTAGT 1 cut(s) 800
BfaI CTAG 4 cut(s) 261, 801, 824, 1046
BfmI CTRYAG 2 cut(s) 1102, 1173
BfuI GTATCC 2 cut(s) 374, 1120
BisI GCNGC 4 cut(s) 216, 330, 903, 1102
BlpI GCTNAGC 1 cut(s) 219
BlsI GCNGC 4 cut(s) 217, 331, 904, 1103
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 1 cut(s) 644
BmrI ACTGGG 2 cut(s) 540, 702
BmsI GCATC 4 cut(s) 127, 400, 405, 427
BmtI GCTAGC 1 cut(s) 1049
BmuI ACTGGG 2 cut(s) 540, 702
BpiI GAAGAC 2 cut(s) 190, 876
BpmI CTGGAG 2 cut(s) 128, 932
Bpu10I CCTNAGC 1 cut(s) 885
Bpu1102I GCTNAGC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 752
BsaJI CCNNGG 3 cut(s) 80, 309, 646
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 310, 843
Bse118I RCCGGY 1 cut(s) 1150
Bse1I ACTGG 6 cut(s) 145, 195, 406, 535, 613, 697
Bse3DI GCAATG 1 cut(s) 27
BseDI CCNNGG 3 cut(s) 80, 309, 646
BseGI GGATG 3 cut(s) 418, 420, 422
BseLI CCNNNNNNNGG 3 cut(s) 17, 310, 843
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 3 cut(s) 233, 595, 899
BseNI ACTGG 6 cut(s) 145, 195, 406, 535, 613, 697
BseRI GAGGAG 1 cut(s) 1202
BseXI GCAGC 4 cut(s) 202, 341, 889, 1088
BshFI GGCC 2 cut(s) 76, 1150
BsiSI CCGG 1 cut(s) 1151
BslI CCNNNNNNNGG 3 cut(s) 17, 310, 843
BsmAI GTCTC 1 cut(s) 269
BsmI GAATGC 2 cut(s) 59, 988
BsnI GGCC 2 cut(s) 76, 1150
Bsp143I GATC 2 cut(s) 629, 1180
Bsp1720I GCTNAGC 1 cut(s) 219
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 2 cut(s) 268, 1099
BspANI GGCC 2 cut(s) 76, 1150
BspCNI CTCAG 3 cut(s) 232, 594, 898
BspHI TCATGA 1 cut(s) 1183
BspLI GGNNCC 1 cut(s) 644
BspMAI CTGCAG 1 cut(s) 1106
BspOI GCTAGC 1 cut(s) 1049
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 1150
BsrI ACTGG 6 cut(s) 145, 195, 406, 535, 613, 697
BssAI RCCGGY 1 cut(s) 1150
BssECI CCNNGG 3 cut(s) 80, 309, 646
BssMI GATC 2 cut(s) 629, 1180
BssT1I CCWWGG 3 cut(s) 80, 309, 646
Bst4CI ACNGT 3 cut(s) 851, 1084, 1132
BstAPI GCANNNNNTGC 1 cut(s) 335
BstBAI YACGTR 1 cut(s) 752
BstC8I GCNNGC 3 cut(s) 369, 1047, 1106
BstDEI CTNAG 3 cut(s) 219, 581, 885
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 3 cut(s) 418, 420, 422
BstKTI GATC 2 cut(s) 632, 1183
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 2 cut(s) 629, 1180
BstMWI GCNNNNNNNGC 2 cut(s) 335, 1051
BstSFI CTRYAG 2 cut(s) 1102, 1173
BstV1I GCAGC 4 cut(s) 202, 341, 889, 1088
BstV2I GAAGAC 2 cut(s) 190, 876
BstXI CCANNNNNNTGG 2 cut(s) 692, 1146
BsuI GTATCC 2 cut(s) 374, 1120
BsuRI GGCC 2 cut(s) 76, 1150
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 3 cut(s) 418, 420, 422
BtsIMutI CAGTG 2 cut(s) 188, 1089
Cac8I GCNNGC 3 cut(s) 369, 1047, 1106
CciI TCATGA 1 cut(s) 1183
Cfr10I RCCGGY 1 cut(s) 1150
Cfr13I GGNCC 1 cut(s) 476
CseI GACGC 1 cut(s) 1043
Csp6I GTAC 3 cut(s) 409, 690, 1192
CspCI CAANNNNNGTGG 2 cut(s) 177, 212
CviAII CATG 4 cut(s) 162, 310, 1184, 1259
CviQI GTAC 3 cut(s) 409, 690, 1192
DdeI CTNAG 3 cut(s) 219, 581, 885
DpnI GATC 2 cut(s) 631, 1182
DpnII GATC 2 cut(s) 629, 1180
EaeI YGGCCR 1 cut(s) 1148
EciI GGCGGA 1 cut(s) 257
Eco130I CCWWGG 3 cut(s) 80, 309, 646
Eco147I AGGCCT 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 476
Eco72I CACGTG 1 cut(s) 752
EcoT14I CCWWGG 3 cut(s) 80, 309, 646
EcoT22I ATGCAT 3 cut(s) 59, 420, 1118
ErhI CCWWGG 3 cut(s) 80, 309, 646
FaeI CATG 4 cut(s) 165, 313, 1187, 1262
FatI CATG 4 cut(s) 161, 309, 1183, 1258
FbaI TGATCA 1 cut(s) 1180
Fnu4HI GCNGC 4 cut(s) 216, 330, 903, 1102
FokI GGATG 3 cut(s) 405, 409, 427
Fsp4HI GCNGC 4 cut(s) 216, 330, 903, 1102
FspBI CTAG 4 cut(s) 261, 801, 824, 1046
GluI GCNGC 4 cut(s) 216, 330, 903, 1102
GsuI CTGGAG 2 cut(s) 128, 932
HaeIII GGCC 2 cut(s) 76, 1150
HapII CCGG 1 cut(s) 1151
HgaI GACGC 1 cut(s) 1043
Hin1II CATG 4 cut(s) 165, 313, 1187, 1262
HinfI GANTC 3 cut(s) 236, 806, 947
HpaII CCGG 1 cut(s) 1151
HphI GGTGA 3 cut(s) 534, 665, 1256
Hpy166II GTNNAC 1 cut(s) 1223
Hpy188I TCNGA 6 cut(s) 169, 441, 584, 604, 706, 1266
Hpy188III TCNNGA 6 cut(s) 134, 151, 572, 1058, 1184, 1235
Hpy8I GTNNAC 1 cut(s) 1223
HpyAV CCTTC 3 cut(s) 357, 691, 970
HpyCH4III ACNGT 3 cut(s) 851, 1084, 1132
HpyCH4IV ACGT 2 cut(s) 751, 993
HpyCH4V TGCA 8 cut(s) 57, 329, 418, 566, 755, 986, 1104, 1116
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 1051
HpyF3I CTNAG 3 cut(s) 219, 581, 885
HpySE526I ACGT 2 cut(s) 751, 993
Hsp92II CATG 4 cut(s) 165, 313, 1187, 1262
Ksp22I TGATCA 1 cut(s) 1180
Kzo9I GATC 2 cut(s) 629, 1180
LmnI GCTCC 1 cut(s) 913
Lsp1109I GCAGC 4 cut(s) 202, 341, 889, 1088
LweI GCATC 4 cut(s) 127, 400, 405, 427
MaeI CTAG 4 cut(s) 261, 801, 824, 1046
MaeII ACGT 2 cut(s) 751, 993
MaeIII GTNAC 1 cut(s) 803
MalI GATC 2 cut(s) 631, 1182
MboI GATC 2 cut(s) 629, 1180
MboII GAAGA 6 cut(s) 195, 529, 668, 671, 829, 881
MluCI AATT 6 cut(s) 128, 194, 243, 567, 669, 1075
MlyI GAGTC 2 cut(s) 800, 941
MnlI CCTC 6 cut(s) 55, 87, 152, 288, 1180, 1266
Mph1103I ATGCAT 3 cut(s) 59, 420, 1118
MseI TTAA 2 cut(s) 225, 315
MspA1I CMGCKG 2 cut(s) 902, 1101
MspI CCGG 1 cut(s) 1151
Mva1269I GAATGC 2 cut(s) 59, 988
MwoI GCNNNNNNNGC 2 cut(s) 335, 1051
NcoI CCATGG 1 cut(s) 309
NdeII GATC 2 cut(s) 629, 1180
NheI GCTAGC 1 cut(s) 1045
NlaIII CATG 4 cut(s) 165, 313, 1187, 1262
NlaIV GGNNCC 1 cut(s) 644
NmuCI GTSAC 1 cut(s) 803
NsiI ATGCAT 3 cut(s) 59, 420, 1118
PagI TCATGA 1 cut(s) 1183
PceI AGGCCT 1 cut(s) 76
PctI GAATGC 2 cut(s) 59, 988
PfeI GAWTC 1 cut(s) 236
PflFI GACNNNGTC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 17
PkrI GCNGC 4 cut(s) 217, 331, 904, 1103
PleI GAGTC 2 cut(s) 800, 941
PmaCI CACGTG 1 cut(s) 752
PmlI CACGTG 1 cut(s) 752
PpsI GAGTC 2 cut(s) 800, 941
Ppu21I YACGTR 1 cut(s) 752
PspCI CACGTG 1 cut(s) 752
PspN4I GGNNCC 1 cut(s) 644
PspPI GGNCC 1 cut(s) 476
PstI CTGCAG 1 cut(s) 1106
PsyI GACNNNGTC 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 3 cut(s) 410, 691, 1193
RsaNI GTAC 3 cut(s) 409, 690, 1192
SaqAI TTAA 2 cut(s) 225, 315
SatI GCNGC 4 cut(s) 216, 330, 903, 1102
Sau3AI GATC 2 cut(s) 629, 1180
Sau96I GGNCC 1 cut(s) 476
SchI GAGTC 2 cut(s) 800, 941
SfaNI GCATC 4 cut(s) 127, 400, 405, 427
SfcI CTRYAG 2 cut(s) 1102, 1173
SinI GGWCC 1 cut(s) 476
SmlI CTYRAG 1 cut(s) 555
SmoI CTYRAG 1 cut(s) 555
SpeI ACTAGT 1 cut(s) 800
Sse9I AATT 6 cut(s) 128, 194, 243, 567, 669, 1075
SseBI AGGCCT 1 cut(s) 76
SsiI CCGC 2 cut(s) 268, 1099
SspMI CTAG 4 cut(s) 261, 801, 824, 1046
StuI AGGCCT 1 cut(s) 76
StyI CCWWGG 3 cut(s) 80, 309, 646
TaaI ACNGT 3 cut(s) 851, 1084, 1132
TaiI ACGT 2 cut(s) 754, 996
TaqI TCGA 2 cut(s) 788, 945
TasI AATT 6 cut(s) 128, 194, 243, 567, 669, 1075
TatI WGTACW 2 cut(s) 408, 689
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 225, 315
Tru9I TTAA 2 cut(s) 225, 315
TscAI CASTG 2 cut(s) 195, 1089
TseFI GTSAC 1 cut(s) 803
TseI GCWGC 4 cut(s) 215, 329, 902, 1101
Tsp45I GTSAC 1 cut(s) 803
TspDTI ATGAA 7 cut(s) 141, 225, 882, 917, 1019, 1109, 1247
TspGWI ACGGA 3 cut(s) 415, 607, 859
TspRI CASTG 2 cut(s) 195, 1089
Tth111I GACNNNGTC 1 cut(s) 163
Van91I CCANNNNNTGG 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 476
XapI RAATTY 2 cut(s) 128, 1075
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XspI CTAG 4 cut(s) 261, 801, 824, 1046
Zsp2I ATGCAT 3 cut(s) 59, 420, 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.