AAA domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1230 |
| AccB1I | GGYRCC | 1 cut(s) | 2868 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 347, 851, 988, 1130 |
| AccII | CGCG | 2 cut(s) | 235, 2304 |
| AciI | CCGC | 2 cut(s) | 1869, 2304 |
| AcoI | YGGCCR | 1 cut(s) | 3146 |
| AcuI | CTGAAG | 2 cut(s) | 1616, 3051 |
| AcvI | CACGTG | 1 cut(s) | 2543 |
| AcyI | GRCGYC | 1 cut(s) | 2869 |
| AdeI | CACNNNGTG | 2 cut(s) | 744, 1787 |
| AfaI | GTAC | 5 cut(s) | 579, 1619, 1867, 2535, 2994 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 229, 347, 820, 851, 970, 988, 1130 |
| AflIII | ACRYGT | 5 cut(s) | 308, 580, 1112, 2540, 2989 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 870, 2907 |
| AhlI | ACTAGT | 1 cut(s) | 2089 |
| AjnI | CCWGG | 4 cut(s) | 111, 222, 844, 1981 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1823, 1855 |
| AleI | CACNNNNGTG | 1 cut(s) | 3316 |
| Alw26I | GTCTC | 4 cut(s) | 125, 370, 2679, 3221 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 851 |
| Ama87I | CYCGRG | 2 cut(s) | 2816, 3188 |
| AoxI | GGCC | 3 cut(s) | 734, 3146, 3297 |
| ApeKI | GCWGC | 3 cut(s) | 711, 1937, 3099 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2076, 2108 |
| AseI | ATTAAT | 3 cut(s) | 522, 1536, 1680 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1740, 2231 |
| AspLEI | GCGC | 4 cut(s) | 229, 235, 923, 2871 |
| AspS9I | GGNCC | 4 cut(s) | 735, 839, 1750, 2198 |
| AsuHPI | GGTGA | 8 cut(s) | 362, 803, 1259, 1283, 1505, 1598, 1669, 2456 |
| AsuII | TTCGAA | 1 cut(s) | 2082 |
| AvaI | CYCGRG | 2 cut(s) | 2816, 3188 |
| AvaII | GGWCC | 3 cut(s) | 839, 1750, 2198 |
| BamHI | GGATCC | 2 cut(s) | 1174, 2255 |
| BanI | GGYRCC | 1 cut(s) | 2868 |
| BbrPI | CACGTG | 1 cut(s) | 2543 |
| BbsI | GAAGAC | 3 cut(s) | 55, 1979, 3047 |
| BbvI | GCAGC | 3 cut(s) | 698, 1924, 3086 |
| BceAI | ACGGC | 1 cut(s) | 974 |
| BciT130I | CCWGG | 4 cut(s) | 113, 224, 846, 1983 |
| BclI | TGATCA | 1 cut(s) | 1087 |
| BcoDI | GTCTC | 4 cut(s) | 125, 370, 2679, 3221 |
| BcuI | ACTAGT | 1 cut(s) | 2089 |
| BfaI | CTAG | 5 cut(s) | 608, 729, 1148, 1731, 2090 |
| BfmI | CTRYAG | 1 cut(s) | 774 |
| BfoI | RGCGCY | 1 cut(s) | 2872 |
| BisI | GCNGC | 3 cut(s) | 712, 1938, 3100 |
| BlpI | GCTNAGC | 1 cut(s) | 1941 |
| BlsI | GCNGC | 3 cut(s) | 713, 1939, 3101 |
| Bme1390I | CCNGG | 4 cut(s) | 113, 224, 846, 1983 |
| Bme18I | GGWCC | 3 cut(s) | 839, 1750, 2198 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 870, 2907 |
| BmeT110I | CYCGRG | 2 cut(s) | 2816, 3188 |
| BmgT120I | GGNCC | 4 cut(s) | 735, 839, 1750, 2198 |
| BmiI | GGNNCC | 5 cut(s) | 840, 962, 1176, 2257, 2870 |
| BmrFI | CCNGG | 4 cut(s) | 113, 224, 846, 1983 |
| BmsI | GCATC | 8 cut(s) | 488, 1469, 1880, 2149, 2614, 2696, 3263, 3284 |
| BpiI | GAAGAC | 3 cut(s) | 55, 1979, 3047 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 122, 154 |
| BpmI | CTGGAG | 1 cut(s) | 828 |
| Bpu10I | CCTNAGC | 1 cut(s) | 717 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1941 |
| Bpu14I | TTCGAA | 1 cut(s) | 2082 |
| BpuEI | CTTGAG | 8 cut(s) | 193, 203, 1094, 1190, 1442, 1709, 2258, 3137 |
| BsaAI | YACGTR | 3 cut(s) | 325, 581, 2543 |
| BsaBI | GATNNNNATC | 2 cut(s) | 756, 2462 |
| BsaHI | GRCGYC | 1 cut(s) | 2869 |
| BsaI | GGTCTC | 1 cut(s) | 370 |
| BsaJI | CCNNGG | 6 cut(s) | 111, 222, 267, 845, 2437, 3314 |
| BsaWI | WCCGGW | 1 cut(s) | 3302 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 492, 522, 907, 937, 1430, 1460 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 229, 347, 820, 851, 970, 988, 1130 |
| Bse118I | RCCGGY | 1 cut(s) | 3148 |
| Bse1I | ACTGG | 6 cut(s) | 341, 856, 982, 1917, 2128, 2404 |
| Bse3DI | GCAATG | 2 cut(s) | 357, 1725 |
| Bse8I | GATNNNNATC | 2 cut(s) | 756, 2462 |
| BseBI | CCWGG | 4 cut(s) | 113, 224, 846, 1983 |
| BseDI | CCNNGG | 6 cut(s) | 111, 222, 267, 845, 2437, 3314 |
| BseGI | GGATG | 5 cut(s) | 1044, 2140, 2458, 3130, 3275 |
| BseJI | GATNNNNATC | 2 cut(s) | 756, 2462 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 229, 347, 820, 851, 970, 988, 1130 |
| BseMI | GCAATG | 2 cut(s) | 357, 1725 |
| BseMII | CTCAG | 9 cut(s) | 120, 615, 708, 956, 1766, 1955, 2043, 2690, 3215 |
| BseNI | ACTGG | 6 cut(s) | 341, 856, 982, 1917, 2128, 2404 |
| BseRI | GAGGAG | 2 cut(s) | 1439, 1568 |
| BseXI | GCAGC | 3 cut(s) | 698, 1924, 3086 |
| BsgI | GTGCAG | 1 cut(s) | 333 |
| Bsh1236I | CGCG | 2 cut(s) | 235, 2304 |
| BshFI | GGCC | 3 cut(s) | 736, 3148, 3299 |
| BshNI | GGYRCC | 1 cut(s) | 2868 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2816, 3188 |
| BsiSI | CCGG | 2 cut(s) | 3149, 3303 |
| BslFI | GGGAC | 4 cut(s) | 205, 862, 2115, 3242 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 229, 347, 820, 851, 970, 988, 1130 |
| BsmAI | GTCTC | 4 cut(s) | 125, 370, 2679, 3221 |
| BsmBI | CGTCTC | 1 cut(s) | 125 |
| BsmFI | GGGAC | 4 cut(s) | 205, 862, 2115, 3242 |
| BsmI | GAATGC | 2 cut(s) | 2062, 2142 |
| BsnI | GGCC | 3 cut(s) | 736, 3148, 3299 |
| Bso31I | GGTCTC | 1 cut(s) | 370 |
| BsoBI | CYCGRG | 2 cut(s) | 2816, 3188 |
| Bsp119I | TTCGAA | 1 cut(s) | 2082 |
| Bsp1407I | TGTACA | 2 cut(s) | 1617, 2992 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1941 |
| BspACI | CCGC | 2 cut(s) | 1869, 2304 |
| BspANI | GGCC | 3 cut(s) | 736, 3148, 3299 |
| BspCNI | CTCAG | 9 cut(s) | 121, 614, 709, 957, 1767, 1954, 2044, 2689, 3216 |
| BspFNI | CGCG | 2 cut(s) | 235, 2304 |
| BspHI | TCATGA | 2 cut(s) | 558, 2878 |
| BspLI | GGNNCC | 5 cut(s) | 840, 962, 1176, 2257, 2870 |
| BspMAI | CTGCAG | 1 cut(s) | 778 |
| BspT104I | TTCGAA | 1 cut(s) | 2082 |
| BspT107I | GGYRCC | 1 cut(s) | 2868 |
| BspTNI | GGTCTC | 1 cut(s) | 370 |
| BsrDI | GCAATG | 2 cut(s) | 357, 1725 |
| BsrFI | RCCGGY | 1 cut(s) | 3148 |
| BsrGI | TGTACA | 2 cut(s) | 1617, 2992 |
| BsrI | ACTGG | 6 cut(s) | 341, 856, 982, 1917, 2128, 2404 |
| BssAI | RCCGGY | 1 cut(s) | 3148 |
| BssECI | CCNNGG | 6 cut(s) | 111, 222, 267, 845, 2437, 3314 |
| BssNI | GRCGYC | 1 cut(s) | 2869 |
| BssT1I | CCWWGG | 3 cut(s) | 267, 2437, 3314 |
| Bst2UI | CCWGG | 4 cut(s) | 113, 224, 846, 1983 |
| Bst6I | CTCTTC | 1 cut(s) | 2442 |
| BstACI | GRCGYC | 1 cut(s) | 2869 |
| BstAUI | TGTACA | 2 cut(s) | 1617, 2992 |
| BstBAI | YACGTR | 3 cut(s) | 325, 581, 2543 |
| BstBI | TTCGAA | 1 cut(s) | 2082 |
| BstC8I | GCNNGC | 3 cut(s) | 231, 1852, 3237 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 227 |
| BstF5I | GGATG | 5 cut(s) | 1044, 2140, 2458, 3130, 3275 |
| BstFNI | CGCG | 2 cut(s) | 235, 2304 |
| BstH2I | RGCGCY | 1 cut(s) | 2872 |
| BstHHI | GCGC | 4 cut(s) | 229, 235, 923, 2871 |
| BstMAI | GTCTC | 4 cut(s) | 125, 370, 2679, 3221 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 2057 |
| BstNI | CCWGG | 4 cut(s) | 113, 224, 846, 1983 |
| BstNSI | RCATGY | 5 cut(s) | 312, 921, 1116, 1997, 2993 |
| BstSCI | CCNGG | 4 cut(s) | 111, 222, 844, 1981 |
| BstSFI | CTRYAG | 1 cut(s) | 774 |
| BstSNI | TACGTA | 1 cut(s) | 325 |
| BstUI | CGCG | 2 cut(s) | 235, 2304 |
| BstV1I | GCAGC | 3 cut(s) | 698, 1924, 3086 |
| BstV2I | GAAGAC | 3 cut(s) | 55, 1979, 3047 |
| BstX2I | RGATCY | 4 cut(s) | 404, 1174, 2255, 2701 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3144 |
| BstYI | RGATCY | 4 cut(s) | 404, 1174, 2255, 2701 |
| BsuRI | GGCC | 3 cut(s) | 736, 3148, 3299 |
| BtgZI | GCGATG | 1 cut(s) | 2782 |
| BtsCI | GGATG | 5 cut(s) | 1044, 2140, 2458, 3130, 3275 |
| BtsI | GCAGTG | 1 cut(s) | 3178 |
| BtsIMutI | CAGTG | 8 cut(s) | 911, 1378, 1451, 1910, 2469, 2551, 3087, 3178 |
| Cac8I | GCNNGC | 3 cut(s) | 231, 1852, 3237 |
| CaiI | CAGNNNCTG | 1 cut(s) | 851 |
| CciI | TCATGA | 2 cut(s) | 558, 2878 |
| CfoI | GCGC | 4 cut(s) | 229, 235, 923, 2871 |
| Cfr10I | RCCGGY | 1 cut(s) | 3148 |
| Cfr13I | GGNCC | 4 cut(s) | 735, 839, 1750, 2198 |
| CseI | GACGC | 1 cut(s) | 2316 |
| CsiI | ACCWGGT | 1 cut(s) | 1981 |
| Csp6I | GTAC | 5 cut(s) | 578, 1618, 1866, 2534, 2993 |
| CspCI | CAANNNNNGTGG | 5 cut(s) | 30, 916, 951, 3268, 3303 |
| CviQI | GTAC | 5 cut(s) | 578, 1618, 1866, 2534, 2993 |
| DinI | GGCGCC | 1 cut(s) | 2870 |
| DraIII | CACNNNGTG | 2 cut(s) | 744, 1787 |
| DriI | GACNNNNNGTC | 2 cut(s) | 870, 2907 |
| EaeI | YGGCCR | 1 cut(s) | 3146 |
| Eam1104I | CTCTTC | 1 cut(s) | 2442 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 870, 2907 |
| EarI | CTCTTC | 1 cut(s) | 2442 |
| Eco105I | TACGTA | 1 cut(s) | 325 |
| Eco130I | CCWWGG | 3 cut(s) | 267, 2437, 3314 |
| Eco31I | GGTCTC | 1 cut(s) | 370 |
| Eco32I | GATATC | 2 cut(s) | 355, 2190 |
| Eco47I | GGWCC | 3 cut(s) | 839, 1750, 2198 |
| Eco57I | CTGAAG | 2 cut(s) | 1616, 3051 |
| Eco72I | CACGTG | 1 cut(s) | 2543 |
| Eco88I | CYCGRG | 2 cut(s) | 2816, 3188 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 227 |
| EcoO109I | RGGNCCY | 1 cut(s) | 839 |
| EcoRI | GAATTC | 1 cut(s) | 2980 |
| EcoRII | CCWGG | 4 cut(s) | 111, 222, 844, 1981 |
| EcoRV | GATATC | 2 cut(s) | 355, 2190 |
| EcoT14I | CCWWGG | 3 cut(s) | 267, 2437, 3314 |
| EcoT22I | ATGCAT | 2 cut(s) | 2142, 3277 |
| EgeI | GGCGCC | 1 cut(s) | 2870 |
| EheI | GGCGCC | 1 cut(s) | 2870 |
| ErhI | CCWWGG | 3 cut(s) | 267, 2437, 3314 |
| Esp3I | CGTCTC | 1 cut(s) | 125 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2361, 2393, 2756, 2788 |
| FaqI | GGGAC | 4 cut(s) | 205, 862, 2115, 3242 |
| FbaI | TGATCA | 1 cut(s) | 1087 |
| Fnu4HI | GCNGC | 3 cut(s) | 712, 1938, 3100 |
| FokI | GGATG | 5 cut(s) | 1051, 2127, 2465, 3137, 3262 |
| Fsp4HI | GCNGC | 3 cut(s) | 712, 1938, 3100 |
| FspBI | CTAG | 5 cut(s) | 608, 729, 1148, 1731, 2090 |
| GlaI | GCGC | 4 cut(s) | 228, 234, 922, 2870 |
| GluI | GCNGC | 3 cut(s) | 712, 1938, 3100 |
| GsuI | CTGGAG | 1 cut(s) | 828 |
| HaeII | RGCGCY | 1 cut(s) | 2872 |
| HaeIII | GGCC | 3 cut(s) | 736, 3148, 3299 |
| HapII | CCGG | 2 cut(s) | 3149, 3303 |
| HgaI | GACGC | 1 cut(s) | 2316 |
| HhaI | GCGC | 4 cut(s) | 229, 235, 923, 2871 |
| Hin1I | GRCGYC | 1 cut(s) | 2869 |
| Hin6I | GCGC | 4 cut(s) | 227, 233, 921, 2869 |
| HinP1I | GCGC | 4 cut(s) | 227, 233, 921, 2869 |
| HindIII | AAGCTT | 3 cut(s) | 464, 2074, 2852 |
| HpaII | CCGG | 2 cut(s) | 3149, 3303 |
| HphI | GGTGA | 8 cut(s) | 362, 803, 1259, 1283, 1505, 1598, 1669, 2456 |
| Hpy166II | GTNNAC | 7 cut(s) | 511, 553, 1110, 1620, 2770, 2965, 3085 |
| Hpy8I | GTNNAC | 7 cut(s) | 511, 553, 1110, 1620, 2770, 2965, 3085 |
| Hpy99I | CGWCG | 1 cut(s) | 2829 |
| HpyCH4IV | ACGT | 6 cut(s) | 134, 324, 580, 1289, 1547, 2542 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 2057 |
| HpySE526I | ACGT | 6 cut(s) | 134, 324, 580, 1289, 1547, 2542 |
| Hsp92I | GRCGYC | 1 cut(s) | 2869 |
| HspAI | GCGC | 4 cut(s) | 227, 233, 921, 2869 |
| KasI | GGCGCC | 1 cut(s) | 2868 |
| Ksp22I | TGATCA | 1 cut(s) | 1087 |
| LmnI | GCTCC | 5 cut(s) | 45, 329, 928, 966, 2217 |
| Lsp1109I | GCAGC | 3 cut(s) | 698, 1924, 3086 |
| LweI | GCATC | 8 cut(s) | 488, 1469, 1880, 2149, 2614, 2696, 3263, 3284 |
| MabI | ACCWGGT | 1 cut(s) | 1981 |
| MaeI | CTAG | 5 cut(s) | 608, 729, 1148, 1731, 2090 |
| MaeII | ACGT | 6 cut(s) | 134, 324, 580, 1289, 1547, 2542 |
| MaeIII | GTNAC | 7 cut(s) | 115, 152, 876, 949, 1779, 2594, 3074 |
| MfeI | CAATTG | 5 cut(s) | 867, 1745, 1759, 2496, 2638 |
| MflI | RGATCY | 4 cut(s) | 404, 1174, 2255, 2701 |
| Mly113I | GGCGCC | 1 cut(s) | 2869 |
| MlyI | GAGTC | 5 cut(s) | 512, 779, 1160, 1313, 1700 |
| MmeI | TCCRAC | 2 cut(s) | 1115, 1826 |
| Mph1103I | ATGCAT | 2 cut(s) | 2142, 3277 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1740, 2231 |
| MslI | CAYNNNNRTG | 4 cut(s) | 563, 916, 1708, 3316 |
| MspA1I | CMGCKG | 1 cut(s) | 3239 |
| MspI | CCGG | 2 cut(s) | 3149, 3303 |
| MspR9I | CCNGG | 4 cut(s) | 113, 224, 846, 1983 |
| MunI | CAATTG | 5 cut(s) | 867, 1745, 1759, 2496, 2638 |
| Mva1269I | GAATGC | 2 cut(s) | 2062, 2142 |
| MvaI | CCWGG | 4 cut(s) | 113, 224, 846, 1983 |
| MvnI | CGCG | 2 cut(s) | 235, 2304 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 2057 |
| NarI | GGCGCC | 1 cut(s) | 2869 |
| NlaIV | GGNNCC | 5 cut(s) | 840, 962, 1176, 2257, 2870 |
| NmuCI | GTSAC | 3 cut(s) | 876, 949, 1779 |
| NsiI | ATGCAT | 2 cut(s) | 2142, 3277 |
| NspI | RCATGY | 5 cut(s) | 312, 921, 1116, 1997, 2993 |
| NspV | TTCGAA | 1 cut(s) | 2082 |
| OliI | CACNNNNGTG | 1 cut(s) | 3316 |
| PaeR7I | CTCGAG | 1 cut(s) | 3188 |
| PagI | TCATGA | 2 cut(s) | 558, 2878 |
| PciI | ACATGT | 3 cut(s) | 308, 1112, 2989 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 146 |
| PctI | GAATGC | 2 cut(s) | 2062, 2142 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1740, 2231 |
| PflFI | GACNNNGTC | 1 cut(s) | 2584 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 347, 851, 988, 1130 |
| PkrI | GCNGC | 3 cut(s) | 713, 1939, 3101 |
| PleI | GAGTC | 5 cut(s) | 511, 778, 1159, 1313, 1699 |
| PluTI | GGCGCC | 1 cut(s) | 2872 |
| PmaCI | CACGTG | 1 cut(s) | 2543 |
| PmlI | CACGTG | 1 cut(s) | 2543 |
| PpsI | GAGTC | 5 cut(s) | 511, 778, 1159, 1313, 1699 |
| Ppu21I | YACGTR | 3 cut(s) | 325, 581, 2543 |
| PpuMI | RGGWCCY | 1 cut(s) | 839 |
| PscI | ACATGT | 3 cut(s) | 308, 1112, 2989 |
| PshBI | ATTAAT | 3 cut(s) | 522, 1536, 1680 |
| PsiI | TTATAA | 1 cut(s) | 1230 |
| Psp5II | RGGWCCY | 1 cut(s) | 839 |
| Psp6I | CCWGG | 4 cut(s) | 111, 222, 844, 1981 |
| PspCI | CACGTG | 1 cut(s) | 2543 |
| PspGI | CCWGG | 4 cut(s) | 111, 222, 844, 1981 |
| PspN4I | GGNNCC | 5 cut(s) | 840, 962, 1176, 2257, 2870 |
| PspPI | GGNCC | 4 cut(s) | 735, 839, 1750, 2198 |
| PspPPI | RGGWCCY | 1 cut(s) | 839 |
| PstI | CTGCAG | 1 cut(s) | 778 |
| PstNI | CAGNNNCTG | 1 cut(s) | 851 |
| PsuI | RGATCY | 4 cut(s) | 404, 1174, 2255, 2701 |
| PsyI | GACNNNGTC | 1 cut(s) | 2584 |
| PvuII | CAGCTG | 1 cut(s) | 3239 |
| RsaI | GTAC | 5 cut(s) | 579, 1619, 1867, 2535, 2994 |
| RsaNI | GTAC | 5 cut(s) | 578, 1618, 1866, 2534, 2993 |
| RseI | CAYNNNNRTG | 4 cut(s) | 563, 916, 1708, 3316 |
| SatI | GCNGC | 3 cut(s) | 712, 1938, 3100 |
| Sau96I | GGNCC | 4 cut(s) | 735, 839, 1750, 2198 |
| SchI | GAGTC | 5 cut(s) | 512, 779, 1160, 1313, 1700 |
| ScrFI | CCNGG | 4 cut(s) | 113, 224, 846, 1983 |
| SexAI | ACCWGGT | 1 cut(s) | 1981 |
| SfaNI | GCATC | 8 cut(s) | 488, 1469, 1880, 2149, 2614, 2696, 3263, 3284 |
| SfcI | CTRYAG | 1 cut(s) | 774 |
| SfoI | GGCGCC | 1 cut(s) | 2870 |
| Sfr274I | CTCGAG | 1 cut(s) | 3188 |
| SfuI | TTCGAA | 1 cut(s) | 2082 |
| SinI | GGWCC | 3 cut(s) | 839, 1750, 2198 |
| SlaI | CTCGAG | 1 cut(s) | 3188 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 563, 916, 1708, 3316 |
| SmlI | CTYRAG | 9 cut(s) | 182, 208, 1073, 1169, 1421, 1688, 2237, 3116, 3188 |
| SmoI | CTYRAG | 9 cut(s) | 182, 208, 1073, 1169, 1421, 1688, 2237, 3116, 3188 |
| SnaBI | TACGTA | 1 cut(s) | 325 |
| SpeI | ACTAGT | 1 cut(s) | 2089 |
| SsiI | CCGC | 2 cut(s) | 1869, 2304 |
| SspDI | GGCGCC | 1 cut(s) | 2868 |
| SspI | AATATT | 4 cut(s) | 637, 934, 1860, 3158 |
| SspMI | CTAG | 5 cut(s) | 608, 729, 1148, 1731, 2090 |
| StyD4I | CCNGG | 4 cut(s) | 111, 222, 844, 1981 |
| StyI | CCWWGG | 3 cut(s) | 267, 2437, 3314 |
| TaiI | ACGT | 6 cut(s) | 137, 327, 583, 1292, 1550, 2545 |
| TaqI | TCGA | 6 cut(s) | 140, 1990, 2082, 2134, 2934, 3189 |
| TatI | WGTACW | 3 cut(s) | 1617, 2533, 2992 |
| TscAI | CASTG | 8 cut(s) | 918, 1378, 1458, 1917, 2476, 2558, 3087, 3178 |
| TseFI | GTSAC | 3 cut(s) | 876, 949, 1779 |
| TseI | GCWGC | 3 cut(s) | 711, 1937, 3099 |
| Tsp45I | GTSAC | 3 cut(s) | 876, 949, 1779 |
| TspGWI | ACGGA | 3 cut(s) | 465, 1910, 2396 |
| TspRI | CASTG | 8 cut(s) | 918, 1378, 1458, 1917, 2476, 2558, 3087, 3178 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2584 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 347, 851, 988, 1130 |
| VpaK11BI | GGWCC | 3 cut(s) | 839, 1750, 2198 |
| VspI | ATTAAT | 3 cut(s) | 522, 1536, 1680 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 227 |
| XceI | RCATGY | 5 cut(s) | 312, 921, 1116, 1997, 2993 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1131 |
| XhoI | CTCGAG | 1 cut(s) | 3188 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1740, 2231 |
| XspI | CTAG | 5 cut(s) | 608, 729, 1148, 1731, 2090 |
| Zsp2I | ATGCAT | 2 cut(s) | 2142, 3277 |