FvH4_3g00170

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000279
Physical Location & Seq
Forward (+)
99717 .. 107513
7797 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00170.t1

Sequence Viewer

Length: 3717 bp
ATGGGGAAGAAGAGTAAACTTGCGTCAGATACTAGAAGCCTAGTCGATTTGGTATTCTCTTGGTCTCTAGAGGATGTTCTCAATGAAAATCTTTACAGAAATCAGGTGCAGAGGATCCCCGACACATTTCACACAGTGACGAGTTACAAGAAAACATTCATTCCTTCACTTGTTGAGGAAACTCATGCTGATTTACTATCGAATGTGTCGATTCTGCCACATGCACCTACTTGTGAAATTCTGACAATCATGGATTCCGATAAATCTTCTGATGACTTGTTTTACGATGTAACGTATAAGAGAGATATGGAAACTAATGAGAATGACAAAGAACTGATGTATGAGCCACAGGCTGGAGATATCATTGCCTTGACAAATGTTAGACCAAAATGCATTGATGATTTGAACAGGCCTCCAAGGTTCTATCTTATAGCCTATGTTGCTAAAGCATATGATATTGATGAATATCCTGATCTCCTCCAGTTCAAAATAGTGTCATCGAAGCCTATCAACTATGGAGAGCTACGCATGAATAAGAGCAAGAGAGAAACACTTTTTGCTGTCCGTCTTATAAACTTGATTACAAATGTCCGTGTATGGAAGGCTTTGAACTCAGAAGAGGGGAATACAAATATCATTAACAAAGTTCTGCAACCCAAGCCAGATGATGGGGATTCTTGTTCAGTCTGCTTCTCCAAAGAAAAATGCTGCACTAGAATTTCTGATATATGGCCTACAATTCGCTCCCAAAATCTAAATGATTCCCAAGAAGCTGCAGTTTTGAACTGTATCAATTTGTCTCAATGTCATCACCAGAATTCTGTAAAATTAATATGGGGTCCTCCTGGTACTGGCAAGACAAAGACAATGAGTCTGACACTCTTTGCGCTATTTCAGTTGAAGTGCAGAACTCTCACATGTGCTCCCACCAATATTGCCGTGCTAGAAATTGCAGCAAGGCTCCGAAGATCGGTTAATCAGTTACTTGAGTATGGCGGGTATGGACTAGGAGATATAGTTCTCTTTGGTAACAAAAAGCGAATGAAGATTGACAATAAAGATGATGTGCGTGACATATTTCTTGATCATCGTGTTAAAATCCTCATCAAGTGTTTGGTTCCTTTGTCTGGGTGGAAACATTTGTTATCATCAATGATACATTTACTTGATGATCCAGTGGAACATTATTCTATGTATTTGCAAAAGAGAGCTGCAAAGCAAAAACAGAATGCAGAAAAAAATGAGGAGGATGATCGAACTGAGGATTATCTTTTGACATTTGAGGAGTTTGTGAAGAATGAATTTGATTCAGTCAGTCAGGACCTGAAGATTTGTATGACAGGTTTGTACACCCACTTACCAACTTCTTGCATTTCACTCGAAGTGGTAAAGGACATGGTAAGAGCTTTGGGTTTGCTCAAGTCTATTAAATCTTCATTGCATACTATTGGTGCTGCTAATGAAGGATTGAAGCTAGTCCTCAATGACTTCAAAGTTCCCGGAAGCACTGTTGGTTGCCTCAGGCAGCTGAGAACAAAATGTACAAACACACTGAAGTCCCTTCCAATGGAATTCTCTGTTCCTATTTCCGAATATGCATTAAAGGACTTCTGCCTAGAAAATGCTTGCTTAATATTCTGTACCGCATCAACTTCTTCCAAATTGCATATTGTAGCAGAAACAAGACCATTGGAATTGTTGGTCATTGACGAGGCTGCTCAGCTTAAAGAATGTGAATCAGCAATTCCTTTACAAATATCTGGTCTCCGCCATGCTATCCTTGTAGGAGATGAGTTGCAACTCCCTGCCATGGTTCAAAGCAAGATTGCAGCAAGTGCTGATTTTGGAAGAAGTTTGTTTGAAAGGCTGGCAAAGTTGGGACACAAGAAGCACCTGCTCAATGTCCAGTACAGGATGCATCCATCCATCAGTTTATTTCCAAAAAAGGAGTTCTACGACAACCAGATAGTAGATGGTCCAAATGTTAAAGAAACAAGCTACAAGAGATTCTTCCTCAAGGGAAAAATGTACGGATCTTATTCCTTCATAAATGTTGCCAATGGAAAAGATGAATTTGATCACAGACGTAGTCGGAAAAATATGGTGGAGGTTGCTGTAGTCTCTGAGATAGTAGCAAGCCTTTATAAAGAATTTAGAAGGACAAAGAAGAAAGTTAGTATTGGTGTCATATCACCATACAAGGCTCAAGTTTATGCAATTCAAAAGATACTCACAAAATCTACTGGAACTTCTGATACTGGCTTCTCCGTAAGTGTGCGATCTGTTGATGGGTTCCAAGGTGGTGAAGAAGATGTGATAATTATATCTACTGTGCGATGTAATGGGAACGGGTCAGTTGGTTTTATGTCAAACATGCAAAGAGCAAATGTTGCACTTACACGTGCAAGGTATTGCCTTTGGATAGTGGGTAATGCGTCAACTTTGGTTACAAGTGACTCTGTTTGGAAGAAGCTTGTCCTTGATGCCAAGAAACGGAACTGTTTTCATAATGCTGATGAAGACAGCAACTTGGCTCAGGCTATTACAACTGCCCTGCTAGAGCTTGACCAACTTCATTCTCTGCTTAATATCGGCTCTATGCTGTTCAAAAACGCTATATGGAAGGTTTGCTTCACTGGTGACTTTTTGAACTCCATAAGAAAAATTAAAGATACTGCGATTCTAGGGGAAGTGCTTGCGTTATTAACCAGCCTTTCACGTGGATGGCGCTCTCCTCACAAGGATAAAGGAAATGTAGTGTATGATGGAACTTCTGCTCAGCTGTTAGAGAAGTATAAAATCAAAGGGCACATGAATATCATTTGGACTGTAGATATTATCCAGGAGAATGCACATTATGTCCAAGTTATAAAGTTTTGGGATATTTTGCCATTTTCTCATTTACCAGAACTAGCAAAGCGTCTTGACATTGTTTTTGGAAAATTTACAGTGGATAAGATGAACCGCTGCAAGCACAAATGCATTGACAGGGATACTGTTGTTCCAATGAGATGGCCGGTGGTTTTCAGCAACTTCCCTGTAGATGATCATGACGAGTTCCTTTCAAAGCCATTGTCTTCTCTCATTATTACAGCTAATCCAAGAACGTCGACAACAGCATATGGGGAGACAGCAAAAGCAGTAAAATCGATTATCCGTTCTAAGAACAACATTAATAAAAAAGAAAGATTGTTATGGAAAATGAAGTCTGAAGACGGAGTGAAGGATTTCAGCACTTGCCTTGAAGCTGATCCTGTGGAGTTCTTGTCAAAACCATTATCATCACCGAGTCTAGCAGATAAGCCAGAAGCATCTGCTTCCACTGACATGGAAATTGCAGAAAGATACAGTAACAAAAGCAGTTCAAAAAGCATCGTGAATCGAAGAATAAAATCATCATGGAAACTAAAAGTTGGAGGGTGTAGTTCGCAAAACACCAAATTATCTGAACACCATGAAACACCGTCAAGCCAATATCAAGCCGACGGGGTGAAAGACAAAGACTCAGATGACATGAATCGGTTTTACTTGAGGACAGATGACGCAGATCACTATTCGGATGTATCTGCAGGGAGGAGAGTAAAGTCAGTAAACTGGCAAAAAAAGTTGATTGGAGCTGGCATGGAGGATGCTGATTTTTCTGTTAAGTCAACTGGAGACAAAAAGAAGTCGATGAAAAATCAGAAAAGGGTCTGTGTTAAAGGCACCAGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

1239

Amino Acids

139.7

Weight (kDa)

8.94

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 76 - 205 8.2e-13 Domain of unknown function (DUF6469)
AAA_11 PF13086 251 - 608 3e-32 AAA domain
AAA_12 PF13087 616 - 812 6.7e-58 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 572, 2145, 2870
AarI CACCTGC 1 cut(s) 1902
Acc36I ACCTGC 1 cut(s) 1902
AccB1I GGYRCC 1 cut(s) 3704
AccB7I CCANNNNNTGG 2 cut(s) 353, 668
AccI GTMKAC 1 cut(s) 3110
AciI CCGC 4 cut(s) 996, 1644, 1768, 2965
AclWI GGATC 5 cut(s) 109, 122, 1166, 2041, 3245
AcoI YGGCCR 1 cut(s) 3014
AcsI RAATTY 8 cut(s) 237, 717, 817, 1301, 1571, 2072, 2150, 2942
AcuI CTGAAG 3 cut(s) 1346, 1574, 3231
AcvI CACGTG 2 cut(s) 2402, 2720
AdeI CACNNNGTG 1 cut(s) 136
AfaI GTAC 6 cut(s) 850, 1349, 1543, 1642, 1910, 2030
AfiI CCNNNNNNNGG 8 cut(s) 353, 668, 851, 970, 1127, 1567, 1810, 2493
AflIII ACRYGT 2 cut(s) 917, 2399
AhdI GACNNNNNGTC 1 cut(s) 870
AjnI CCWGG 2 cut(s) 844, 2841
AloI GAACNNNNNNTCC 2 cut(s) 1002, 1034
Alw21I GWGCWC 1 cut(s) 925
Alw26I GTCTC 6 cut(s) 69, 804, 1769, 2125, 3122, 3651
AlwI GGATC 5 cut(s) 109, 122, 1166, 2041, 3245
AlwNI CAGNNNCTG 1 cut(s) 1324
AoxI GGCC 3 cut(s) 410, 731, 3014
ApeKI GCWGC 9 cut(s) 708, 773, 953, 1211, 1454, 1525, 1715, 1829, 2967
ApoI RAATTY 8 cut(s) 237, 717, 817, 1301, 1571, 2072, 2150, 2942
ArsI GACNNNNNNTTYG 6 cut(s) 1747, 1779, 2918, 2950, 3059, 3091
AseI ATTAAT 2 cut(s) 830, 3174
Asp700I GAANNNNTTC 2 cut(s) 155, 3227
AspLEI GCGC 2 cut(s) 889, 2730
AspS9I GGNCC 3 cut(s) 839, 1321, 1976
AsuC2I CCSGG 1 cut(s) 1500
AsuHPI GGTGA 6 cut(s) 803, 2184, 2315, 2651, 3276, 3502
AvaII GGWCC 3 cut(s) 839, 1321, 1976
AxyI CCTNAGG 1 cut(s) 1520
BaeGI GKGCMC 1 cut(s) 2811
BaeI ACNNNNGTAYC 2 cut(s) 2985, 3018
BamHI GGATCC 1 cut(s) 114
BanI GGYRCC 1 cut(s) 3704
BbrPI CACGTG 2 cut(s) 2402, 2720
BbsI GAAGAC 3 cut(s) 2526, 3069, 3219
Bbv12I GWGCWC 1 cut(s) 925
BbvI GCAGC 9 cut(s) 695, 760, 965, 1198, 1441, 1537, 1702, 1841, 2954
BccI CCATC 8 cut(s) 662, 1930, 1934, 1967, 2282, 2718, 2759, 3006
BceAI ACGGC 1 cut(s) 923
BcgI CGANNNNNNTGC 4 cut(s) 1360, 1394, 3129, 3163
BciT130I CCWGG 2 cut(s) 846, 2843
BciVI GTATCC 1 cut(s) 2986
BclI TGATCA 3 cut(s) 1084, 2077, 3046
BcnI CCSGG 1 cut(s) 1500
BcoDI GTCTC 6 cut(s) 69, 804, 1769, 2125, 3122, 3651
BfmI CTRYAG 5 cut(s) 774, 2115, 2829, 3039, 3567
BfoI RGCGCY 1 cut(s) 2731
BfuAI ACCTGC 1 cut(s) 1902
BfuI GTATCC 1 cut(s) 2986
BisI GCNGC 9 cut(s) 709, 774, 954, 1212, 1455, 1526, 1716, 1830, 2968
BlpI GCTNAGC 2 cut(s) 1719, 2778
BlsI GCNGC 9 cut(s) 710, 775, 955, 1213, 1456, 1527, 1717, 1831, 2969
Bme1390I CCNGG 3 cut(s) 846, 1500, 2843
Bme18I GGWCC 3 cut(s) 839, 1321, 1976
BmeRI GACNNNNNGTC 1 cut(s) 870
BmgT120I GGNCC 3 cut(s) 839, 1321, 1976
BmiI GGNNCC 6 cut(s) 116, 840, 962, 1119, 2294, 3706
BmrFI CCNGG 3 cut(s) 846, 1500, 2843
BmsI GCATC 7 cut(s) 1655, 1905, 1927, 2473, 3320, 3381, 3619
BpiI GAAGAC 3 cut(s) 2526, 3069, 3219
BpmI CTGGAG 3 cut(s) 375, 464, 3675
Bpu10I CCTNAGC 1 cut(s) 2535
Bpu1102I GCTNAGC 2 cut(s) 1719, 2778
BpuEI CTTGAG 5 cut(s) 1007, 1403, 2000, 2190, 3550
BpuMI CCSGG 1 cut(s) 1500
Bsa29I ATCGAT 1 cut(s) 3149
BsaAI YACGTR 2 cut(s) 2402, 2720
BsaBI GATNNNNATC 1 cut(s) 465
BsaI GGTCTC 2 cut(s) 69, 1769
BsaJI CCNNGG 3 cut(s) 416, 1809, 2296
BsaXI ACNNNNNCTCC 6 cut(s) 907, 937, 1002, 1032, 3251, 3281
Bsc4I CCNNNNNNNGG 8 cut(s) 353, 668, 851, 970, 1127, 1567, 1810, 2493
Bse118I RCCGGY 1 cut(s) 3016
Bse1I ACTGG 9 cut(s) 481, 856, 1175, 1906, 2248, 2263, 2641, 3599, 3658
Bse21I CCTNAGG 1 cut(s) 1520
Bse3DI GCAATG 2 cut(s) 363, 1436
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 2 cut(s) 846, 2843
BseCI ATCGAT 1 cut(s) 3149
BseDI CCNNGG 3 cut(s) 416, 1809, 2296
BseGI GGATG 8 cut(s) 79, 1255, 1918, 1920, 1922, 2729, 3565, 3634
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 8 cut(s) 353, 668, 851, 970, 1127, 1567, 1810, 2493
BseMI GCAATG 2 cut(s) 363, 1436
BseMII CTCAG 9 cut(s) 627, 1251, 1520, 1534, 1733, 2115, 2549, 2792, 3519
BseNI ACTGG 9 cut(s) 481, 856, 1175, 1906, 2248, 2263, 2641, 3599, 3658
BseRI GAGGAG 5 cut(s) 467, 1259, 1298, 2724, 3589
BseSI GKGCMC 1 cut(s) 2811
BseXI GCAGC 9 cut(s) 695, 760, 965, 1198, 1441, 1537, 1702, 1841, 2954
BsgI GTGCAG 3 cut(s) 128, 694, 925
BshFI GGCC 3 cut(s) 412, 733, 3016
BshNI GGYRCC 1 cut(s) 3704
BshVI ATCGAT 1 cut(s) 3149
BsiHKAI GWGCWC 1 cut(s) 925
BsiSI CCGG 2 cut(s) 1500, 3017
BslFI GGGAC 2 cut(s) 1543, 1893
BslI CCNNNNNNNGG 8 cut(s) 353, 668, 851, 970, 1127, 1567, 1810, 2493
BsmAI GTCTC 6 cut(s) 69, 804, 1769, 2125, 3122, 3651
BsmFI GGGAC 2 cut(s) 1543, 1893
BsmI GAATGC 2 cut(s) 1234, 2854
BsnI GGCC 3 cut(s) 412, 733, 3016
Bso31I GGTCTC 2 cut(s) 69, 1769
Bsp1286I GDGCHC 2 cut(s) 925, 2811
Bsp1407I TGTACA 2 cut(s) 1347, 1541
Bsp1720I GCTNAGC 2 cut(s) 1719, 2778
Bsp19I CCATGG 1 cut(s) 1809
BspACI CCGC 4 cut(s) 996, 1644, 1768, 2965
BspANI GGCC 3 cut(s) 412, 733, 3016
BspCNI CTCAG 9 cut(s) 626, 1252, 1521, 1533, 1732, 2116, 2548, 2791, 3518
BspDI ATCGAT 1 cut(s) 3149
BspHI TCATGA 1 cut(s) 3049
BspLI GGNNCC 6 cut(s) 116, 840, 962, 1119, 2294, 3706
BspMAI CTGCAG 2 cut(s) 778, 3571
BspMI ACCTGC 1 cut(s) 1902
BspPI GGATC 5 cut(s) 109, 122, 1166, 2041, 3245
BspT107I GGYRCC 1 cut(s) 3704
BspTNI GGTCTC 2 cut(s) 69, 1769
BsrDI GCAATG 2 cut(s) 363, 1436
BsrFI RCCGGY 1 cut(s) 3016
BsrGI TGTACA 2 cut(s) 1347, 1541
BsrI ACTGG 9 cut(s) 481, 856, 1175, 1906, 2248, 2263, 2641, 3599, 3658
BssAI RCCGGY 1 cut(s) 3016
BssECI CCNNGG 3 cut(s) 416, 1809, 2296
BssT1I CCWWGG 3 cut(s) 416, 1809, 2296
Bst2UI CCWGG 2 cut(s) 846, 2843
Bst6I CTCTTC 2 cut(s) 5, 612
BstAPI GCANNNNNTGC 2 cut(s) 1835, 2390
BstAUI TGTACA 2 cut(s) 1347, 1541
BstBAI YACGTR 2 cut(s) 2402, 2720
BstC8I GCNNGC 6 cut(s) 1627, 1869, 2137, 2697, 2972, 3619
BstDSI CCRYGG 1 cut(s) 1809
BstF5I GGATG 8 cut(s) 79, 1255, 1918, 1920, 1922, 2729, 3565, 3634
BstH2I RGCGCY 1 cut(s) 2731
BstHHI GCGC 2 cut(s) 889, 2730
BstMAI GTCTC 6 cut(s) 69, 804, 1769, 2125, 3122, 3651
BstMWI GCNNNNNNNGC 4 cut(s) 440, 658, 1835, 2390
BstNI CCWGG 2 cut(s) 846, 2843
BstNSI RCATGY 3 cut(s) 224, 921, 2377
BstSCI CCNGG 3 cut(s) 844, 1498, 2841
BstSFI CTRYAG 5 cut(s) 774, 2115, 2829, 3039, 3567
BstSLI GKGCMC 1 cut(s) 2811
BstV1I GCAGC 9 cut(s) 695, 760, 965, 1198, 1441, 1537, 1702, 1841, 2954
BstV2I GAAGAC 3 cut(s) 2526, 3069, 3219
BstX2I RGATCY 2 cut(s) 114, 2033
BstXI CCANNNNNNTGG 2 cut(s) 3012, 3328
BstYI RGATCY 2 cut(s) 114, 2033
Bsu15I ATCGAT 1 cut(s) 3149
Bsu36I CCTNAGG 1 cut(s) 1520
BsuI GTATCC 1 cut(s) 2986
BsuRI GGCC 3 cut(s) 412, 733, 3016
BsuTUI ATCGAT 1 cut(s) 3149
BtgI CCRYGG 1 cut(s) 1809
BtgZI GCGATG 1 cut(s) 2350
BtsCI GGATG 8 cut(s) 79, 1255, 1918, 1920, 1922, 2729, 3565, 3634
BtsIMutI CAGTG 7 cut(s) 141, 1182, 1506, 1550, 2634, 2955, 3321
BveI ACCTGC 1 cut(s) 1902
Cac8I GCNNGC 6 cut(s) 1627, 1869, 2137, 2697, 2972, 3619
CaiI CAGNNNCTG 1 cut(s) 1324
CciI TCATGA 1 cut(s) 3049
CfoI GCGC 2 cut(s) 889, 2730
Cfr10I RCCGGY 1 cut(s) 3016
Cfr13I GGNCC 3 cut(s) 839, 1321, 1976
ClaI ATCGAT 1 cut(s) 3149
CseI GACGC 4 cut(s) 12, 2424, 2909, 3551
Csp6I GTAC 6 cut(s) 849, 1348, 1542, 1641, 1909, 2029
CspCI CAANNNNNGTGG 2 cut(s) 916, 951
CviQI GTAC 6 cut(s) 849, 1348, 1542, 1641, 1909, 2029
DraIII CACNNNGTG 1 cut(s) 136
DriI GACNNNNNGTC 1 cut(s) 870
EaeI YGGCCR 1 cut(s) 3014
Eam1104I CTCTTC 2 cut(s) 5, 612
Eam1105I GACNNNNNGTC 1 cut(s) 870
EarI CTCTTC 2 cut(s) 5, 612
EciI GGCGGA 1 cut(s) 1757
Eco130I CCWWGG 3 cut(s) 416, 1809, 2296
Eco147I AGGCCT 1 cut(s) 412
Eco31I GGTCTC 2 cut(s) 69, 1769
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 3 cut(s) 839, 1321, 1976
Eco57I CTGAAG 3 cut(s) 1346, 1574, 3231
Eco72I CACGTG 2 cut(s) 2402, 2720
Eco81I CCTNAGG 1 cut(s) 1520
EcoO109I RGGNCCY 2 cut(s) 839, 1321
EcoRI GAATTC 2 cut(s) 817, 1571
EcoRII CCWGG 2 cut(s) 844, 2841
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 3 cut(s) 416, 1809, 2296
EcoT22I ATGCAT 4 cut(s) 395, 1600, 1920, 2984
ErhI CCWWGG 3 cut(s) 416, 1809, 2296
FalI AAGNNNNNCTT 4 cut(s) 1994, 2026, 2615, 2647
FaqI GGGAC 2 cut(s) 1543, 1893
FauI CCCGC 1 cut(s) 989
FauNDI CATATG 2 cut(s) 451, 3121
FbaI TGATCA 3 cut(s) 1084, 2077, 3046
FblI GTMKAC 1 cut(s) 3110
Fnu4HI GCNGC 9 cut(s) 709, 774, 954, 1212, 1455, 1526, 1716, 1830, 2968
FokI GGATG 8 cut(s) 86, 1262, 1905, 1909, 1927, 2736, 3572, 3641
Fsp4HI GCNGC 9 cut(s) 709, 774, 954, 1212, 1455, 1526, 1716, 1830, 2968
GlaI GCGC 2 cut(s) 888, 2729
GluI GCNGC 9 cut(s) 709, 774, 954, 1212, 1455, 1526, 1716, 1830, 2968
GsuI CTGGAG 3 cut(s) 375, 464, 3675
HaeII RGCGCY 1 cut(s) 2731
HaeIII GGCC 3 cut(s) 412, 733, 3016
HapII CCGG 2 cut(s) 1500, 3017
HgaI GACGC 4 cut(s) 12, 2424, 2909, 3551
HhaI GCGC 2 cut(s) 889, 2730
Hin6I GCGC 2 cut(s) 887, 2728
HinP1I GCGC 2 cut(s) 887, 2728
HincII GTYRAC 3 cut(s) 2439, 3111, 3651
HindII GTYRAC 3 cut(s) 2439, 3111, 3651
HindIII AAGCTT 1 cut(s) 2471
HpaII CCGG 2 cut(s) 1500, 3017
HphI GGTGA 6 cut(s) 803, 2184, 2315, 2651, 3276, 3502
Hpy166II GTNNAC 6 cut(s) 17, 1350, 2439, 3111, 3592, 3651
Hpy188III TCNNGA 7 cut(s) 68, 470, 1082, 1319, 2924, 3050, 3376
Hpy8I GTNNAC 6 cut(s) 17, 1350, 2439, 3111, 3592, 3651
Hpy99I CGWCG 2 cut(s) 3112, 3488
HpyAV CCTTC 8 cut(s) 174, 595, 1457, 1571, 2053, 2151, 2617, 3217
HpyCH4IV ACGT 5 cut(s) 293, 2086, 2401, 2719, 3107
HpyF10VI GCNNNNNNNGC 4 cut(s) 440, 658, 1835, 2390
HpySE526I ACGT 5 cut(s) 293, 2086, 2401, 2719, 3107
HspAI GCGC 2 cut(s) 887, 2728
Ksp22I TGATCA 3 cut(s) 1084, 2077, 3046
LmnI GCTCC 4 cut(s) 749, 928, 966, 3614
Lsp1109I GCAGC 9 cut(s) 695, 760, 965, 1198, 1441, 1537, 1702, 1841, 2954
LweI GCATC 7 cut(s) 1655, 1905, 1927, 2473, 3320, 3381, 3619
MaeII ACGT 5 cut(s) 293, 2086, 2401, 2719, 3107
MflI RGATCY 2 cut(s) 114, 2033
MhlI GDGCHC 2 cut(s) 925, 2811
MlyI GAGTC 4 cut(s) 880, 2450, 3298, 3497
MmeI TCCRAC 2 cut(s) 2072, 3394
Mph1103I ATGCAT 4 cut(s) 395, 1600, 1920, 2984
MroXI GAANNNNTTC 2 cut(s) 155, 3227
MslI CAYNNNNRTG 2 cut(s) 2722, 3326
MspA1I CMGCKG 3 cut(s) 1528, 2782, 2967
MspI CCGG 2 cut(s) 1500, 3017
MspR9I CCNGG 3 cut(s) 846, 1500, 2843
Mva1269I GAATGC 2 cut(s) 1234, 2854
MvaI CCWGG 2 cut(s) 846, 2843
MwoI GCNNNNNNNGC 4 cut(s) 440, 658, 1835, 2390
NciI CCSGG 1 cut(s) 1500
NcoI CCATGG 1 cut(s) 1809
NdeI CATATG 2 cut(s) 451, 3121
NlaIV GGNNCC 6 cut(s) 116, 840, 962, 1119, 2294, 3706
NmuCI GTSAC 4 cut(s) 136, 1070, 2453, 2639
NsiI ATGCAT 4 cut(s) 395, 1600, 1920, 2984
NspI RCATGY 3 cut(s) 224, 921, 2377
PagI TCATGA 1 cut(s) 3049
PaqCI CACCTGC 1 cut(s) 1902
PceI AGGCCT 1 cut(s) 412
PciI ACATGT 1 cut(s) 917
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PctI GAATGC 2 cut(s) 1234, 2854
PdmI GAANNNNTTC 2 cut(s) 155, 3227
PflFI GACNNNGTC 1 cut(s) 2088
PflMI CCANNNNNTGG 2 cut(s) 353, 668
PfoI TCCNGGA 2 cut(s) 1498, 2841
PkrI GCNGC 9 cut(s) 710, 775, 955, 1213, 1456, 1527, 1717, 1831, 2969
PleI GAGTC 4 cut(s) 879, 2450, 3297, 3497
PmaCI CACGTG 2 cut(s) 2402, 2720
PmlI CACGTG 2 cut(s) 2402, 2720
PpsI GAGTC 4 cut(s) 879, 2450, 3297, 3497
Ppu21I YACGTR 2 cut(s) 2402, 2720
PpuMI RGGWCCY 2 cut(s) 839, 1321
PscI ACATGT 1 cut(s) 917
PshBI ATTAAT 2 cut(s) 830, 3174
PsiI TTATAA 3 cut(s) 572, 2145, 2870
Psp5II RGGWCCY 2 cut(s) 839, 1321
Psp6I CCWGG 2 cut(s) 844, 2841
PspCI CACGTG 2 cut(s) 2402, 2720
PspGI CCWGG 2 cut(s) 844, 2841
PspN4I GGNNCC 6 cut(s) 116, 840, 962, 1119, 2294, 3706
PspPI GGNCC 3 cut(s) 839, 1321, 1976
PspPPI RGGWCCY 2 cut(s) 839, 1321
PsrI GAACNNNNNNTAC 4 cut(s) 1525, 1557, 2239, 2271
PstI CTGCAG 2 cut(s) 778, 3571
PstNI CAGNNNCTG 1 cut(s) 1324
PsuI RGATCY 2 cut(s) 114, 2033
PsyI GACNNNGTC 1 cut(s) 2088
PvuII CAGCTG 2 cut(s) 1528, 2782
RsaI GTAC 6 cut(s) 850, 1349, 1543, 1642, 1910, 2030
RsaNI GTAC 6 cut(s) 849, 1348, 1542, 1641, 1909, 2029
RseI CAYNNNNRTG 2 cut(s) 2722, 3326
SalI GTCGAC 1 cut(s) 3109
SatI GCNGC 9 cut(s) 709, 774, 954, 1212, 1455, 1526, 1716, 1830, 2968
Sau96I GGNCC 3 cut(s) 839, 1321, 1976
SchI GAGTC 4 cut(s) 880, 2450, 3298, 3497
ScrFI CCNGG 3 cut(s) 846, 1500, 2843
SduI GDGCHC 2 cut(s) 925, 2811
SfaNI GCATC 7 cut(s) 1655, 1905, 1927, 2473, 3320, 3381, 3619
SfcI CTRYAG 5 cut(s) 774, 2115, 2829, 3039, 3567
SinI GGWCC 3 cut(s) 839, 1321, 1976
SmiMI CAYNNNNRTG 2 cut(s) 2722, 3326
SmlI CTYRAG 5 cut(s) 986, 1418, 2015, 2205, 3529
SmoI CTYRAG 5 cut(s) 986, 1418, 2015, 2205, 3529
SseBI AGGCCT 1 cut(s) 412
SsiI CCGC 4 cut(s) 996, 1644, 1768, 2965
SspI AATATT 2 cut(s) 934, 1635
StuI AGGCCT 1 cut(s) 412
StyD4I CCNGG 3 cut(s) 844, 1498, 2841
StyI CCWWGG 3 cut(s) 416, 1809, 2296
TaiI ACGT 5 cut(s) 296, 2089, 2404, 2722, 3110
TatI WGTACW 3 cut(s) 1347, 1541, 1908
TscAI CASTG 7 cut(s) 141, 1182, 1513, 1557, 2641, 2955, 3328
TseFI GTSAC 4 cut(s) 136, 1070, 2453, 2639
TseI GCWGC 9 cut(s) 708, 773, 953, 1211, 1454, 1525, 1715, 1829, 2967
Tsp45I GTSAC 4 cut(s) 136, 1070, 2453, 2639
TspGWI ACGGA 7 cut(s) 554, 581, 2046, 2257, 2509, 3146, 3231
TspRI CASTG 7 cut(s) 141, 1182, 1513, 1557, 2641, 2955, 3328
Tth111I GACNNNGTC 1 cut(s) 2088
Van91I CCANNNNNTGG 2 cut(s) 353, 668
VpaK11BI GGWCC 3 cut(s) 839, 1321, 1976
VspI ATTAAT 2 cut(s) 830, 3174
XapI RAATTY 8 cut(s) 237, 717, 817, 1301, 1571, 2072, 2150, 2942
XbaI TCTAGA 1 cut(s) 67
XceI RCATGY 3 cut(s) 224, 921, 2377
XcmI CCANNNNNNNNNTGG 1 cut(s) 1970
XmiI GTMKAC 1 cut(s) 3110
XmnI GAANNNNTTC 2 cut(s) 155, 3227
Zsp2I ATGCAT 4 cut(s) 395, 1600, 1920, 2984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.