AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 125 |
| AcsI | RAATTY | 4 cut(s) | 57, 254, 269, 307 |
| AcuI | CTGAAG | 1 cut(s) | 314 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 86 |
| AgsI | TTSAA | 2 cut(s) | 279, 379 |
| AluBI | AGCT | 2 cut(s) | 170, 292 |
| AluI | AGCT | 2 cut(s) | 170, 292 |
| AlwI | GGATC | 1 cut(s) | 125 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 292 |
| ApoI | RAATTY | 4 cut(s) | 57, 254, 269, 307 |
| AspS9I | GGNCC | 1 cut(s) | 76 |
| AsuHPI | GGTGA | 1 cut(s) | 341 |
| AvaII | GGWCC | 1 cut(s) | 76 |
| AxyI | CCTNAGG | 1 cut(s) | 135 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 295, 327 |
| BclI | TGATCA | 1 cut(s) | 43 |
| Bme18I | GGWCC | 1 cut(s) | 76 |
| BmgT120I | GGNCC | 1 cut(s) | 76 |
| BmiI | GGNNCC | 1 cut(s) | 78 |
| BpuEI | CTTGAG | 1 cut(s) | 347 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 86 |
| Bse1I | ACTGG | 1 cut(s) | 405 |
| Bse21I | CCTNAGG | 1 cut(s) | 135 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 86 |
| BseMII | CTCAG | 2 cut(s) | 126, 402 |
| BseNI | ACTGG | 1 cut(s) | 405 |
| BslFI | GGGAC | 1 cut(s) | 62 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 86 |
| BsmFI | GGGAC | 1 cut(s) | 62 |
| BsmI | GAATGC | 1 cut(s) | 193 |
| Bsp143I | GATC | 3 cut(s) | 22, 43, 130 |
| BspCNI | CTCAG | 2 cut(s) | 127, 401 |
| BspLI | GGNNCC | 1 cut(s) | 78 |
| BspPI | GGATC | 1 cut(s) | 125 |
| BsrI | ACTGG | 1 cut(s) | 405 |
| BssMI | GATC | 3 cut(s) | 22, 43, 130 |
| BstDEI | CTNAG | 2 cut(s) | 135, 388 |
| BstKTI | GATC | 3 cut(s) | 25, 46, 133 |
| BstMBI | GATC | 3 cut(s) | 22, 43, 130 |
| Bsu36I | CCTNAGG | 1 cut(s) | 135 |
| CaiI | CAGNNNCTG | 1 cut(s) | 292 |
| Cfr13I | GGNCC | 1 cut(s) | 76 |
| CviJI | RGCY | 3 cut(s) | 170, 292, 361 |
| CviKI_1 | RGCY | 3 cut(s) | 170, 292, 361 |
| DdeI | CTNAG | 2 cut(s) | 135, 388 |
| DpnI | GATC | 3 cut(s) | 24, 45, 132 |
| DpnII | GATC | 3 cut(s) | 22, 43, 130 |
| Eco47I | GGWCC | 1 cut(s) | 76 |
| Eco57I | CTGAAG | 1 cut(s) | 314 |
| Eco81I | CCTNAGG | 1 cut(s) | 135 |
| EcoRI | GAATTC | 1 cut(s) | 307 |
| FaiI | YATR | 8 cut(s) | 35, 219, 247, 249, 305, 346, 354, 398 |
| FaqI | GGGAC | 1 cut(s) | 62 |
| FauNDI | CATATG | 1 cut(s) | 247 |
| FbaI | TGATCA | 1 cut(s) | 43 |
| HinfI | GANTC | 3 cut(s) | 107, 275, 419 |
| HphI | GGTGA | 1 cut(s) | 341 |
| Hpy166II | GTNNAC | 1 cut(s) | 369 |
| Hpy188I | TCNGA | 3 cut(s) | 316, 391, 411 |
| Hpy188III | TCNNGA | 5 cut(s) | 29, 41, 134, 287, 379 |
| Hpy8I | GTNNAC | 1 cut(s) | 369 |
| HpyCH4V | TGCA | 1 cut(s) | 191 |
| HpyF3I | CTNAG | 2 cut(s) | 135, 388 |
| Ksp22I | TGATCA | 1 cut(s) | 43 |
| Kzo9I | GATC | 3 cut(s) | 22, 43, 130 |
| LmnI | GCTCC | 1 cut(s) | 289 |
| LpnPI | CCDG | 4 cut(s) | 72, 147, 272, 386 |
| MaeIII | GTNAC | 1 cut(s) | 29 |
| MalI | GATC | 3 cut(s) | 24, 45, 132 |
| MboI | GATC | 3 cut(s) | 22, 43, 130 |
| MboII | GAAGA | 5 cut(s) | 16, 17, 303, 307, 336 |
| MluCI | AATT | 5 cut(s) | 57, 254, 269, 307, 374 |
| MnlI | CCTC | 4 cut(s) | 130, 196, 223, 244 |
| MseI | TTAA | 1 cut(s) | 54 |
| Mva1269I | GAATGC | 1 cut(s) | 193 |
| NdeI | CATATG | 1 cut(s) | 247 |
| NdeII | GATC | 3 cut(s) | 22, 43, 130 |
| NlaIV | GGNNCC | 1 cut(s) | 78 |
| NmuCI | GTSAC | 1 cut(s) | 29 |
| PctI | GAATGC | 1 cut(s) | 193 |
| PfeI | GAWTC | 3 cut(s) | 107, 275, 419 |
| PspN4I | GGNNCC | 1 cut(s) | 78 |
| PspPI | GGNCC | 1 cut(s) | 76 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 396, 428 |
| PstNI | CAGNNNCTG | 1 cut(s) | 292 |
| SaqAI | TTAA | 1 cut(s) | 54 |
| Sau3AI | GATC | 3 cut(s) | 22, 43, 130 |
| Sau96I | GGNCC | 1 cut(s) | 76 |
| SetI | ASST | 2 cut(s) | 172, 294 |
| SinI | GGWCC | 1 cut(s) | 76 |
| SmlI | CTYRAG | 1 cut(s) | 362 |
| SmoI | CTYRAG | 1 cut(s) | 362 |
| Sse9I | AATT | 5 cut(s) | 57, 254, 269, 307, 374 |
| SspI | AATATT | 1 cut(s) | 146 |
| TaqI | TCGA | 1 cut(s) | 211 |
| TasI | AATT | 5 cut(s) | 57, 254, 269, 307, 374 |
| TfiI | GAWTC | 3 cut(s) | 107, 275, 419 |
| Tru1I | TTAA | 1 cut(s) | 54 |
| Tru9I | TTAA | 1 cut(s) | 54 |
| TseFI | GTSAC | 1 cut(s) | 29 |
| Tsp45I | GTSAC | 1 cut(s) | 29 |
| TspDTI | ATGAA | 3 cut(s) | 17, 282, 320 |
| TspGWI | ACGGA | 1 cut(s) | 414 |
| VpaK11BI | GGWCC | 1 cut(s) | 76 |
| XapI | RAATTY | 4 cut(s) | 57, 254, 269, 307 |