Rorug05G0155400

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000279
Physical Location & Seq
Forward (+)
14513796 .. 14516489
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0155400.1

Sequence Viewer

Length: 1038 bp
ATGAGTAAGTTCCAATCTAATTCAAGCAATTTCTTCAACACTAGCTTCTTTCTTATTCTTCTACCAGTTTTAGTATCTTCGACCTGCACATGTATTCAAAAGCAAGACGAAGATCGAAACCAATCCAAGCAACTGATCATATACAAAATAGTTGCAATCGTTTCAGTTCTGGTTTCTGGTGCCCTAGGAGTCTGTCTTCCATTTCTGGTGAAGATTAACATACCATGTCTTCACCCGGATAATGACTTCTATCTCCTAATCAAGGCCTTTGCAGCAGGAGTGATCTTAGCGACTGGCTTTGTTCATGTGCTTCCTGATGCTCAGGAGAGTTTGACAAGCCCTTGCCTCAGTCAAAAGCCATGGGGAAAGTTTCCGTTCACCGGTTTTGTTGCTATGGTTTCGGCCATTGGGACATTGATGATGGAAGCTTTGGCTACTGGGTACAAGAAGAGATCTGCTCTTAGCAAACCTCAGCCATTAGATGGTGATGAAGAGACACATCATGTTCATGGTTCTGCATTGGTGTTAGAATCATCAAATTCATCGGATAGGATCCGAAATCGTATCATATCTCAGGTTTTGGAGTTGGGAATTATTGTCCATTCAGTGATTATTGGGGTATCCCTTGGTGCTTGTCAAAATCTACACACAATCAAGCCTTTGGTGGCAGCATTGAGTTTCCATCAATTTTTTGAGGGCATAGGACTTGGTGGATGTATCTATCAGGCAAAGTTCAGCCATAAAACAATGGCAGTAATGGTGGGATTCTTTTCCATGACCAGCCCCTGTGGAATAGGTGTGGGCATAGCAATCTCCAACACATACAATGAGAATAGCCCCACTTCACTAGTTGTTGAAGGACTGCTCTTATCAGCATCTGCAGGGATTCTCATTTACATGGCACTTGTTGATCTTCTTGCTGCTGATTTCATAAACAATGCCAAATTGATAAGCAATCCCAAGCTCCAACTTGGGGCTAATTTTACTCTTCTCCTAGGAGCAGGGTTTATGTCACTCTTGGCCAAGTTGGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

345

Amino Acids

36.93

Weight (kDa)

7.61

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 48 - 341 1.5e-73 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 482
AclWI GGATC 2 cut(s) 547, 560
AcoI YGGCCR 2 cut(s) 402, 1020
AcsI RAATTY 1 cut(s) 538
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 4 cut(s) 262, 380, 482, 973
AflIII ACRYGT 1 cut(s) 89
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 4 cut(s) 24, 37, 98, 857
AhlI ACTAGT 1 cut(s) 847
AluBI AGCT 3 cut(s) 45, 428, 964
AluI AGCT 3 cut(s) 45, 428, 964
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 2 cut(s) 547, 560
AlwNI CAGNNNCTG 2 cut(s) 786, 878
AoxI GGCC 3 cut(s) 264, 402, 1020
ApeKI GCWGC 3 cut(s) 272, 668, 920
ApoI RAATTY 1 cut(s) 538
AsiGI ACCGGT 1 cut(s) 380
AspA2I CCTAGG 2 cut(s) 184, 994
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 4 cut(s) 220, 224, 370, 497
AvrII CCTAGG 2 cut(s) 184, 994
BaeGI GKGCMC 1 cut(s) 184
BalI TGGCCA 1 cut(s) 1022
BamHI GGATCC 1 cut(s) 552
BanI GGYRCC 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 188, 221
BbvCI CCTCAGC 1 cut(s) 471
BbvI GCAGC 3 cut(s) 284, 680, 907
BccI CCATC 3 cut(s) 415, 476, 690
BciVI GTATCC 1 cut(s) 631
BclI TGATCA 1 cut(s) 135
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 488
BcuI ACTAGT 1 cut(s) 847
BfaI CTAG 4 cut(s) 42, 185, 848, 995
BfmI CTRYAG 1 cut(s) 879
BfuAI ACCTGC 1 cut(s) 92
BfuI GTATCC 1 cut(s) 631
BglII AGATCT 1 cut(s) 452
BisI GCNGC 3 cut(s) 273, 669, 921
BlnI CCTAGG 2 cut(s) 184, 994
BlsI GCNGC 3 cut(s) 274, 670, 922
Bme1390I CCNGG 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 181, 554
BmrFI CCNGG 1 cut(s) 236
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 2 cut(s) 307, 884
BmuI ACTGGG 1 cut(s) 447
BpiI GAAGAC 2 cut(s) 188, 221
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu10I CCTNAGC 2 cut(s) 321, 471
BpuMI CCSGG 1 cut(s) 236
BsaJI CCNNGG 4 cut(s) 184, 359, 625, 994
BsaWI WCCGGW 1 cut(s) 380
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 380, 482, 973
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 3 cut(s) 65, 298, 442
BseDI CCNNGG 4 cut(s) 184, 359, 625, 994
BseGI GGATG 1 cut(s) 719
BseLI CCNNNNNNNGG 4 cut(s) 262, 380, 482, 973
BseMII CTCAG 4 cut(s) 335, 361, 485, 587
BseNI ACTGG 3 cut(s) 65, 298, 442
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 3 cut(s) 284, 680, 907
BsgI GTGCAG 1 cut(s) 70
BshFI GGCC 3 cut(s) 266, 404, 1022
BshNI GGYRCC 1 cut(s) 179
BshTI ACCGGT 1 cut(s) 380
BsiSI CCGG 2 cut(s) 236, 381
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 4 cut(s) 262, 380, 482, 973
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 3 cut(s) 266, 404, 1022
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 6 cut(s) 112, 135, 282, 452, 552, 910
Bsp19I CCATGG 1 cut(s) 359
BspANI GGCC 3 cut(s) 266, 404, 1022
BspCNI CTCAG 4 cut(s) 334, 360, 484, 586
BspLI GGNNCC 2 cut(s) 181, 554
BspMAI CTGCAG 1 cut(s) 883
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 2 cut(s) 547, 560
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 3 cut(s) 65, 298, 442
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 4 cut(s) 184, 359, 625, 994
BssMI GATC 6 cut(s) 112, 135, 282, 452, 552, 910
BssT1I CCWWGG 4 cut(s) 184, 359, 625, 994
Bst6I CTCTTC 3 cut(s) 443, 486, 993
BstDEI CTNAG 6 cut(s) 286, 321, 347, 461, 471, 573
BstDSI CCRYGG 1 cut(s) 359
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 719
BstKTI GATC 6 cut(s) 115, 138, 285, 455, 555, 913
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 6 cut(s) 112, 135, 282, 452, 552, 910
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 879
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 3 cut(s) 284, 680, 907
BstV2I GAAGAC 2 cut(s) 188, 221
BstX2I RGATCY 2 cut(s) 452, 552
BstYI RGATCY 2 cut(s) 452, 552
BsuI GTATCC 1 cut(s) 631
BsuRI GGCC 3 cut(s) 266, 404, 1022
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 1 cut(s) 719
BtsIMutI CAGTG 1 cut(s) 612
BveI ACCTGC 1 cut(s) 92
CaiI CAGNNNCTG 2 cut(s) 786, 878
Cfr10I RCCGGY 1 cut(s) 380
Csp6I GTAC 1 cut(s) 442
CspAI ACCGGT 1 cut(s) 380
CviAII CATG 8 cut(s) 90, 225, 305, 360, 503, 509, 775, 898
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 6 cut(s) 286, 321, 347, 461, 471, 573
DpnI GATC 6 cut(s) 114, 137, 284, 454, 554, 912
DpnII GATC 6 cut(s) 112, 135, 282, 452, 552, 910
EaeI YGGCCR 2 cut(s) 402, 1020
Eam1104I CTCTTC 3 cut(s) 443, 486, 993
EarI CTCTTC 3 cut(s) 443, 486, 993
Eco130I CCWWGG 4 cut(s) 184, 359, 625, 994
Eco147I AGGCCT 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoT14I CCWWGG 4 cut(s) 184, 359, 625, 994
ErhI CCWWGG 4 cut(s) 184, 359, 625, 994
FaeI CATG 8 cut(s) 93, 228, 308, 363, 506, 512, 778, 901
FaqI GGGAC 1 cut(s) 424
FatI CATG 8 cut(s) 89, 224, 304, 359, 502, 508, 774, 897
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 273, 669, 921
FokI GGATG 1 cut(s) 726
Fsp4HI GCNGC 3 cut(s) 273, 669, 921
FspBI CTAG 4 cut(s) 42, 185, 848, 995
GluI GCNGC 3 cut(s) 273, 669, 921
HaeIII GGCC 3 cut(s) 266, 404, 1022
HapII CCGG 2 cut(s) 236, 381
Hin1II CATG 8 cut(s) 93, 228, 308, 363, 506, 512, 778, 901
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 4 cut(s) 189, 530, 765, 886
HpaII CCGG 2 cut(s) 236, 381
HphI GGTGA 4 cut(s) 220, 224, 370, 497
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 2 cut(s) 547, 557
Hpy188III TCNNGA 2 cut(s) 314, 323
Hpy8I GTNNAC 1 cut(s) 378
HpyAV CCTTC 1 cut(s) 851
HpyCH4V TGCA 5 cut(s) 87, 155, 272, 518, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 6 cut(s) 286, 321, 347, 461, 471, 573
Hsp92II CATG 8 cut(s) 93, 228, 308, 363, 506, 512, 778, 901
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 6 cut(s) 112, 135, 282, 452, 552, 910
LmnI GCTCC 2 cut(s) 969, 998
Lsp1109I GCAGC 3 cut(s) 284, 680, 907
LweI GCATC 2 cut(s) 307, 884
MaeI CTAG 4 cut(s) 42, 185, 848, 995
MaeIII GTNAC 1 cut(s) 1011
MalI GATC 6 cut(s) 114, 137, 284, 454, 554, 912
MboI GATC 6 cut(s) 112, 135, 282, 452, 552, 910
MflI RGATCY 2 cut(s) 452, 552
MhlI GDGCHC 1 cut(s) 184
MlsI TGGCCA 1 cut(s) 1022
MluCI AATT 7 cut(s) 19, 28, 538, 591, 686, 944, 979
MluNI TGGCCA 1 cut(s) 1022
MlyI GAGTC 1 cut(s) 198
MmeI TCCRAC 2 cut(s) 840, 991
MnlI CCTC 3 cut(s) 356, 480, 688
Mox20I TGGCCA 1 cut(s) 1022
MscI TGGCCA 1 cut(s) 1022
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 2 cut(s) 507, 896
Msp20I TGGCCA 1 cut(s) 1022
MspI CCGG 2 cut(s) 236, 381
MspR9I CCNGG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 272
NciI CCSGG 1 cut(s) 236
NcoI CCATGG 1 cut(s) 359
NdeII GATC 6 cut(s) 112, 135, 282, 452, 552, 910
NlaIII CATG 8 cut(s) 93, 228, 308, 363, 506, 512, 778, 901
NlaIV GGNNCC 2 cut(s) 181, 554
NmuCI GTSAC 1 cut(s) 1011
NspI RCATGY 1 cut(s) 93
PceI AGGCCT 1 cut(s) 266
PciI ACATGT 1 cut(s) 89
PfeI GAWTC 3 cut(s) 530, 765, 886
PflMI CCANNNNNTGG 1 cut(s) 482
PinAI ACCGGT 1 cut(s) 380
PkrI GCNGC 3 cut(s) 274, 670, 922
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PscI ACATGT 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 181, 554
PstI CTGCAG 1 cut(s) 883
PstNI CAGNNNCTG 2 cut(s) 786, 878
PsuI RGATCY 2 cut(s) 452, 552
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 2 cut(s) 507, 896
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 3 cut(s) 273, 669, 921
Sau3AI GATC 6 cut(s) 112, 135, 282, 452, 552, 910
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 1 cut(s) 184
SetI ASST 7 cut(s) 47, 86, 430, 472, 579, 799, 966
SfaNI GCATC 2 cut(s) 307, 884
SfcI CTRYAG 1 cut(s) 879
SmiMI CAYNNNNRTG 2 cut(s) 507, 896
SpeI ACTAGT 1 cut(s) 847
Sse9I AATT 7 cut(s) 19, 28, 538, 591, 686, 944, 979
SseBI AGGCCT 1 cut(s) 266
SspMI CTAG 4 cut(s) 42, 185, 848, 995
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 4 cut(s) 184, 359, 625, 994
TaqI TCGA 2 cut(s) 80, 115
TasI AATT 7 cut(s) 19, 28, 538, 591, 686, 944, 979
TfiI GAWTC 3 cut(s) 530, 765, 886
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 612
TseFI GTSAC 1 cut(s) 1011
TseI GCWGC 3 cut(s) 272, 668, 920
Tsp45I GTSAC 1 cut(s) 1011
TspDTI ATGAA 5 cut(s) 293, 497, 504, 531, 919
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 1 cut(s) 612
Van91I CCANNNNNTGG 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 1 cut(s) 538
XceI RCATGY 1 cut(s) 93
XmaJI CCTAGG 2 cut(s) 184, 994
XspI CTAG 4 cut(s) 42, 185, 848, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.