AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1227 |
| AccB1I | GGYRCC | 1 cut(s) | 2937 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 347, 851, 985, 1127 |
| AclI | AACGTT | 1 cut(s) | 1286 |
| AcuI | CTGAAG | 1 cut(s) | 1604 |
| AcvI | CACGTG | 1 cut(s) | 2618 |
| AcyI | GRCGYC | 1 cut(s) | 2938 |
| AdeI | CACNNNGTG | 2 cut(s) | 744, 1775 |
| AfaI | GTAC | 7 cut(s) | 579, 1316, 1855, 1880, 2455, 2610, 3063 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 229, 347, 820, 851, 970, 985, 1127 |
| AflII | CTTAAG | 1 cut(s) | 1409 |
| AflIII | ACRYGT | 5 cut(s) | 308, 580, 1109, 2615, 3058 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 870, 2976 |
| AhlI | ACTAGT | 1 cut(s) | 2077 |
| AjiI | CACGTC | 1 cut(s) | 1970 |
| AjnI | CCWGG | 3 cut(s) | 111, 222, 844 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1811, 1843 |
| AleI | CACNNNNGTG | 1 cut(s) | 3385 |
| Alw21I | GWGCWC | 2 cut(s) | 1256, 1376 |
| Alw26I | GTCTC | 5 cut(s) | 125, 370, 1303, 2754, 3290 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 851 |
| Ama87I | CYCGRG | 1 cut(s) | 1676 |
| AoxI | GGCC | 2 cut(s) | 734, 3366 |
| ApeKI | GCWGC | 3 cut(s) | 711, 773, 1925 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 1959, 1991, 2064, 2096, 2403, 2435, 3119, 3151 |
| AseI | ATTAAT | 2 cut(s) | 522, 1668 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2219 |
| AspLEI | GCGC | 3 cut(s) | 229, 923, 2940 |
| AspS9I | GGNCC | 4 cut(s) | 735, 839, 1738, 2186 |
| AsuHPI | GGTGA | 8 cut(s) | 362, 803, 1256, 1493, 1586, 1657, 2394, 2531 |
| AsuII | TTCGAA | 1 cut(s) | 2070 |
| AvaI | CYCGRG | 1 cut(s) | 1676 |
| AvaII | GGWCC | 3 cut(s) | 839, 1738, 2186 |
| BamHI | GGATCC | 2 cut(s) | 1171, 2243 |
| BanI | GGYRCC | 1 cut(s) | 2937 |
| BanII | GRGCYC | 2 cut(s) | 1256, 1376 |
| BbrPI | CACGTG | 1 cut(s) | 2618 |
| BbsI | GAAGAC | 2 cut(s) | 55, 1967 |
| Bbv12I | GWGCWC | 2 cut(s) | 1256, 1376 |
| BbvI | GCAGC | 3 cut(s) | 698, 760, 1912 |
| BccI | CCATC | 9 cut(s) | 726, 816, 1796, 2140, 2177, 2264, 2498, 2873, 3207 |
| BceAI | ACGGC | 1 cut(s) | 974 |
| BciT130I | CCWGG | 3 cut(s) | 113, 224, 846 |
| BclI | TGATCA | 2 cut(s) | 1084, 1387 |
| BcoDI | GTCTC | 5 cut(s) | 125, 370, 1303, 2754, 3290 |
| BcuI | ACTAGT | 1 cut(s) | 2077 |
| BfaI | CTAG | 4 cut(s) | 729, 1145, 1719, 2078 |
| BfmI | CTRYAG | 1 cut(s) | 774 |
| BfoI | RGCGCY | 1 cut(s) | 2941 |
| BfrI | CTTAAG | 1 cut(s) | 1409 |
| BisI | GCNGC | 3 cut(s) | 712, 774, 1926 |
| BlpI | GCTNAGC | 2 cut(s) | 1255, 1929 |
| BlsI | GCNGC | 3 cut(s) | 713, 775, 1927 |
| BmcAI | AGTACT | 1 cut(s) | 1316 |
| Bme1390I | CCNGG | 3 cut(s) | 113, 224, 846 |
| Bme18I | GGWCC | 3 cut(s) | 839, 1738, 2186 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 870, 2976 |
| BmeT110I | CYCGRG | 1 cut(s) | 1676 |
| BmgBI | CACGTC | 1 cut(s) | 1970 |
| BmgT120I | GGNCC | 4 cut(s) | 735, 839, 1738, 2186 |
| BmiI | GGNNCC | 6 cut(s) | 840, 962, 1173, 1730, 2245, 2939 |
| BmrFI | CCNGG | 3 cut(s) | 113, 224, 846 |
| BmsI | GCATC | 7 cut(s) | 488, 1457, 1868, 2137, 2689, 3332, 3353 |
| BpiI | GAAGAC | 2 cut(s) | 55, 1967 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 122, 154 |
| BpmI | CTGGAG | 2 cut(s) | 828, 3278 |
| Bpu10I | CCTNAGC | 1 cut(s) | 717 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1255, 1929 |
| Bpu14I | TTCGAA | 1 cut(s) | 2070 |
| BpuEI | CTTGAG | 6 cut(s) | 193, 203, 1091, 1187, 2246, 3206 |
| BsaAI | YACGTR | 3 cut(s) | 325, 581, 2618 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2537 |
| BsaHI | GRCGYC | 1 cut(s) | 2938 |
| BsaI | GGTCTC | 1 cut(s) | 370 |
| BsaJI | CCNNGG | 6 cut(s) | 111, 222, 267, 845, 2512, 3383 |
| BsaWI | WCCGGW | 1 cut(s) | 3371 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 907, 937, 1298, 1328, 1418, 1448 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 229, 347, 820, 851, 970, 985, 1127 |
| Bse1I | ACTGG | 5 cut(s) | 341, 856, 1905, 2116, 2479 |
| Bse3DI | GCAATG | 2 cut(s) | 357, 1713 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2537 |
| BseBI | CCWGG | 3 cut(s) | 113, 224, 846 |
| BseDI | CCNNGG | 6 cut(s) | 111, 222, 267, 845, 2512, 3383 |
| BseGI | GGATG | 4 cut(s) | 1041, 2128, 2533, 3344 |
| BseJI | GATNNNNATC | 1 cut(s) | 2537 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 229, 347, 820, 851, 970, 985, 1127 |
| BseMI | GCAATG | 2 cut(s) | 357, 1713 |
| BseMII | CTCAG | 9 cut(s) | 120, 615, 708, 956, 1269, 1943, 2031, 2765, 3284 |
| BseNI | ACTGG | 5 cut(s) | 341, 856, 1905, 2116, 2479 |
| BseRI | GAGGAG | 1 cut(s) | 1556 |
| BseXI | GCAGC | 3 cut(s) | 698, 760, 1912 |
| BsgI | GTGCAG | 2 cut(s) | 333, 925 |
| Bsh1285I | CGRYCG | 1 cut(s) | 144 |
| BshFI | GGCC | 2 cut(s) | 736, 3368 |
| BshNI | GGYRCC | 1 cut(s) | 2937 |
| BsiEI | CGRYCG | 1 cut(s) | 144 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1256, 1376 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1676 |
| BsiSI | CCGG | 1 cut(s) | 3372 |
| BslFI | GGGAC | 5 cut(s) | 205, 862, 2103, 3206, 3311 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 229, 347, 820, 851, 970, 985, 1127 |
| BsmAI | GTCTC | 5 cut(s) | 125, 370, 1303, 2754, 3290 |
| BsmBI | CGTCTC | 1 cut(s) | 125 |
| BsmFI | GGGAC | 5 cut(s) | 205, 862, 2103, 3206, 3311 |
| BsmI | GAATGC | 2 cut(s) | 2050, 2130 |
| BsnI | GGCC | 2 cut(s) | 736, 3368 |
| Bso31I | GGTCTC | 1 cut(s) | 370 |
| BsoBI | CYCGRG | 1 cut(s) | 1676 |
| Bsp119I | TTCGAA | 1 cut(s) | 2070 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1256, 1376 |
| Bsp1407I | TGTACA | 2 cut(s) | 1878, 3061 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1255, 1929 |
| BspANI | GGCC | 2 cut(s) | 736, 3368 |
| BspCNI | CTCAG | 9 cut(s) | 121, 614, 709, 957, 1268, 1942, 2032, 2764, 3285 |
| BspHI | TCATGA | 2 cut(s) | 558, 2947 |
| BspLI | GGNNCC | 6 cut(s) | 840, 962, 1173, 1730, 2245, 2939 |
| BspMAI | CTGCAG | 1 cut(s) | 778 |
| BspT104I | TTCGAA | 1 cut(s) | 2070 |
| BspT107I | GGYRCC | 1 cut(s) | 2937 |
| BspTI | CTTAAG | 1 cut(s) | 1409 |
| BspTNI | GGTCTC | 1 cut(s) | 370 |
| BsrDI | GCAATG | 2 cut(s) | 357, 1713 |
| BsrGI | TGTACA | 2 cut(s) | 1878, 3061 |
| BsrI | ACTGG | 5 cut(s) | 341, 856, 1905, 2116, 2479 |
| BssECI | CCNNGG | 6 cut(s) | 111, 222, 267, 845, 2512, 3383 |
| BssNI | GRCGYC | 1 cut(s) | 2938 |
| BssT1I | CCWWGG | 3 cut(s) | 267, 2512, 3383 |
| Bst2UI | CCWGG | 3 cut(s) | 113, 224, 846 |
| Bst6I | CTCTTC | 2 cut(s) | 2427, 2517 |
| BstACI | GRCGYC | 1 cut(s) | 2938 |
| BstAFI | CTTAAG | 1 cut(s) | 1409 |
| BstAUI | TGTACA | 2 cut(s) | 1878, 3061 |
| BstBAI | YACGTR | 3 cut(s) | 325, 581, 2618 |
| BstBI | TTCGAA | 1 cut(s) | 2070 |
| BstC8I | GCNNGC | 3 cut(s) | 231, 1840, 3306 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 227 |
| BstF5I | GGATG | 4 cut(s) | 1041, 2128, 2533, 3344 |
| BstH2I | RGCGCY | 1 cut(s) | 2941 |
| BstHHI | GCGC | 3 cut(s) | 229, 923, 2940 |
| BstMAI | GTCTC | 5 cut(s) | 125, 370, 1303, 2754, 3290 |
| BstMCI | CGRYCG | 1 cut(s) | 144 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 2045 |
| BstNI | CCWGG | 3 cut(s) | 113, 224, 846 |
| BstNSI | RCATGY | 5 cut(s) | 312, 921, 1113, 1985, 3062 |
| BstSCI | CCNGG | 3 cut(s) | 111, 222, 844 |
| BstSFI | CTRYAG | 1 cut(s) | 774 |
| BstSNI | TACGTA | 1 cut(s) | 325 |
| BstV1I | GCAGC | 3 cut(s) | 698, 760, 1912 |
| BstV2I | GAAGAC | 2 cut(s) | 55, 1967 |
| BstX2I | RGATCY | 4 cut(s) | 404, 1171, 2243, 2770 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3213 |
| BstYI | RGATCY | 4 cut(s) | 404, 1171, 2243, 2770 |
| BsuRI | GGCC | 2 cut(s) | 736, 3368 |
| BtgZI | GCGATG | 1 cut(s) | 2851 |
| BtrI | CACGTC | 1 cut(s) | 1970 |
| BtsCI | GGATG | 4 cut(s) | 1041, 2128, 2533, 3344 |
| BtsIMutI | CAGTG | 8 cut(s) | 911, 1319, 1366, 1898, 2544, 2626, 3156, 3247 |
| Cac8I | GCNNGC | 3 cut(s) | 231, 1840, 3306 |
| CaiI | CAGNNNCTG | 1 cut(s) | 851 |
| CciI | TCATGA | 2 cut(s) | 558, 2947 |
| CfoI | GCGC | 3 cut(s) | 229, 923, 2940 |
| Cfr13I | GGNCC | 4 cut(s) | 735, 839, 1738, 2186 |
| CseI | GACGC | 1 cut(s) | 2304 |
| Csp6I | GTAC | 7 cut(s) | 578, 1315, 1854, 1879, 2454, 2609, 3062 |
| CspCI | CAANNNNNGTGG | 5 cut(s) | 30, 916, 951, 3337, 3372 |
| CviQI | GTAC | 7 cut(s) | 578, 1315, 1854, 1879, 2454, 2609, 3062 |
| DinI | GGCGCC | 1 cut(s) | 2939 |
| DraIII | CACNNNGTG | 2 cut(s) | 744, 1775 |
| DriI | GACNNNNNGTC | 2 cut(s) | 870, 2976 |
| Eam1104I | CTCTTC | 2 cut(s) | 2427, 2517 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 870, 2976 |
| EarI | CTCTTC | 2 cut(s) | 2427, 2517 |
| Ecl136II | GAGCTC | 2 cut(s) | 1254, 1374 |
| Eco105I | TACGTA | 1 cut(s) | 325 |
| Eco130I | CCWWGG | 3 cut(s) | 267, 2512, 3383 |
| Eco24I | GRGCYC | 2 cut(s) | 1256, 1376 |
| Eco31I | GGTCTC | 1 cut(s) | 370 |
| Eco32I | GATATC | 2 cut(s) | 355, 2178 |
| Eco47I | GGWCC | 3 cut(s) | 839, 1738, 2186 |
| Eco53kI | GAGCTC | 2 cut(s) | 1254, 1374 |
| Eco57I | CTGAAG | 1 cut(s) | 1604 |
| Eco72I | CACGTG | 1 cut(s) | 2618 |
| Eco88I | CYCGRG | 1 cut(s) | 1676 |
| EcoICRI | GAGCTC | 2 cut(s) | 1254, 1374 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 227 |
| EcoO109I | RGGNCCY | 1 cut(s) | 839 |
| EcoRI | GAATTC | 3 cut(s) | 676, 2360, 3049 |
| EcoRII | CCWGG | 3 cut(s) | 111, 222, 844 |
| EcoRV | GATATC | 2 cut(s) | 355, 2178 |
| EcoT14I | CCWWGG | 3 cut(s) | 267, 2512, 3383 |
| EcoT22I | ATGCAT | 2 cut(s) | 2130, 3346 |
| EcoT38I | GRGCYC | 2 cut(s) | 1256, 1376 |
| EgeI | GGCGCC | 1 cut(s) | 2939 |
| EheI | GGCGCC | 1 cut(s) | 2939 |
| ErhI | CCWWGG | 3 cut(s) | 267, 2512, 3383 |
| Esp3I | CGTCTC | 1 cut(s) | 125 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2825, 2857 |
| FaqI | GGGAC | 5 cut(s) | 205, 862, 2103, 3206, 3311 |
| FbaI | TGATCA | 2 cut(s) | 1084, 1387 |
| Fnu4HI | GCNGC | 3 cut(s) | 712, 774, 1926 |
| FokI | GGATG | 4 cut(s) | 1048, 2115, 2540, 3331 |
| FriOI | GRGCYC | 2 cut(s) | 1256, 1376 |
| Fsp4HI | GCNGC | 3 cut(s) | 712, 774, 1926 |
| FspBI | CTAG | 4 cut(s) | 729, 1145, 1719, 2078 |
| GlaI | GCGC | 3 cut(s) | 228, 922, 2939 |
| GluI | GCNGC | 3 cut(s) | 712, 774, 1926 |
| GsuI | CTGGAG | 2 cut(s) | 828, 3278 |
| HaeII | RGCGCY | 1 cut(s) | 2941 |
| HaeIII | GGCC | 2 cut(s) | 736, 3368 |
| HapII | CCGG | 1 cut(s) | 3372 |
| HgaI | GACGC | 1 cut(s) | 2304 |
| HhaI | GCGC | 3 cut(s) | 229, 923, 2940 |
| Hin1I | GRCGYC | 1 cut(s) | 2938 |
| Hin6I | GCGC | 3 cut(s) | 227, 921, 2938 |
| HinP1I | GCGC | 3 cut(s) | 227, 921, 2938 |
| HincII | GTYRAC | 1 cut(s) | 976 |
| HindII | GTYRAC | 1 cut(s) | 976 |
| HindIII | AAGCTT | 3 cut(s) | 464, 2062, 2921 |
| HpaI | GTTAAC | 1 cut(s) | 976 |
| HpaII | CCGG | 1 cut(s) | 3372 |
| HphI | GGTGA | 8 cut(s) | 362, 803, 1256, 1493, 1586, 1657, 2394, 2531 |
| Hpy166II | GTNNAC | 8 cut(s) | 553, 976, 1107, 1881, 2294, 2839, 3034, 3154 |
| Hpy8I | GTNNAC | 8 cut(s) | 553, 976, 1107, 1881, 2294, 2839, 3034, 3154 |
| Hpy99I | CGWCG | 3 cut(s) | 675, 1971, 2898 |
| HpyCH4IV | ACGT | 7 cut(s) | 134, 324, 580, 1286, 1535, 1969, 2617 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 2045 |
| HpySE526I | ACGT | 7 cut(s) | 134, 324, 580, 1286, 1535, 1969, 2617 |
| Hsp92I | GRCGYC | 1 cut(s) | 2938 |
| HspAI | GCGC | 3 cut(s) | 227, 921, 2938 |
| KasI | GGCGCC | 1 cut(s) | 2937 |
| Ksp22I | TGATCA | 2 cut(s) | 1084, 1387 |
| KspAI | GTTAAC | 1 cut(s) | 976 |
| LmnI | GCTCC | 7 cut(s) | 45, 329, 928, 966, 1251, 1371, 2205 |
| Lsp1109I | GCAGC | 3 cut(s) | 698, 760, 1912 |
| LweI | GCATC | 7 cut(s) | 488, 1457, 1868, 2137, 2689, 3332, 3353 |
| MaeI | CTAG | 4 cut(s) | 729, 1145, 1719, 2078 |
| MaeII | ACGT | 7 cut(s) | 134, 324, 580, 1286, 1535, 1969, 2617 |
| MaeIII | GTNAC | 8 cut(s) | 115, 145, 152, 876, 949, 2669, 3143, 3236 |
| MfeI | CAATTG | 5 cut(s) | 867, 1733, 2427, 2571, 2713 |
| MflI | RGATCY | 4 cut(s) | 404, 1171, 2243, 2770 |
| MhlI | GDGCHC | 2 cut(s) | 1256, 1376 |
| Mly113I | GGCGCC | 1 cut(s) | 2938 |
| MlyI | GAGTC | 3 cut(s) | 512, 1157, 1688 |
| MmeI | TCCRAC | 4 cut(s) | 653, 1112, 1814, 3372 |
| Mph1103I | ATGCAT | 2 cut(s) | 2130, 3346 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2219 |
| MslI | CAYNNNNRTG | 4 cut(s) | 563, 916, 3099, 3385 |
| MspA1I | CMGCKG | 1 cut(s) | 3308 |
| MspCI | CTTAAG | 1 cut(s) | 1409 |
| MspI | CCGG | 1 cut(s) | 3372 |
| MspR9I | CCNGG | 3 cut(s) | 113, 224, 846 |
| MunI | CAATTG | 5 cut(s) | 867, 1733, 2427, 2571, 2713 |
| Mva1269I | GAATGC | 2 cut(s) | 2050, 2130 |
| MvaI | CCWGG | 3 cut(s) | 113, 224, 846 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 2045 |
| NarI | GGCGCC | 1 cut(s) | 2938 |
| NlaIV | GGNNCC | 6 cut(s) | 840, 962, 1173, 1730, 2245, 2939 |
| NmuCI | GTSAC | 2 cut(s) | 876, 949 |
| NsiI | ATGCAT | 2 cut(s) | 2130, 3346 |
| NspI | RCATGY | 5 cut(s) | 312, 921, 1113, 1985, 3062 |
| NspV | TTCGAA | 1 cut(s) | 2070 |
| OliI | CACNNNNGTG | 1 cut(s) | 3385 |
| PaeR7I | CTCGAG | 1 cut(s) | 1676 |
| PagI | TCATGA | 2 cut(s) | 558, 2947 |
| PciI | ACATGT | 3 cut(s) | 308, 1109, 3058 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 146, 1975 |
| PctI | GAATGC | 2 cut(s) | 2050, 2130 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2219 |
| PflFI | GACNNNGTC | 2 cut(s) | 1971, 2659 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 347, 851, 985, 1127 |
| PkrI | GCNGC | 3 cut(s) | 713, 775, 1927 |
| PleI | GAGTC | 3 cut(s) | 511, 1156, 1687 |
| PluTI | GGCGCC | 1 cut(s) | 2941 |
| PmaCI | CACGTG | 1 cut(s) | 2618 |
| PmlI | CACGTG | 1 cut(s) | 2618 |
| PpsI | GAGTC | 3 cut(s) | 511, 1156, 1687 |
| Ppu21I | YACGTR | 3 cut(s) | 325, 581, 2618 |
| PpuMI | RGGWCCY | 1 cut(s) | 839 |
| PscI | ACATGT | 3 cut(s) | 308, 1109, 3058 |
| PshBI | ATTAAT | 2 cut(s) | 522, 1668 |
| PsiI | TTATAA | 1 cut(s) | 1227 |
| Psp124BI | GAGCTC | 2 cut(s) | 1256, 1376 |
| Psp1406I | AACGTT | 1 cut(s) | 1286 |
| Psp5II | RGGWCCY | 1 cut(s) | 839 |
| Psp6I | CCWGG | 3 cut(s) | 111, 222, 844 |
| PspCI | CACGTG | 1 cut(s) | 2618 |
| PspGI | CCWGG | 3 cut(s) | 111, 222, 844 |
| PspN4I | GGNNCC | 6 cut(s) | 840, 962, 1173, 1730, 2245, 2939 |
| PspPI | GGNCC | 4 cut(s) | 735, 839, 1738, 2186 |
| PspPPI | RGGWCCY | 1 cut(s) | 839 |
| PspXI | VCTCGAGB | 1 cut(s) | 1676 |
| PstI | CTGCAG | 1 cut(s) | 778 |
| PstNI | CAGNNNCTG | 1 cut(s) | 851 |
| PsuI | RGATCY | 4 cut(s) | 404, 1171, 2243, 2770 |
| PsyI | GACNNNGTC | 2 cut(s) | 1971, 2659 |
| PvuII | CAGCTG | 1 cut(s) | 3308 |
| RsaI | GTAC | 7 cut(s) | 579, 1316, 1855, 1880, 2455, 2610, 3063 |
| RsaNI | GTAC | 7 cut(s) | 578, 1315, 1854, 1879, 2454, 2609, 3062 |
| RseI | CAYNNNNRTG | 4 cut(s) | 563, 916, 3099, 3385 |
| SacI | GAGCTC | 2 cut(s) | 1256, 1376 |
| SatI | GCNGC | 3 cut(s) | 712, 774, 1926 |
| Sau96I | GGNCC | 4 cut(s) | 735, 839, 1738, 2186 |
| ScaI | AGTACT | 1 cut(s) | 1316 |
| SchI | GAGTC | 3 cut(s) | 512, 1157, 1688 |
| ScrFI | CCNGG | 3 cut(s) | 113, 224, 846 |
| SduI | GDGCHC | 2 cut(s) | 1256, 1376 |
| SfaNI | GCATC | 7 cut(s) | 488, 1457, 1868, 2137, 2689, 3332, 3353 |
| SfcI | CTRYAG | 1 cut(s) | 774 |
| SfoI | GGCGCC | 1 cut(s) | 2939 |
| Sfr274I | CTCGAG | 1 cut(s) | 1676 |
| SfuI | TTCGAA | 1 cut(s) | 2070 |
| SinI | GGWCC | 3 cut(s) | 839, 1738, 2186 |
| SlaI | CTCGAG | 1 cut(s) | 1676 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 563, 916, 3099, 3385 |
| SmlI | CTYRAG | 8 cut(s) | 182, 208, 1070, 1166, 1409, 1676, 2225, 3185 |
| SmoI | CTYRAG | 8 cut(s) | 182, 208, 1070, 1166, 1409, 1676, 2225, 3185 |
| SnaBI | TACGTA | 1 cut(s) | 325 |
| SpeI | ACTAGT | 1 cut(s) | 2077 |
| SspDI | GGCGCC | 1 cut(s) | 2937 |
| SspI | AATATT | 3 cut(s) | 637, 934, 1848 |
| SspMI | CTAG | 4 cut(s) | 729, 1145, 1719, 2078 |
| SstI | GAGCTC | 2 cut(s) | 1256, 1376 |
| StyD4I | CCNGG | 3 cut(s) | 111, 222, 844 |
| StyI | CCWWGG | 3 cut(s) | 267, 2512, 3383 |
| TaiI | ACGT | 7 cut(s) | 137, 327, 583, 1289, 1538, 1972, 2620 |
| TaqI | TCGA | 6 cut(s) | 140, 1677, 1978, 2070, 2122, 2368 |
| TaqII | GACCGA | 1 cut(s) | 383 |
| TatI | WGTACW | 5 cut(s) | 1314, 1853, 1878, 2608, 3061 |
| TscAI | CASTG | 8 cut(s) | 918, 1326, 1366, 1905, 2551, 2633, 3156, 3247 |
| TseFI | GTSAC | 2 cut(s) | 876, 949 |
| TseI | GCWGC | 3 cut(s) | 711, 773, 1925 |
| Tsp45I | GTSAC | 2 cut(s) | 876, 949 |
| TspGWI | ACGGA | 3 cut(s) | 465, 1898, 2471 |
| TspRI | CASTG | 8 cut(s) | 918, 1326, 1366, 1905, 2551, 2633, 3156, 3247 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1971, 2659 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 347, 851, 985, 1127 |
| Vha464I | CTTAAG | 1 cut(s) | 1409 |
| VpaK11BI | GGWCC | 3 cut(s) | 839, 1738, 2186 |
| VspI | ATTAAT | 2 cut(s) | 522, 1668 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 227 |
| XceI | RCATGY | 5 cut(s) | 312, 921, 1113, 1985, 3062 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1128 |
| XhoI | CTCGAG | 1 cut(s) | 1676 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2219 |
| XspI | CTAG | 4 cut(s) | 729, 1145, 1719, 2078 |
| ZrmI | AGTACT | 1 cut(s) | 1316 |
| Zsp2I | ATGCAT | 2 cut(s) | 2130, 3346 |