Prupe.3G013100_v2.0.a1

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000279
Physical Location & Seq
Forward (+)
929427 .. 935235
5809 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G013100.1

Sequence Viewer

Length: 3297 bp
ATGGAGAAGACTAGCACGACCACCAAAAAGAAAGAAATTACAGATAGAAGTAGCTTGATCGATCTGGTATTCTCTTGGTCTCTCAGGGATGTTCTCAACAACCATCTTTACAAAAACCAGGTTCCCAAGATTCCCGATACATTCTCGACTGTGACGAGCTACAAGAAATCATTCATTCCTTCACTCATTGAGGAAACTCATGCTGATTTACTCTCAAACATGATGACTCTGTCGCACGCACCTACTTGTGAGATACTGACACTTGAATATTCTAAACATCATAAACCTCCCAAAGCTTTGTTTTATGATATAAGATATAAGAAAGATACAGAAGTTGATAAGAATCACAAAGGGCCAATGTATGAGCCACAGGTTGGAGATCTCATTGCCTTGACTAATGTCAAACCAAAATGCATTGATGATCTGAATAGGCCCCAAAGGTTCTATCTTATTGCTTATGTTGATGGAGTGACTAATCTTGAGAACTTTCCTGATGATTTTGAATTCAAAATACTCTCGTCGAAGCCTATAGGTTTCGGAGAGCAAGACACACAACAGAGCAAGAGAGAAACACTTTTTGCTGTCTATCTGATGAACATGACAACAAACATTCGTGTATGGAATGCCTTGAACTCAGAAGGGGAAAACAAAAATGTCATTGAGAAAGTTCTGCAACCCAATTCAGATGATGGGAGTTCTTGCACAGTTTGTTTTCCCAAAGAAAAATGCTCTCCTGACCTTTCTACGATATGGCCCACAATTAGCTCTCATAGTCTAAATGAGTCCCAAGAAGCTGCAATTTTAAACTGTATTAGTTTGAGCAAATGCCAACACCAGAATGCTGTCAAATTAATATGGGGTCCTCCTGGTACTGGGAAAACAAAGACCGTCAGTCTATCACTCTTTGCTCTGTTTAAGTTGAAGTGCAGAACACTAACATGCGCTCCCACCAATATTGCGGTTTTAGAGGTGGCAGCACGGCTCCGGAGATTGGTTAATCATTCACTTGAGTATGGTAAGTATGGACTTGGAGATATAATTCTCTTTGGGAACAAGAAGCGAATGAAGGTCGATGGTAATGCTGAACTTCTTGATGTATTTCTTGATCATCGTGCTAAAACTCTGTACGAGTGTTTGGTCCCTTTATCCGGATGGAAGCATTTGTTAGAATCAATGATATGTCTACTCGAGGATCCAGATAAACAATACTCTTTATATTTGGAAAAGGAAGTGGAAAAGCATAAAGAGAATGCTCAAGAAAATAAGAAGGATGCTAATGGAAATGCAGAAAGTGTAAGTGGGGATGATCCTTTGACATTTGAGGAGTTCATGAGGAGAGAATTTGATTCAGTTGGTGATGCTATGAAGTTTTGTATGGTAAACTTTTACACTCACTTACCAACTTGTTGCATTTCACTTAAGGTGGTGAAGGATATGGTTGAAGCTTTGAGTTTACTTAAGTCTTTTAAATCTTCTTTGCATAGCATTGGTTTGAAGTTACTCCTAAACGATTTCAAAGGTCCAGGAAGCATTGGTGGTTGTGGTTGGTTTACACAGTTGAGAAAAAAGTGTGCTTGTAAACTGAAGTTGCTTCCTCAGGAATTTTCTGGTCTGAATTCCATTTCCATTAATGAATTTTTAATAAAACAATTCTGCCTGCAAAATGCTTGCTTAATATTTTGTACTGCATCAACTTCTGCCAAATTGGACGGTACAGCAGCAGTGAGACCACTCGAATTGTTAGTCATTGATGAAGCTGCTCAGCTTAAAGAATGTGAATCAGCAATTCCCTTACAACTGTCTGGTATCCGCCATGCTATTCTCATAGGAGATGAGAGGCAACTCCCTGCTATGGTTAAAAGCAAGGTTTCCGCAAAGGCTGAATTTGGAAGAAGTTTGTTCGAAAGGCTGGCAGGGTTGGGACACGCGAAGCATCTTCTAAATATCCAATATAGGATGCATCCATCCATCAGCTTATTTCCAAATAGGGAGTTTTACGACAATCAGATATTAGATGGTCCAAATGTCAATGAAAGAAGCTATGAGAGGTGCTTCCTTGAGGGAAAAATGTACCGATCCTACTCCTTTATAAATGTAGCCAATGGAAAAGATGAATTTGATCATGGTCATAGTAGAAAAAATATGGTGGAGGTTGCTGTGGTCTCTGAGATAGTTGCAAGCCTTTACAAAGATTTCACTGGCAAAAGGAAGAAGGTCAGTGTTGGGGTCATATCACCATACAAGGCTCAAGTTCATGCGATTCAAGAGAGAGTCAAAAATTACAGTAAGGATTCTGATGCAGGCTTCTCTGTAAGTGTGCGATCTGTTGATGGTTTCCAAGGTGGTGAAGAGGATGTAATAATTATCTCCACTGTAAGATGTAATGGGAATGGATCAATTGGTTTCTTGTCTAACCATCAAAGAGCAAATGTGGCGCTCACACGTGCAAGGTATTGTCTTTGGATTTTGGGGAATGGATCGACTTTGGTTAACAGTGACTCTATTTGGAAAAAGCTAGTCCTTGATGCCGAGAGACGTGGATGCTTTCATAATGCTGATGAGGACAATAACTTGGCTCAGGCTATTGCAGCTGCCCTCCTGGAGCTTGGCCAACTTCATTCTTTACTTAATACTGACTCTTTTCTGTTCAAAAATGCAAGATGGAAGGTTTGCTTCACTAGTGAATTTCAGAAGTCCTTAGCAATGATTAAAGACACTGTTATATGTCGGGAAGTGTTTAATCTATTAACCAAGCTTTCAAGTGGATGGCGTCGAGCTCAGAAGGATAAAGGAATTATAGTGCATGATGGGACTTGTGCTCAACTGTTAGAGAAGTATAAAGTCAATAGGCTGCTGAATCTCATTTGGACTGTAGACATTCTCCAGCAGAATTCGGAATATGTCCAGGTTATGAAGGTTTGGGATATTGTGACACGTTCTGATCTACCTAAACTAGCAAAGCGTCTTGATATCATTATTGGGAGTTATACAGTGGATAAGATGAATCGCTGCAAGCATAAATGTATAGAAAGGGGCACTTCTGTTCCCATGAGATGGCCAGTGGATCTGAGTAGTTGCCTTGAAGCTGATCCTGTGGAGTTCCTTTCAAAACCATTATCTTCACTCGGTCTAACTGATAAACCAGAAACACCATCTTCAAAATCTGGGGAGACCACCAAAGCAGTGAAACCTCTCACACAATGCCTTTCGACTCCCCAAAGTCGTTCCAAAAGCCGTGCTAATCAAAGGAGATCATCCAAACTACAGGTTTGGAGACCATGTATTCCTTATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

1099

Amino Acids

123.65

Weight (kDa)

8.77

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2090
AccB7I CCANNNNNTGG 2 cut(s) 374, 3054
AccI GTMKAC 2 cut(s) 1183, 2874
AccII CGCG 1 cut(s) 1928
AccIII TCCGGA 2 cut(s) 984, 1148
AciI CCGC 3 cut(s) 959, 1810, 1872
AclWI GGATC 8 cut(s) 1187, 1200, 1301, 2070, 2401, 2485, 3072, 3083
AcoI YGGCCR 2 cut(s) 2608, 3056
AcsI RAATTY 9 cut(s) 503, 1340, 1601, 1615, 1634, 1883, 2114, 2684, 2890
AcuI CTGAAG 1 cut(s) 1604
AcvI CACGTG 1 cut(s) 2444
AcyI GRCGYC 1 cut(s) 2770
AfaI GTAC 5 cut(s) 871, 1127, 1684, 1714, 2072
AfiI CCNNNNNNNGG 6 cut(s) 374, 872, 991, 1148, 1852, 3054
AflII CTTAAG 2 cut(s) 1418, 1457
AflIII ACRYGT 2 cut(s) 2441, 2933
AhdI GACNNNNNGTC 1 cut(s) 891
AhlI ACTAGT 1 cut(s) 2678
AjiI CACGTC 1 cut(s) 2537
AjnI CCWGG 5 cut(s) 117, 865, 1522, 2598, 2904
Alw21I GWGCWC 2 cut(s) 2779, 2821
Alw26I GTCTC 6 cut(s) 84, 1720, 2167, 2527, 3164, 3268
AlwI GGATC 8 cut(s) 1187, 1200, 1301, 2070, 2401, 2485, 3072, 3083
Ama87I CYCGRG 1 cut(s) 1187
Aor13HI TCCGGA 2 cut(s) 984, 1148
AoxI GGCC 5 cut(s) 353, 431, 752, 2608, 3056
ApeKI GCWGC 8 cut(s) 794, 974, 1718, 1757, 2588, 2591, 2851, 3009
ApoI RAATTY 9 cut(s) 503, 1340, 1601, 1615, 1634, 1883, 2114, 2684, 2890
ArsI GACNNNNNNTTYG 2 cut(s) 1728, 1760
AseI ATTAAT 2 cut(s) 851, 1629
Asp700I GAANNNNTTC 1 cut(s) 170
AspLEI GCGC 2 cut(s) 944, 2437
AspS9I GGNCC 7 cut(s) 353, 432, 753, 860, 1138, 1520, 2018
AsuHPI GGTGA 4 cut(s) 1367, 1438, 2226, 2357
AsuII TTCGAA 1 cut(s) 1902
AvaI CYCGRG 1 cut(s) 1187
AvaII GGWCC 4 cut(s) 860, 1138, 1520, 2018
AxyI CCTNAGG 1 cut(s) 1596
BaeGI GKGCMC 1 cut(s) 3038
BaeI ACNNNNGTAYC 2 cut(s) 318, 351
BalI TGGCCA 2 cut(s) 2610, 3058
BamHI GGATCC 1 cut(s) 1192
BanII GRGCYC 1 cut(s) 2779
BbrPI CACGTG 1 cut(s) 2444
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 2779, 2821
BbvI GCAGC 8 cut(s) 781, 986, 1730, 1744, 2578, 2600, 2838, 2996
BceAI ACGGC 2 cut(s) 995, 3219
BcgI CGANNNNNNTGC 2 cut(s) 1061, 1095
BciT130I CCWGG 5 cut(s) 119, 867, 1524, 2600, 2906
BciVI GTATCC 1 cut(s) 1817
BclI TGATCA 2 cut(s) 1105, 2119
BcoDI GTCTC 6 cut(s) 84, 1720, 2167, 2527, 3164, 3268
BcuI ACTAGT 1 cut(s) 2678
BfaI CTAG 4 cut(s) 12, 2516, 2679, 2954
BfmI CTRYAG 3 cut(s) 528, 2871, 3263
BfoI RGCGCY 1 cut(s) 2438
BfrI CTTAAG 2 cut(s) 1418, 1457
BfuI GTATCC 1 cut(s) 1817
BglII AGATCT 1 cut(s) 379
BisI GCNGC 8 cut(s) 795, 975, 1719, 1758, 2589, 2592, 2852, 3010
BlpI GCTNAGC 1 cut(s) 1761
BlsI GCNGC 8 cut(s) 796, 976, 1720, 1759, 2590, 2593, 2853, 3011
Bme1390I CCNGG 5 cut(s) 119, 867, 1524, 2600, 2906
Bme18I GGWCC 4 cut(s) 860, 1138, 1520, 2018
BmeRI GACNNNNNGTC 1 cut(s) 891
BmeT110I CYCGRG 1 cut(s) 1187
BmgBI CACGTC 1 cut(s) 2537
BmgT120I GGNCC 7 cut(s) 353, 432, 753, 860, 1138, 1520, 2018
BmiI GGNNCC 6 cut(s) 123, 434, 861, 983, 1140, 1194
BmrFI CCNGG 5 cut(s) 119, 867, 1524, 2600, 2906
BmrI ACTGGG 1 cut(s) 882
BmsI GCATC 9 cut(s) 1261, 1348, 1697, 1942, 1947, 1969, 2287, 2515, 2531
BmuI ACTGGG 1 cut(s) 882
BoxI GACNNNNGTC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 2 cut(s) 2621, 2867
Bpu10I CCTNAGC 2 cut(s) 2577, 2698
Bpu1102I GCTNAGC 1 cut(s) 1761
Bpu14I TTCGAA 1 cut(s) 1902
BpuEI CTTGAG 5 cut(s) 500, 1028, 1239, 2078, 2232
Bsa29I ATCGAT 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 2444
BsaBI GATNNNNATC 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 2770
BsaI GGTCTC 5 cut(s) 84, 1720, 2167, 3164, 3268
BsaJI CCNNGG 1 cut(s) 2338
BsaWI WCCGGW 2 cut(s) 984, 1148
BsaXI ACNNNNNCTCC 4 cut(s) 928, 958, 3265, 3295
Bsc4I CCNNNNNNNGG 6 cut(s) 374, 872, 991, 1148, 1852, 3054
Bse1I ACTGG 3 cut(s) 877, 2203, 3059
Bse21I CCTNAGG 1 cut(s) 1596
Bse3DI GCAATG 2 cut(s) 384, 2709
Bse8I GATNNNNATC 1 cut(s) 342
BseAI TCCGGA 2 cut(s) 984, 1148
BseBI CCWGG 5 cut(s) 119, 867, 1524, 2600, 2906
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 2338
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 6 cut(s) 374, 872, 991, 1148, 1852, 3054
BseMI GCAATG 2 cut(s) 384, 2709
BseMII CTCAG 8 cut(s) 97, 648, 1610, 1775, 2157, 2591, 2792, 3059
BseNI ACTGG 3 cut(s) 877, 2203, 3059
BseRI GAGGAG 2 cut(s) 1337, 1348
BseSI GKGCMC 1 cut(s) 3038
BseXI GCAGC 8 cut(s) 781, 986, 1730, 1744, 2578, 2600, 2838, 2996
BsgI GTGCAG 1 cut(s) 946
Bsh1236I CGCG 1 cut(s) 1928
BshFI GGCC 5 cut(s) 355, 433, 754, 2610, 3058
BshVI ATCGAT 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 2779, 2821
BsiHKCI CYCGRG 1 cut(s) 1187
BsiSI CCGG 2 cut(s) 985, 1149
BslFI GGGAC 4 cut(s) 769, 1124, 1935, 2824
BslI CCNNNNNNNGG 6 cut(s) 374, 872, 991, 1148, 1852, 3054
BsmAI GTCTC 6 cut(s) 84, 1720, 2167, 2527, 3164, 3268
BsmBI CGTCTC 1 cut(s) 2527
BsmFI GGGAC 4 cut(s) 769, 1124, 1935, 2824
BsmI GAATGC 3 cut(s) 628, 844, 1255
BsnI GGCC 5 cut(s) 355, 433, 754, 2610, 3058
Bso31I GGTCTC 5 cut(s) 84, 1720, 2167, 3164, 3268
BsoBI CYCGRG 1 cut(s) 1187
Bsp119I TTCGAA 1 cut(s) 1902
Bsp1286I GDGCHC 3 cut(s) 2779, 2821, 3038
Bsp13I TCCGGA 2 cut(s) 984, 1148
Bsp1720I GCTNAGC 1 cut(s) 1761
BspACI CCGC 3 cut(s) 959, 1810, 1872
BspANI GGCC 5 cut(s) 355, 433, 754, 2610, 3058
BspCNI CTCAG 8 cut(s) 96, 647, 1609, 1774, 2158, 2590, 2791, 3060
BspDI ATCGAT 1 cut(s) 60
BspEI TCCGGA 2 cut(s) 984, 1148
BspFNI CGCG 1 cut(s) 1928
BspHI TCATGA 1 cut(s) 1329
BspLI GGNNCC 6 cut(s) 123, 434, 861, 983, 1140, 1194
BspPI GGATC 8 cut(s) 1187, 1200, 1301, 2070, 2401, 2485, 3072, 3083
BspT104I TTCGAA 1 cut(s) 1902
BspTI CTTAAG 2 cut(s) 1418, 1457
BspTNI GGTCTC 5 cut(s) 84, 1720, 2167, 3164, 3268
BsrDI GCAATG 2 cut(s) 384, 2709
BsrI ACTGG 3 cut(s) 877, 2203, 3059
BssECI CCNNGG 1 cut(s) 2338
BssNI GRCGYC 1 cut(s) 2770
BssT1I CCWWGG 1 cut(s) 2338
Bst2UI CCWGG 5 cut(s) 119, 867, 1524, 2600, 2906
Bst6I CTCTTC 1 cut(s) 2343
BstACI GRCGYC 1 cut(s) 2770
BstAFI CTTAAG 2 cut(s) 1418, 1457
BstBAI YACGTR 1 cut(s) 2444
BstBI TTCGAA 1 cut(s) 1902
BstC8I GCNNGC 7 cut(s) 237, 1658, 1669, 1911, 2179, 2302, 3014
BstDEI CTNAG 9 cut(s) 83, 634, 1596, 1761, 2166, 2577, 2698, 2778, 3068
BstFNI CGCG 1 cut(s) 1928
BstH2I RGCGCY 1 cut(s) 2438
BstHHI GCGC 2 cut(s) 944, 2437
BstMAI GTCTC 6 cut(s) 84, 1720, 2167, 2527, 3164, 3268
BstMWI GCNNNNNNNGC 2 cut(s) 2432, 2588
BstNI CCWGG 5 cut(s) 119, 867, 1524, 2600, 2906
BstNSI RCATGY 1 cut(s) 942
BstPAI GACNNNNGTC 1 cut(s) 398
BstSCI CCNGG 5 cut(s) 117, 865, 1522, 2598, 2904
BstSFI CTRYAG 3 cut(s) 528, 2871, 3263
BstSLI GKGCMC 1 cut(s) 3038
BstUI CGCG 1 cut(s) 1928
BstV1I GCAGC 8 cut(s) 781, 986, 1730, 1744, 2578, 2600, 2838, 2996
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 3 cut(s) 379, 1192, 3064
BstYI RGATCY 3 cut(s) 379, 1192, 3064
Bsu15I ATCGAT 1 cut(s) 60
Bsu36I CCTNAGG 1 cut(s) 1596
BsuI GTATCC 1 cut(s) 1817
BsuRI GGCC 5 cut(s) 355, 433, 754, 2610, 3058
BsuTUI ATCGAT 1 cut(s) 60
BtrI CACGTC 1 cut(s) 2537
BtsI GCAGTG 2 cut(s) 1728, 3189
BtsIMutI CAGTG 9 cut(s) 1728, 2196, 2224, 2370, 2500, 2715, 2997, 3066, 3189
Cac8I GCNNGC 7 cut(s) 237, 1658, 1669, 1911, 2179, 2302, 3014
CciI TCATGA 1 cut(s) 1329
CfoI GCGC 2 cut(s) 944, 2437
Cfr13I GGNCC 7 cut(s) 353, 432, 753, 860, 1138, 1520, 2018
ClaI ATCGAT 1 cut(s) 60
CseI GACGC 2 cut(s) 2759, 2951
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 5 cut(s) 870, 1126, 1683, 1713, 2071
CspCI CAANNNNNGTGG 4 cut(s) 937, 972, 1719, 1754
CviQI GTAC 5 cut(s) 870, 1126, 1683, 1713, 2071
DdeI CTNAG 9 cut(s) 83, 634, 1596, 1761, 2166, 2577, 2698, 2778, 3068
DraI TTTAAA 2 cut(s) 804, 1468
DriI GACNNNNNGTC 1 cut(s) 891
EaeI YGGCCR 2 cut(s) 2608, 3056
Eam1104I CTCTTC 1 cut(s) 2343
Eam1105I GACNNNNNGTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 2343
EciI GGCGGA 1 cut(s) 1799
Ecl136II GAGCTC 1 cut(s) 2777
Eco130I CCWWGG 1 cut(s) 2338
Eco24I GRGCYC 1 cut(s) 2779
Eco31I GGTCTC 5 cut(s) 84, 1720, 2167, 3164, 3268
Eco32I GATATC 1 cut(s) 2971
Eco47I GGWCC 4 cut(s) 860, 1138, 1520, 2018
Eco53kI GAGCTC 1 cut(s) 2777
Eco57I CTGAAG 1 cut(s) 1604
Eco72I CACGTG 1 cut(s) 2444
Eco81I CCTNAGG 1 cut(s) 1596
Eco88I CYCGRG 1 cut(s) 1187
EcoICRI GAGCTC 1 cut(s) 2777
EcoO109I RGGNCCY 2 cut(s) 432, 860
EcoRI GAATTC 3 cut(s) 503, 1615, 2890
EcoRII CCWGG 5 cut(s) 117, 865, 1522, 2598, 2904
EcoRV GATATC 1 cut(s) 2971
EcoT14I CCWWGG 1 cut(s) 2338
EcoT22I ATGCAT 2 cut(s) 416, 1962
EcoT38I GRGCYC 1 cut(s) 2779
ErhI CCWWGG 1 cut(s) 2338
Esp3I CGTCTC 1 cut(s) 2527
FalI AAGNNNNNCTT 4 cut(s) 2657, 2689, 3022, 3054
FaqI GGGAC 4 cut(s) 769, 1124, 1935, 2824
FbaI TGATCA 2 cut(s) 1105, 2119
FblI GTMKAC 2 cut(s) 1183, 2874
Fnu4HI GCNGC 8 cut(s) 795, 975, 1719, 1758, 2589, 2592, 2852, 3010
FriOI GRGCYC 1 cut(s) 2779
Fsp4HI GCNGC 8 cut(s) 795, 975, 1719, 1758, 2589, 2592, 2852, 3010
FspBI CTAG 4 cut(s) 12, 2516, 2679, 2954
GlaI GCGC 2 cut(s) 943, 2436
GluI GCNGC 8 cut(s) 795, 975, 1719, 1758, 2589, 2592, 2852, 3010
GsuI CTGGAG 2 cut(s) 2621, 2867
HaeII RGCGCY 1 cut(s) 2438
HaeIII GGCC 5 cut(s) 355, 433, 754, 2610, 3058
HapII CCGG 2 cut(s) 985, 1149
HgaI GACGC 2 cut(s) 2759, 2951
HhaI GCGC 2 cut(s) 944, 2437
Hin1I GRCGYC 1 cut(s) 2770
Hin6I GCGC 2 cut(s) 942, 2435
HinP1I GCGC 2 cut(s) 942, 2435
HincII GTYRAC 1 cut(s) 2491
HindII GTYRAC 1 cut(s) 2491
HindIII AAGCTT 3 cut(s) 294, 1443, 2753
HpaI GTTAAC 1 cut(s) 2491
HpaII CCGG 2 cut(s) 985, 1149
HphI GGTGA 4 cut(s) 1367, 1438, 2226, 2357
Hpy166II GTNNAC 7 cut(s) 1184, 1381, 1454, 1551, 1580, 2491, 2875
Hpy8I GTNNAC 7 cut(s) 1184, 1381, 1454, 1551, 1580, 2491, 2875
Hpy99I CGWCG 2 cut(s) 523, 2775
HpyAV CCTTC 9 cut(s) 189, 632, 1060, 1261, 1423, 2206, 2659, 2776, 2908
HpyCH4IV ACGT 3 cut(s) 2443, 2536, 2935
HpyF10VI GCNNNNNNNGC 2 cut(s) 2432, 2588
HpyF3I CTNAG 9 cut(s) 83, 634, 1596, 1761, 2166, 2577, 2698, 2778, 3068
HpySE526I ACGT 3 cut(s) 2443, 2536, 2935
Hsp92I GRCGYC 1 cut(s) 2770
HspAI GCGC 2 cut(s) 942, 2435
Kpn2I TCCGGA 2 cut(s) 984, 1148
Ksp22I TGATCA 2 cut(s) 1105, 2119
KspAI GTTAAC 1 cut(s) 2491
LmnI GCTCC 3 cut(s) 949, 987, 2602
Lsp1109I GCAGC 8 cut(s) 781, 986, 1730, 1744, 2578, 2600, 2838, 2996
LweI GCATC 9 cut(s) 1261, 1348, 1697, 1942, 1947, 1969, 2287, 2515, 2531
MabI ACCWGGT 1 cut(s) 117
MaeI CTAG 4 cut(s) 12, 2516, 2679, 2954
MaeII ACGT 3 cut(s) 2443, 2536, 2935
MaeIII GTNAC 5 cut(s) 151, 469, 1497, 2495, 2929
MboII GAAGA 8 cut(s) 19, 1464, 1902, 1928, 2221, 2360, 3111, 3147
MfeI CAATTG 1 cut(s) 2397
MflI RGATCY 3 cut(s) 379, 1192, 3064
MhlI GDGCHC 3 cut(s) 2779, 2821, 3038
MlsI TGGCCA 2 cut(s) 2610, 3058
MluNI TGGCCA 2 cut(s) 2610, 3058
MlyI GAGTC 6 cut(s) 220, 791, 2280, 2492, 2630, 3205
MmeI TCCRAC 1 cut(s) 355
Mox20I TGGCCA 2 cut(s) 2610, 3058
Mph1103I ATGCAT 2 cut(s) 416, 1962
MroI TCCGGA 2 cut(s) 984, 1148
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 2 cut(s) 2610, 3058
MslI CAYNNNNRTG 2 cut(s) 837, 937
Msp20I TGGCCA 2 cut(s) 2610, 3058
MspA1I CMGCKG 1 cut(s) 2591
MspCI CTTAAG 2 cut(s) 1418, 1457
MspI CCGG 2 cut(s) 985, 1149
MspR9I CCNGG 5 cut(s) 119, 867, 1524, 2600, 2906
MunI CAATTG 1 cut(s) 2397
Mva1269I GAATGC 3 cut(s) 628, 844, 1255
MvaI CCWGG 5 cut(s) 119, 867, 1524, 2600, 2906
MvnI CGCG 1 cut(s) 1928
MwoI GCNNNNNNNGC 2 cut(s) 2432, 2588
NlaIV GGNNCC 6 cut(s) 123, 434, 861, 983, 1140, 1194
NmeAIII GCCGAG 1 cut(s) 2554
NmuCI GTSAC 4 cut(s) 151, 469, 2495, 2929
NsiI ATGCAT 2 cut(s) 416, 1962
NspI RCATGY 1 cut(s) 942
NspV TTCGAA 1 cut(s) 1902
PaeR7I CTCGAG 1 cut(s) 1187
PagI TCATGA 1 cut(s) 1329
PcsI WCGNNNNNNNCGW 1 cut(s) 152
PctI GAATGC 3 cut(s) 628, 844, 1255
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 9 cut(s) 130, 343, 1169, 1346, 1778, 2260, 2291, 2857, 3004
PflFI GACNNNGTC 1 cut(s) 229
PflMI CCANNNNNTGG 2 cut(s) 374, 3054
PfoI TCCNGGA 2 cut(s) 1522, 2598
PkrI GCNGC 8 cut(s) 796, 976, 1720, 1759, 2590, 2593, 2853, 3011
PleI GAGTC 6 cut(s) 220, 790, 2279, 2492, 2630, 3205
PmaCI CACGTG 1 cut(s) 2444
PmlI CACGTG 1 cut(s) 2444
PpsI GAGTC 6 cut(s) 220, 790, 2279, 2492, 2630, 3205
Ppu21I YACGTR 1 cut(s) 2444
PpuMI RGGWCCY 1 cut(s) 860
PshAI GACNNNNGTC 1 cut(s) 398
PshBI ATTAAT 2 cut(s) 851, 1629
PsiI TTATAA 1 cut(s) 2090
Psp124BI GAGCTC 1 cut(s) 2779
Psp5II RGGWCCY 1 cut(s) 860
Psp6I CCWGG 5 cut(s) 117, 865, 1522, 2598, 2904
PspCI CACGTG 1 cut(s) 2444
PspGI CCWGG 5 cut(s) 117, 865, 1522, 2598, 2904
PspN4I GGNNCC 6 cut(s) 123, 434, 861, 983, 1140, 1194
PspPI GGNCC 7 cut(s) 353, 432, 753, 860, 1138, 1520, 2018
PspPPI RGGWCCY 1 cut(s) 860
PspXI VCTCGAGB 1 cut(s) 1187
PsuI RGATCY 3 cut(s) 379, 1192, 3064
PsyI GACNNNGTC 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 2591
RsaI GTAC 5 cut(s) 871, 1127, 1684, 1714, 2072
RsaNI GTAC 5 cut(s) 870, 1126, 1683, 1713, 2071
RseI CAYNNNNRTG 2 cut(s) 837, 937
SacI GAGCTC 1 cut(s) 2779
SatI GCNGC 8 cut(s) 795, 975, 1719, 1758, 2589, 2592, 2852, 3010
Sau96I GGNCC 7 cut(s) 353, 432, 753, 860, 1138, 1520, 2018
SchI GAGTC 6 cut(s) 220, 791, 2280, 2492, 2630, 3205
ScrFI CCNGG 5 cut(s) 119, 867, 1524, 2600, 2906
SduI GDGCHC 3 cut(s) 2779, 2821, 3038
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 9 cut(s) 1261, 1348, 1697, 1942, 1947, 1969, 2287, 2515, 2531
SfcI CTRYAG 3 cut(s) 528, 2871, 3263
Sfr274I CTCGAG 1 cut(s) 1187
SfuI TTCGAA 1 cut(s) 1902
SinI GGWCC 4 cut(s) 860, 1138, 1520, 2018
SlaI CTCGAG 1 cut(s) 1187
SmiMI CAYNNNNRTG 2 cut(s) 837, 937
SmlI CTYRAG 8 cut(s) 479, 1007, 1187, 1254, 1418, 1457, 2057, 2247
SmoI CTYRAG 8 cut(s) 479, 1007, 1187, 1254, 1418, 1457, 2057, 2247
SpeI ACTAGT 1 cut(s) 2678
SsiI CCGC 3 cut(s) 959, 1810, 1872
SspI AATATT 3 cut(s) 269, 955, 1677
SspMI CTAG 4 cut(s) 12, 2516, 2679, 2954
SstI GAGCTC 1 cut(s) 2779
StyD4I CCNGG 5 cut(s) 117, 865, 1522, 2598, 2904
StyI CCWWGG 1 cut(s) 2338
TaiI ACGT 3 cut(s) 2446, 2539, 2938
TaqII GACCGA 1 cut(s) 3116
TatI WGTACW 1 cut(s) 1682
TfiI GAWTC 9 cut(s) 130, 343, 1169, 1346, 1778, 2260, 2291, 2857, 3004
TscAI CASTG 9 cut(s) 1728, 2203, 2224, 2377, 2500, 2722, 2997, 3066, 3189
TseFI GTSAC 4 cut(s) 151, 469, 2495, 2929
TseI GCWGC 8 cut(s) 794, 974, 1718, 1757, 2588, 2591, 2851, 3009
Tsp45I GTSAC 4 cut(s) 151, 469, 2495, 2929
TspRI CASTG 9 cut(s) 1728, 2203, 2224, 2377, 2500, 2722, 2997, 3066, 3189
Tth111I GACNNNGTC 1 cut(s) 229
Van91I CCANNNNNTGG 2 cut(s) 374, 3054
Vha464I CTTAAG 2 cut(s) 1418, 1457
VpaK11BI GGWCC 4 cut(s) 860, 1138, 1520, 2018
VspI ATTAAT 2 cut(s) 851, 1629
XapI RAATTY 9 cut(s) 503, 1340, 1601, 1615, 1634, 1883, 2114, 2684, 2890
XceI RCATGY 1 cut(s) 942
XhoI CTCGAG 1 cut(s) 1187
XmiI GTMKAC 2 cut(s) 1183, 2874
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 4 cut(s) 12, 2516, 2679, 2954
Zsp2I ATGCAT 2 cut(s) 416, 1962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.