Rh3CG321500

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000279
Physical Location & Seq
Forward (+)
34617342 .. 34624615
7274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG321500.1

Sequence Viewer

Length: 756 bp
ATGTGCTATTCTAAACAATCGTCTCCACCACCTATACTGATTGAGGAATCTAAGATCGAGACCGAGGAGAAGAAGGAGATCGAGGTTGAAATCGAGTCAGACATCGTCAAGAAGAAGACTCAGGCCCATAGTGGCTCTGTGCAGACGATCCCCGACACATTTGTGACATTGACGAGTTACAAGAAGTCATTCATTCCTTCACTTGTTGAGGAAGCTCATGCTGATTTACTATCGAATATGTTGACTCTGTCACATGCACCTACTTGTGAAATTCTGACAATTGAAGATTCAGCTGAACCTCCTGGTGACTTGTTTTATGATATAACATCACAGGAACGAAGACCACTGGAATTGTTGGTCATTGATGAAGCTGCTCAGCTTAAAGAATGTGAATCAGCAATTCCTTTACAACTATCTAGTCTCCGCCGTGCTATCCTTGTAGGAGATGAGAGGCAACTCCCTGCCATGGTTAAAAGCGAGATTGCAGCAAGTGCTGATTTTGGGAGAAGTTTGTTTGGAAGGCTGGCAAAGTTGGGATACAAGAAGCATCTACTCAATGTCCAGTACAGGTTGCATCCATCCGTCAGTTTATTTCCGAAAAGGGAGTTCTACGATAACCAGATATTAGATGGTCCAAATGTCAAAGAAAGAAGCTATGAGAGGTGCTTCCTCAAGGGAAAAATTTACCAATCCTATTCCTTCATAAATGTAGCTAATGGAAAAATATGGTGGAGATTGCTGTTGTCTCTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

251

Amino Acids

28.51

Weight (kDa)

5.68

Isoelectric Point (pI)

60.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_11 PF13086 115 - 160 1.1e-12 AAA domain
AAA_12 PF13087 168 - 240 2.3e-12 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 424
AclWI GGATC 1 cut(s) 142
AcsI RAATTY 2 cut(s) 270, 681
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 1 cut(s) 466
AgsI TTSAA 2 cut(s) 89, 284
AjnI CCWGG 1 cut(s) 301
AleI CACNNNNGTG 1 cut(s) 161
AluBI AGCT 6 cut(s) 215, 293, 371, 379, 654, 713
AluI AGCT 6 cut(s) 215, 293, 371, 379, 654, 713
Alw26I GTCTC 4 cut(s) 27, 53, 425, 750
AlwI GGATC 1 cut(s) 142
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 2 cut(s) 371, 485
ApoI RAATTY 2 cut(s) 270, 681
Asp700I GAANNNNTTC 1 cut(s) 188
AspS9I GGNCC 2 cut(s) 124, 632
AsuHPI GGTGA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 632
BbsI GAAGAC 2 cut(s) 122, 346
BbvI GCAGC 2 cut(s) 358, 497
BccI CCATC 2 cut(s) 586, 623
BceAI ACGGC 1 cut(s) 411
BciT130I CCWGG 1 cut(s) 303
BciVI GTATCC 1 cut(s) 530
BcoDI GTCTC 4 cut(s) 27, 53, 425, 750
BfaI CTAG 1 cut(s) 417
BfuI GTATCC 1 cut(s) 530
BisI GCNGC 2 cut(s) 372, 486
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 2 cut(s) 373, 487
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 632
BmgT120I GGNCC 2 cut(s) 124, 632
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 556, 583
BpiI GAAGAC 2 cut(s) 122, 346
Bpu1102I GCTNAGC 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 656
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 63, 465
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse1I ACTGG 2 cut(s) 351, 562
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 63, 465
BseGI GGATG 2 cut(s) 574, 578
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMII CTCAG 2 cut(s) 134, 389
BseNI ACTGG 2 cut(s) 351, 562
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 2 cut(s) 358, 497
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 466
BsmAI GTCTC 4 cut(s) 27, 53, 425, 750
BsmBI CGTCTC 1 cut(s) 27
BsnI GGCC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 53
Bsp143I GATC 3 cut(s) 54, 78, 147
Bsp1720I GCTNAGC 1 cut(s) 375
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 1 cut(s) 424
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 133, 388
BspPI GGATC 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 53
BsrI ACTGG 2 cut(s) 351, 562
BssECI CCNNGG 2 cut(s) 63, 465
BssMI GATC 3 cut(s) 54, 78, 147
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 3 cut(s) 51, 120, 375
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 2 cut(s) 574, 578
BstKTI GATC 3 cut(s) 57, 81, 150
BstMAI GTCTC 4 cut(s) 27, 53, 425, 750
BstMBI GATC 3 cut(s) 54, 78, 147
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstNI CCWGG 1 cut(s) 303
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 301
BstV1I GCAGC 2 cut(s) 358, 497
BstV2I GAAGAC 2 cut(s) 122, 346
BsuI GTATCC 1 cut(s) 530
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 2 cut(s) 574, 578
BtsIMutI CAGTG 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 525
Cfr13I GGNCC 2 cut(s) 124, 632
Csp6I GTAC 1 cut(s) 565
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 3 cut(s) 218, 254, 466
CviJI RGCY 9 cut(s) 125, 135, 215, 293, 371, 379, 523, 654, 713
CviKI_1 RGCY 9 cut(s) 125, 135, 215, 293, 371, 379, 523, 654, 713
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 3 cut(s) 51, 120, 375
DpnI GATC 3 cut(s) 56, 80, 149
DpnII GATC 3 cut(s) 54, 78, 147
EciI GGCGGA 1 cut(s) 413
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 3 cut(s) 221, 257, 469
FatI CATG 3 cut(s) 217, 253, 465
Fnu4HI GCNGC 2 cut(s) 372, 486
FokI GGATG 2 cut(s) 561, 565
Fsp4HI GCNGC 2 cut(s) 372, 486
FspBI CTAG 1 cut(s) 417
GluI GCNGC 2 cut(s) 372, 486
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 3 cut(s) 221, 257, 469
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 6 cut(s) 47, 95, 118, 244, 287, 392
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 3 cut(s) 100, 276, 597
Hpy188III TCNNGA 3 cut(s) 58, 109, 749
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 4 cut(s) 67, 207, 513, 709
HpyCH4V TGCA 4 cut(s) 142, 257, 485, 574
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 3 cut(s) 51, 120, 375
Hsp92II CATG 3 cut(s) 221, 257, 469
Kzo9I GATC 3 cut(s) 54, 78, 147
Lsp1109I GCAGC 2 cut(s) 358, 497
LweI GCATC 2 cut(s) 556, 583
MaeI CTAG 1 cut(s) 417
MaeIII GTNAC 4 cut(s) 163, 176, 249, 305
MalI GATC 3 cut(s) 56, 80, 149
MboI GATC 3 cut(s) 54, 78, 147
MboII GAAGA 5 cut(s) 82, 124, 127, 296, 351
MfeI CAATTG 1 cut(s) 279
MluCI AATT 5 cut(s) 270, 279, 350, 399, 681
MlyI GAGTC 3 cut(s) 104, 112, 238
MnlI CCTC 8 cut(s) 37, 58, 76, 202, 309, 444, 654, 680
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 2 cut(s) 381, 471
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 303
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 491
NcoI CCATGG 1 cut(s) 465
NdeII GATC 3 cut(s) 54, 78, 147
NlaIII CATG 3 cut(s) 221, 257, 469
NmuCI GTSAC 3 cut(s) 163, 249, 305
NspI RCATGY 1 cut(s) 257
OliI CACNNNNGTG 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 3 cut(s) 47, 287, 392
PflFI GACNNNGTC 2 cut(s) 104, 247
PkrI GCNGC 2 cut(s) 373, 487
PleI GAGTC 3 cut(s) 103, 112, 238
PpsI GAGTC 3 cut(s) 103, 112, 238
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspPI GGNCC 2 cut(s) 124, 632
PsyI GACNNNGTC 2 cut(s) 104, 247
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 2 cut(s) 381, 471
SatI GCNGC 2 cut(s) 372, 486
Sau3AI GATC 3 cut(s) 54, 78, 147
Sau96I GGNCC 2 cut(s) 124, 632
SchI GAGTC 3 cut(s) 104, 112, 238
ScrFI CCNGG 1 cut(s) 303
SfaNI GCATC 2 cut(s) 556, 583
SinI GGWCC 1 cut(s) 632
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
Sse9I AATT 5 cut(s) 270, 279, 350, 399, 681
SsiI CCGC 1 cut(s) 424
SspMI CTAG 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 1 cut(s) 465
TaqI TCGA 4 cut(s) 57, 81, 93, 233
TaqII GACCGA 1 cut(s) 77
TasI AATT 5 cut(s) 270, 279, 350, 399, 681
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 3 cut(s) 47, 287, 392
Tru1I TTAA 2 cut(s) 381, 471
Tru9I TTAA 2 cut(s) 381, 471
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 3 cut(s) 163, 249, 305
TseI GCWGC 2 cut(s) 371, 485
Tsp45I GTSAC 3 cut(s) 163, 249, 305
TspDTI ATGAA 3 cut(s) 181, 381, 691
TspGWI ACGGA 1 cut(s) 571
TspRI CASTG 1 cut(s) 351
Tth111I GACNNNGTC 2 cut(s) 104, 247
VpaK11BI GGWCC 1 cut(s) 632
XapI RAATTY 2 cut(s) 270, 681
XceI RCATGY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.