Rh3BG322800

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000279
Physical Location & Seq
Reverse (-)
33307535 .. 33308080
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG322800.1

Sequence Viewer

Length: 546 bp
ATGAAATCATTCATTCCTCCACTTGTTGAGGAAACTCATGCTGATTTACTATCGAATATGTTGACTCTGTCACATGCACCTACTTGTGAAATTCTTACAATCGAAGATTCAGCTGGACCTCCTGGTGACTTGTTTTATGATATAACGTATCAGAGAGATACAGAAACTGATGAGAATGACAAAGGACTGATGTATGAGCCACAGGTTGGAGATATCATTGCCTTGACTAATGTTAGACCAAAATGCATTGATGATTTGAACAGGCCTCCAAGGTTCTATCTAATCGCTTATGTTGATAAAGCAAATGATATTGATGAATATCCTGATGATCTCCAGTTCAAAATACTATCATCGAAGCCTATCAACTATGGAGAACCAGACATGCATAAGAGCAAGAGAGAAACACTTTTTGCTGTCTATCTTATGAACTTCACAACAAATATCCTTGTATGGAAGGCTTTGAACTCAGAGGGAAATACAAATATCACTAACAAAGTTCTACAACCCAACTCAGATGTATATATTTATATATGGAGACTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

181

Amino Acids

20.8

Weight (kDa)

4.55

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 27 - 159 1.3e-13 Domain of unknown function (DUF6469)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 206
AcsI RAATTY 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 3 cut(s) 259, 340, 463
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 529
AlwNI CAGNNNCTG 1 cut(s) 167
AoxI GGCC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 90
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 529
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 269
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 318
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 269
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 2 cut(s) 480, 525
BseNI ACTGG 1 cut(s) 334
BshFI GGCC 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 529
BsnI GGCC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 328
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 2 cut(s) 479, 524
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 269
BssMI GATC 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 466, 511
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 1 cut(s) 328
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 2 cut(s) 77, 385
BstSCI CCNGG 1 cut(s) 121
BsuRI GGCC 1 cut(s) 265
CaiI CAGNNNCTG 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 116
CviAII CATG 3 cut(s) 38, 74, 382
CviJI RGCY 5 cut(s) 113, 199, 265, 358, 458
CviKI_1 RGCY 5 cut(s) 113, 199, 265, 358, 458
DdeI CTNAG 2 cut(s) 466, 511
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 269
Eco147I AGGCCT 1 cut(s) 265
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 121
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 269
EcoT22I ATGCAT 2 cut(s) 248, 387
ErhI CCWWGG 1 cut(s) 269
FaeI CATG 3 cut(s) 41, 77, 385
FatI CATG 3 cut(s) 37, 73, 381
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 1 cut(s) 265
Hin1II CATG 3 cut(s) 41, 77, 385
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 3 cut(s) 64, 107, 537
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 3 cut(s) 153, 469, 514
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 448
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 3 cut(s) 77, 246, 385
HpyF3I CTNAG 2 cut(s) 466, 511
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 3 cut(s) 41, 77, 385
Kzo9I GATC 1 cut(s) 328
LpnPI CCDG 8 cut(s) 99, 108, 135, 188, 247, 336, 347, 390
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 2 cut(s) 69, 125
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 1 cut(s) 116
MluCI AATT 1 cut(s) 90
MlyI GAGTC 2 cut(s) 58, 531
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 5 cut(s) 22, 27, 129, 276, 463
Mph1103I ATGCAT 2 cut(s) 248, 387
MroXI GAANNNNTTC 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
NdeII GATC 1 cut(s) 328
NlaIII CATG 3 cut(s) 41, 77, 385
NmuCI GTSAC 2 cut(s) 69, 125
NsiI ATGCAT 2 cut(s) 248, 387
NspI RCATGY 2 cut(s) 77, 385
PceI AGGCCT 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 107
PflFI GACNNNGTC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 206
PleI GAGTC 2 cut(s) 58, 531
PpsI GAGTC 2 cut(s) 58, 531
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspPI GGNCC 1 cut(s) 116
PstNI CAGNNNCTG 1 cut(s) 167
PsyI GACNNNGTC 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 113
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 2 cut(s) 58, 531
ScrFI CCNGG 1 cut(s) 123
SetI ASST 6 cut(s) 82, 115, 121, 149, 207, 275
SinI GGWCC 1 cut(s) 116
Sse9I AATT 1 cut(s) 90
SseBI AGGCCT 1 cut(s) 265
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 269
TaiI ACGT 1 cut(s) 149
TaqI TCGA 3 cut(s) 53, 102, 353
TasI AATT 1 cut(s) 90
TfiI GAWTC 1 cut(s) 107
TseFI GTSAC 2 cut(s) 69, 125
Tsp45I GTSAC 2 cut(s) 69, 125
TspDTI ATGAA 3 cut(s) 17, 330, 440
Tth111I GACNNNGTC 1 cut(s) 67
Van91I CCANNNNNTGG 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 90
XceI RCATGY 2 cut(s) 77, 385
XmnI GAANNNNTTC 1 cut(s) 8
Zsp2I ATGCAT 2 cut(s) 248, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.