Rw2G014710

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000279
Physical Location & Seq
Reverse (-)
16787486 .. 16788732
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014710.1

Sequence Viewer

Length: 879 bp
ATGCCTCCTGGAGTCCTGTGTGTGATATTTATGTCTATTGTCCGATGTAATGGGAATGGGTCAGTTGGTTTCTTGTCAAACCAGCAAAGAGCAATTGTTGCCTTAGCACGTGCAAGGTATTGCCTTTGGATATTGGGGAATGCGTCAACTTTGATTGCTAGTGACTCTGTTTGGAAGAAGCTAGTCCTTGATGCCAAGAAACGGAACTGTTTTTATAATGCTGATGAAGACAGCAACTTGGCTCAGGCTATTACAGCTGCCCTGCTGGAGCTTGACCAACTTCATTCTCTGCTTAATATCGACTCTCTGCTGTTCAAAAACACTATATGGAAGGTTTGCTTCACTCATGACTTTTTGAACTCCATAACAAAAGTTAAAGACATTGTGATTCTTTGCAAAGTGCTTGCGTTATTAACCAAGCTTTTGAGTGGATGGCGCCGACCTCTTGAGGACAAAGGAACTTTAGTGTATGATGGGACTTCTGCTCAACTGTTAGAGAAGTATAAAATCAAAGGGAACTTGAATCTCATTTGGACTGTAGATATTCTCCAGGAGAATGCACATTACATCCAAATTATGAAGTTTTGGGATATTTTGCCATTTTCTCATATACCAGAACTAGCAAAGCGTCTTGACATTGTTTTTGGGAATTTTACAGTGGACAAAATGAACCGCTGCCATCACAAATGCGTTGACAGGTATGTGATGTTTCAAATTTTTTCTTTTCATACATTTGTTAGTCCATGGAACTTTTATTCCATCAATTTGGGTCAGAGAAATTTCAATTGCATAAGTGGAGCATATATGATTACTAATACTACTTTTTATCCTCTGTTTAAATTATGTATCATTTTATTTAGGATACTATTGTTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

292

Amino Acids

33.61

Weight (kDa)

9.12

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_12 PF13087 8 - 48 1.4e-09 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 435
AciI CCGC 1 cut(s) 673
AcsI RAATTY 3 cut(s) 649, 714, 778
AcvI CACGTG 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 436
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 5 cut(s) 316, 358, 523, 713, 784
AjnI CCWGG 2 cut(s) 7, 549
AloI GAACNNNNNNTCC 2 cut(s) 740, 772
AluBI AGCT 4 cut(s) 181, 257, 271, 421
AluI AGCT 4 cut(s) 181, 257, 271, 421
ApeKI GCWGC 2 cut(s) 257, 675
ApoI RAATTY 3 cut(s) 649, 714, 778
ArsI GACNNNNNNTTYG 2 cut(s) 626, 658
AspLEI GCGC 1 cut(s) 438
BaeI ACNNNNGTAYC 1 cut(s) 854
BanI GGYRCC 1 cut(s) 435
BbrPI CACGTG 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 244, 662
BccI CCATC 4 cut(s) 426, 467, 687, 767
BciT130I CCWGG 2 cut(s) 9, 551
BciVI GTATCC 1 cut(s) 855
BfaI CTAG 3 cut(s) 159, 182, 620
BfmI CTRYAG 1 cut(s) 537
BfoI RGCGCY 1 cut(s) 439
BfuI GTATCC 1 cut(s) 855
BisI GCNGC 2 cut(s) 258, 676
BlsI GCNGC 2 cut(s) 259, 677
Bme1390I CCNGG 2 cut(s) 9, 551
BmiI GGNNCC 1 cut(s) 437
BmrFI CCNGG 2 cut(s) 9, 551
BmsI GCATC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 3 cut(s) 30, 287, 533
Bpu10I CCTNAGC 2 cut(s) 103, 243
BpuEI CTTGAG 1 cut(s) 467
BsaAI YACGTR 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 436
BsaJI CCNNGG 1 cut(s) 743
Bsc4I CCNNNNNNNGG 1 cut(s) 201
BseBI CCWGG 2 cut(s) 9, 551
BseDI CCNNGG 1 cut(s) 743
BseGI GGATG 2 cut(s) 437, 567
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 244, 662
BshNI GGYRCC 1 cut(s) 435
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 490
BsmI GAATGC 2 cut(s) 145, 562
Bsp19I CCATGG 1 cut(s) 743
BspACI CCGC 1 cut(s) 673
BspCNI CTCAG 1 cut(s) 256
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 435
BssECI CCNNGG 1 cut(s) 743
BssNI GRCGYC 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 743
Bst2UI CCWGG 2 cut(s) 9, 551
Bst4CI ACNGT 4 cut(s) 209, 492, 538, 658
BstACI GRCGYC 1 cut(s) 436
BstAPI GCANNNNNTGC 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 103, 243
BstDSI CCRYGG 1 cut(s) 743
BstF5I GGATG 2 cut(s) 437, 567
BstH2I RGCGCY 1 cut(s) 439
BstHHI GCGC 1 cut(s) 438
BstMWI GCNNNNNNNGC 2 cut(s) 98, 254
BstNI CCWGG 2 cut(s) 9, 551
BstSCI CCNGG 2 cut(s) 7, 549
BstSFI CTRYAG 1 cut(s) 537
BstV1I GCAGC 2 cut(s) 244, 662
BstV2I GAAGAC 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 766
BsuI GTATCC 1 cut(s) 855
BtgI CCRYGG 1 cut(s) 743
BtsCI GGATG 2 cut(s) 437, 567
BtsIMutI CAGTG 1 cut(s) 663
Cac8I GCNNGC 1 cut(s) 405
CciI TCATGA 1 cut(s) 346
CfoI GCGC 1 cut(s) 438
CseI GACGC 2 cut(s) 132, 617
CviAII CATG 2 cut(s) 347, 744
CviJI RGCY 6 cut(s) 181, 242, 248, 257, 271, 421
CviKI_1 RGCY 6 cut(s) 181, 242, 248, 257, 271, 421
DdeI CTNAG 2 cut(s) 103, 243
DinI GGCGCC 1 cut(s) 437
DraI TTTAAA 1 cut(s) 838
Eco130I CCWWGG 1 cut(s) 743
Eco72I CACGTG 1 cut(s) 110
EcoRII CCWGG 2 cut(s) 7, 549
EcoT14I CCWWGG 1 cut(s) 743
EgeI GGCGCC 1 cut(s) 437
EheI GGCGCC 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 743
FaeI CATG 2 cut(s) 350, 747
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 1 cut(s) 490
FatI CATG 2 cut(s) 346, 743
Fnu4HI GCNGC 2 cut(s) 258, 676
FokI GGATG 2 cut(s) 444, 554
Fsp4HI GCNGC 2 cut(s) 258, 676
FspBI CTAG 3 cut(s) 159, 182, 620
GlaI GCGC 1 cut(s) 437
GluI GCNGC 2 cut(s) 258, 676
GsuI CTGGAG 3 cut(s) 30, 287, 533
HaeII RGCGCY 1 cut(s) 439
HgaI GACGC 2 cut(s) 132, 617
HhaI GCGC 1 cut(s) 438
Hin1I GRCGYC 1 cut(s) 436
Hin1II CATG 2 cut(s) 350, 747
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HincII GTYRAC 2 cut(s) 147, 694
HindII GTYRAC 2 cut(s) 147, 694
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 5 cut(s) 12, 164, 302, 388, 523
Hpy166II GTNNAC 3 cut(s) 147, 661, 694
Hpy188I TCNGA 2 cut(s) 44, 774
Hpy188III TCNNGA 3 cut(s) 347, 446, 632
Hpy8I GTNNAC 3 cut(s) 147, 661, 694
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 4 cut(s) 209, 492, 538, 658
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 4 cut(s) 113, 396, 560, 789
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 254
HpyF3I CTNAG 2 cut(s) 103, 243
HpySE526I ACGT 1 cut(s) 109
Hsp92I GRCGYC 1 cut(s) 436
Hsp92II CATG 2 cut(s) 350, 747
HspAI GCGC 1 cut(s) 436
KasI GGCGCC 1 cut(s) 435
LmnI GCTCC 2 cut(s) 268, 797
Lsp1109I GCAGC 2 cut(s) 244, 662
LweI GCATC 1 cut(s) 181
MaeI CTAG 3 cut(s) 159, 182, 620
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 161
MboII GAAGA 2 cut(s) 187, 239
MfeI CAATTG 2 cut(s) 93, 784
MluCI AATT 8 cut(s) 93, 573, 649, 714, 763, 778, 784, 839
Mly113I GGCGCC 1 cut(s) 436
MlyI GAGTC 3 cut(s) 21, 158, 296
MnlI CCTC 4 cut(s) 15, 442, 453, 840
MseI TTAA 4 cut(s) 294, 375, 413, 837
MspA1I CMGCKG 2 cut(s) 257, 675
MspR9I CCNGG 2 cut(s) 9, 551
MunI CAATTG 2 cut(s) 93, 784
Mva1269I GAATGC 2 cut(s) 145, 562
MvaI CCWGG 2 cut(s) 9, 551
MwoI GCNNNNNNNGC 2 cut(s) 98, 254
NarI GGCGCC 1 cut(s) 436
NcoI CCATGG 1 cut(s) 743
NlaIII CATG 2 cut(s) 350, 747
NlaIV GGNNCC 1 cut(s) 437
NmuCI GTSAC 1 cut(s) 161
PagI TCATGA 1 cut(s) 346
PctI GAATGC 2 cut(s) 145, 562
PfeI GAWTC 2 cut(s) 388, 523
PfoI TCCNGGA 2 cut(s) 7, 549
PkrI GCNGC 2 cut(s) 259, 677
PleI GAGTC 3 cut(s) 20, 158, 296
PluTI GGCGCC 1 cut(s) 439
PmaCI CACGTG 1 cut(s) 110
PmlI CACGTG 1 cut(s) 110
PpsI GAGTC 3 cut(s) 20, 158, 296
Ppu21I YACGTR 1 cut(s) 110
PsiI TTATAA 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 7, 549
PspCI CACGTG 1 cut(s) 110
PspGI CCWGG 2 cut(s) 7, 549
PspN4I GGNNCC 1 cut(s) 437
PvuII CAGCTG 1 cut(s) 257
SaqAI TTAA 4 cut(s) 294, 375, 413, 837
SatI GCNGC 2 cut(s) 258, 676
SchI GAGTC 3 cut(s) 21, 158, 296
ScrFI CCNGG 2 cut(s) 9, 551
SetI ASST 9 cut(s) 112, 119, 183, 259, 273, 336, 423, 445, 701
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 537
SfoI GGCGCC 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 8 cut(s) 93, 573, 649, 714, 763, 778, 784, 839
SsiI CCGC 1 cut(s) 673
SspDI GGCGCC 1 cut(s) 435
SspMI CTAG 3 cut(s) 159, 182, 620
StyD4I CCNGG 2 cut(s) 7, 549
StyI CCWWGG 1 cut(s) 743
TaaI ACNGT 4 cut(s) 209, 492, 538, 658
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 300
TasI AATT 8 cut(s) 93, 573, 649, 714, 763, 778, 784, 839
TfiI GAWTC 2 cut(s) 388, 523
Tru1I TTAA 4 cut(s) 294, 375, 413, 837
Tru9I TTAA 4 cut(s) 294, 375, 413, 837
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 2 cut(s) 257, 675
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 5 cut(s) 240, 272, 593, 683, 716
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 1 cut(s) 663
XapI RAATTY 3 cut(s) 649, 714, 778
XspI CTAG 3 cut(s) 159, 182, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.