Rh3BG324300

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000279
Physical Location & Seq
Forward (+)
33682865 .. 33694547
11683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG324300.1

Sequence Viewer

Length: 600 bp
ATGAGGAGGATAATCGAAAAACACAATGGTGATGAGGATTATCCTTTGACATTTGAGGAGTTTGTGAAGAATGAATTTGATTCAATCAGTCAGGAGCTGAAGATTTGTATGGGGAATGCACATTACATCCAAGTTATGAAGTTTTGGGATATTTTGCCATTTTCTCATATACCAGAACTAGCAAAGCGTCTTGACATTGTTTTTGGAAATTTTACAGTGGATAAGATGAACCGCTGCAGGCACAAATGCATTGACAGGGATATTGTTGTTCCAATGAGGTGGCTGGTGGTTTTCAGCAATTTTCCTATAGCTGATCATGAGGAGTTCCTTTCAAAACCATTGTCTTCTTTCAGTATAACAACTAATCAAGAAACAGCAACTTCAACATATGGGGAGACAGCGAAAGCAGTAAAATCAATTATCCCTTCGAAAAGCAATGTCAATCAAAAAGAAAGATTGTTATGGAAAGAAAAGGCTGAGGAAGGAGAAGAGGATTTCAGCACTTGCCTTGAAGCTAATTCTTTGGAGTTCTTGTCAAAACCATTATCATCACTAAGTCTAGCAGATAAGCCAGAAGCATCTACTTCCATTGACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

199

Amino Acids

22.9

Weight (kDa)

5.21

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 232
AcsI RAATTY 2 cut(s) 74, 208
AcuI CTGAAG 1 cut(s) 119
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 4 cut(s) 84, 333, 384, 512
AleI CACNNNNGTG 1 cut(s) 27
AluBI AGCT 3 cut(s) 97, 311, 515
AluI AGCT 3 cut(s) 97, 311, 515
Alw26I GTCTC 1 cut(s) 389
AlwNI CAGNNNCTG 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 234
ApoI RAATTY 2 cut(s) 74, 208
ArsI GACNNNNNNTTYG 4 cut(s) 185, 217, 326, 358
AsuHPI GGTGA 1 cut(s) 41
AsuII TTCGAA 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 336
BbvCI CCTCAGC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 221
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 2 cut(s) 179, 560
BfmI CTRYAG 2 cut(s) 235, 306
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
BmsI GCATC 1 cut(s) 587
BpiI GAAGAC 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 428
BsaXI ACNNNNNCTCC 2 cut(s) 518, 548
Bse3DI GCAATG 1 cut(s) 442
BseGI GGATG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 1 cut(s) 468
BseRI GAGGAG 3 cut(s) 19, 71, 335
BseXI GCAGC 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 121
Bsp119I TTCGAA 1 cut(s) 428
Bsp143I GATC 1 cut(s) 313
BspACI CCGC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 469
BspHI TCATGA 1 cut(s) 316
BspMAI CTGCAG 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 442
BssMI GATC 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 483
BstBI TTCGAA 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 477, 554
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 1 cut(s) 313
BstNSI RCATGY 1 cut(s) 598
BstSFI CTRYAG 2 cut(s) 235, 306
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 336
BstXI CCANNNNNNTGG 1 cut(s) 279
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 239
CaiI CAGNNNCTG 1 cut(s) 97
CciI TCATGA 1 cut(s) 316
CseI GACGC 1 cut(s) 176
CviAII CATG 2 cut(s) 317, 595
CviJI RGCY 6 cut(s) 97, 283, 311, 476, 515, 571
CviKI_1 RGCY 6 cut(s) 97, 283, 311, 476, 515, 571
DdeI CTNAG 2 cut(s) 477, 554
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 119
EcoT22I ATGCAT 1 cut(s) 251
FaeI CATG 2 cut(s) 320, 598
FatI CATG 2 cut(s) 316, 594
FauNDI CATATG 1 cut(s) 388
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 235
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 2 cut(s) 179, 560
GluI GCNGC 1 cut(s) 235
HgaI GACGC 1 cut(s) 176
Hin1II CATG 2 cut(s) 320, 598
HinfI GANTC 1 cut(s) 80
HphI GGTGA 1 cut(s) 41
Hpy188III TCNNGA 4 cut(s) 92, 191, 317, 368
HpyAV CCTTC 2 cut(s) 435, 476
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 3 cut(s) 119, 237, 249
HpyF3I CTNAG 2 cut(s) 477, 554
Hsp92II CATG 2 cut(s) 320, 598
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 6 cut(s) 77, 186, 223, 241, 269, 585
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 587
MaeI CTAG 2 cut(s) 179, 560
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 4 cut(s) 79, 112, 336, 500
MluCI AATT 5 cut(s) 74, 208, 298, 417, 517
MnlI CCTC 6 cut(s) 28, 49, 270, 313, 472, 484
Mph1103I ATGCAT 1 cut(s) 251
MslI CAYNNNNRTG 2 cut(s) 27, 593
MspA1I CMGCKG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 121
NdeI CATATG 1 cut(s) 388
NdeII GATC 1 cut(s) 313
NlaIII CATG 2 cut(s) 320, 598
NsiI ATGCAT 1 cut(s) 251
NspI RCATGY 1 cut(s) 598
NspV TTCGAA 1 cut(s) 428
OliI CACNNNNGTG 1 cut(s) 27
PagI TCATGA 1 cut(s) 316
PciI ACATGT 1 cut(s) 594
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 1 cut(s) 236
PscI ACATGT 1 cut(s) 594
PstI CTGCAG 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 97
RseI CAYNNNNRTG 2 cut(s) 27, 593
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 1 cut(s) 313
SetI ASST 4 cut(s) 99, 281, 313, 517
SfaNI GCATC 1 cut(s) 587
SfcI CTRYAG 2 cut(s) 235, 306
SfuI TTCGAA 1 cut(s) 428
SmiMI CAYNNNNRTG 2 cut(s) 27, 593
Sse9I AATT 5 cut(s) 74, 208, 298, 417, 517
SsiI CCGC 1 cut(s) 232
SspMI CTAG 2 cut(s) 179, 560
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 2 cut(s) 15, 428
TasI AATT 5 cut(s) 74, 208, 298, 417, 517
TfiI GAWTC 1 cut(s) 80
TscAI CASTG 1 cut(s) 222
TseI GCWGC 1 cut(s) 234
TspDTI ATGAA 3 cut(s) 87, 152, 242
TspRI CASTG 1 cut(s) 222
XapI RAATTY 2 cut(s) 74, 208
XceI RCATGY 1 cut(s) 598
XspI CTAG 2 cut(s) 179, 560
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.